Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c29f' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5187320 --chroot fedora-rawhide-ppc64le --detached
Version: 0.62
PID: 5280
Logging PID: 5281
Task:
{'appstream': False,
'background': True,
'build_id': 5187320,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-ppc64le',
'enable_net': False,
'fedora_review': False,
'git_hash': '8fbc1d633396b5384af19025a2f015cdd5774096',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/wise2',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'wise2',
'package_version': '2.4.1-16',
'project_dirname': 'gcc-13-test',
'project_name': 'gcc-13-test',
'project_owner': 'jakub',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-ppc64le/',
'id': 'copr_base',
'name': 'Copr repository'},
{'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
'sandbox': 'jakub/gcc-13-test--jakub',
'source_json': {},
'source_type': None,
'submitter': 'jakub',
'tags': [],
'task_id': '5187320-fedora-rawhide-ppc64le',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/wise2 /var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2 --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/wise2', '/var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2'...
Running: git checkout 8fbc1d633396b5384af19025a2f015cdd5774096
cmd: ['git', 'checkout', '8fbc1d633396b5384af19025a2f015cdd5774096']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2
rc: 0
stdout:
stderr: Note: switching to '8fbc1d633396b5384af19025a2f015cdd5774096'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 8fbc1d6 automatic import of wise2
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading wise2.4.1.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
INFO: Calling: curl -H Pragma: -o wise2.4.1.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/wise2/wise2.4.1.tar.gz/md5/d70c404c1dc40ceef7718757b11bdaa0/wise2.4.1.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 3119k 100 3119k 0 0 13.1M 0 --:--:-- --:--:-- --:--:-- 13.2M
INFO: Reading stdout from command: md5sum wise2.4.1.tar.gz
Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2/wise2.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672363888.896173 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2/wise2.spec) Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672363888.896173/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 46 MB/s | 42 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 283 kB/s | 84 kB 00:00
fedora 21 MB/s | 60 MB 00:02
Dependencies resolved.
==========================================================================================================================
Package Arch Version Repository Size
==========================================================================================================================
Installing:
dnf noarch 4.14.0-1.fc38 fedora 480 k
dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k
Installing dependencies:
alternatives ppc64le 1.21-1.fc38 copr_base 41 k
audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k
basesystem noarch 11-14.fc37 fedora 7.0 k
bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M
bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M
coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M
crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k
curl ppc64le 7.87.0-1.fc38 copr_base 348 k
cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k
dbus-libs ppc64le 1:1.14.4-1.fc38 copr_base 177 k
dnf-data noarch 4.14.0-1.fc38 fedora 43 k
elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k
elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k
elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k
expat ppc64le 2.5.0-1.fc38 copr_base 117 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.6 fedora 11 k
fedora-release-common noarch 38-0.6 fedora 21 k
fedora-release-identity-basic noarch 38-0.6 fedora 11 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file-libs ppc64le 5.42-4.fc38 copr_base 688 k
filesystem ppc64le 3.18-2.fc37 fedora 1.1 M
findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k
gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M
gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k
glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M
glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M
glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k
glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k
gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k
gnupg2 ppc64le 2.3.8-1.fc38 copr_base 2.7 M
gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M
gpgme ppc64le 1.17.1-3.fc38 copr_base 229 k
grep ppc64le 3.8-1.fc38 copr_base 293 k
ima-evm-utils ppc64le 1.4-6.fc38 copr_base 67 k
json-c ppc64le 0.16-3.fc38 copr_base 46 k
keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k
krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k
libacl ppc64le 2.3.1-4.fc38 copr_base 26 k
libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k
libassuan ppc64le 2.5.5-5.fc38 copr_base 71 k
libattr ppc64le 2.5.1-5.fc38 copr_base 19 k
libb2 ppc64le 0.98.1-7.fc38 copr_base 26 k
libblkid ppc64le 2.38.1-3.fc38 copr_base 123 k
libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k
libcap ppc64le 2.48-5.fc38 copr_base 73 k
libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k
libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k
libcomps ppc64le 0.1.18-4.fc38 copr_base 84 k
libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k
libdnf ppc64le 0.68.0-1.fc38 copr_base 668 k
libevent ppc64le 2.1.12-7.fc38 copr_base 276 k
libffi ppc64le 3.4.4-1.fc38 copr_base 39 k
libfsverity ppc64le 1.4-8.fc38 copr_base 20 k
libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k
libgcrypt ppc64le 1.10.1-6.fc38 copr_base 596 k
libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k
libgpg-error ppc64le 1.46-1.fc38 copr_base 233 k
libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k
libksba ppc64le 1.6.3-1.fc38 copr_base 175 k
libmodulemd ppc64le 2.14.0-4.fc38 copr_base 233 k
libmount ppc64le 2.38.1-3.fc38 copr_base 154 k
libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k
libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k
libpsl ppc64le 0.21.2-1.fc38 fedora 67 k
librepo ppc64le 1.15.1-1.fc38 copr_base 104 k
libreport-filesystem noarch 2.17.6-1.fc38 copr_base 14 k
libselinux ppc64le 3.5-0.rc1.1.fc38 fedora 99 k
libsemanage ppc64le 3.5-0.rc1.1.fc38 fedora 131 k
libsepol ppc64le 3.5-0.rc1.1.fc38 fedora 356 k
libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k
libsmartcols ppc64le 2.38.1-3.fc38 copr_base 70 k
libsolv ppc64le 0.7.22-3.fc38 copr_base 467 k
libssh ppc64le 0.10.4-2.fc38 copr_base 236 k
libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k
libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k
libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k
libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k
libunistring ppc64le 1.0-2.fc38 copr_base 575 k
libuuid ppc64le 2.38.1-3.fc38 copr_base 29 k
libverto ppc64le 0.3.2-4.fc38 copr_base 23 k
libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k
libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k
libyaml ppc64le 0.2.5-8.fc38 copr_base 70 k
libzstd ppc64le 1.5.2-3.fc37 fedora 316 k
lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k
lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k
mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k
mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k
ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k
ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k
nettle ppc64le 3.8-2.fc38 copr_base 443 k
npth ppc64le 1.6-10.fc38 copr_base 25 k
openldap ppc64le 2.6.3-1.fc38 copr_base 288 k
openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M
p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k
p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k
pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k
pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k
popt ppc64le 1.19-1.fc38 copr_base 64 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 ppc64le 3.11.1-1.fc38 copr_base 28 k
python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k
python3-dbus ppc64le 1.3.2-1.fc38 copr_base 152 k
python3-distro noarch 1.8.0-1.fc38 fedora 49 k
python3-dnf noarch 4.14.0-1.fc38 fedora 607 k
python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k
python3-gpg ppc64le 1.17.1-3.fc38 copr_base 285 k
python3-hawkey ppc64le 0.68.0-1.fc38 copr_base 109 k
python3-libcomps ppc64le 0.1.18-4.fc38 copr_base 53 k
python3-libdnf ppc64le 0.68.0-1.fc38 copr_base 815 k
python3-libs ppc64le 3.11.1-1.fc38 copr_base 9.3 M
python3-rpm ppc64le 4.18.0-8.fc38 copr_base 102 k
python3-six noarch 1.16.0-8.fc37 fedora 42 k
readline ppc64le 8.2-2.fc38 copr_base 229 k
rpm ppc64le 4.18.0-8.fc38 copr_base 538 k
rpm-build-libs ppc64le 4.18.0-8.fc38 copr_base 103 k
rpm-libs ppc64le 4.18.0-8.fc38 copr_base 355 k
rpm-sequoia ppc64le 1.2.0-1.fc38 copr_base 1.4 M
rpm-sign-libs ppc64le 4.18.0-8.fc38 copr_base 27 k
sed ppc64le 4.8-11.fc38 copr_base 304 k
setup noarch 2.14.3-1.fc38 fedora 152 k
shadow-utils ppc64le 2:4.13-3.fc38 copr_base 1.2 M
sqlite-libs ppc64le 3.40.0-1.fc38 copr_base 776 k
systemd-libs ppc64le 252.4-598.fc38 copr_base 672 k
tpm2-tss ppc64le 4.0.0-0.1.rc2.fc38 copr_base 627 k
tzdata noarch 2022g-1.fc38 copr_base 432 k
xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k
zchunk-libs ppc64le 1.2.3-1.fc38 fedora 55 k
zlib ppc64le 1.2.13-1.fc38 fedora 100 k
Transaction Summary
==========================================================================================================================
Install 137 Packages
Total download size: 59 M
Installed size: 284 M
Downloading Packages:
(1/137): alternatives-1.21-1.fc38.ppc64le.rpm 198 kB/s | 41 kB 00:00
(2/137): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm 219 kB/s | 48 kB 00:00
(3/137): coreutils-9.1-8.fc38.ppc64le.rpm 21 MB/s | 1.3 MB 00:00
(4/137): coreutils-common-9.1-8.fc38.ppc64le.rp 18 MB/s | 2.0 MB 00:00
(5/137): curl-7.87.0-1.fc38.ppc64le.rpm 5.5 MB/s | 348 kB 00:00
(6/137): bash-5.2.9-3.fc38.ppc64le.rpm 5.2 MB/s | 1.9 MB 00:00
(7/137): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.r 23 MB/s | 882 kB 00:00
(8/137): dbus-libs-1.14.4-1.fc38.ppc64le.rpm 4.7 MB/s | 177 kB 00:00
(9/137): elfutils-default-yama-scope-0.188-3.fc 1.1 MB/s | 16 kB 00:00
(10/137): elfutils-libelf-0.188-3.fc38.ppc64le. 15 MB/s | 205 kB 00:00
(11/137): expat-2.5.0-1.fc38.ppc64le.rpm 8.6 MB/s | 117 kB 00:00
(12/137): elfutils-libs-0.188-3.fc38.ppc64le.rp 15 MB/s | 291 kB 00:00
(13/137): file-libs-5.42-4.fc38.ppc64le.rpm 28 MB/s | 688 kB 00:00
(14/137): findutils-4.9.0-2.fc38.ppc64le.rpm 17 MB/s | 530 kB 00:00
(15/137): gawk-5.1.1-4.fc38.ppc64le.rpm 24 MB/s | 1.0 MB 00:00
(16/137): gdbm-libs-1.23-2.fc38.ppc64le.rpm 2.3 MB/s | 62 kB 00:00
(17/137): gmp-6.2.1-3.fc38.ppc64le.rpm 6.9 MB/s | 304 kB 00:00
(18/137): glib2-2.74.1-2.fc38.ppc64le.rpm 35 MB/s | 2.8 MB 00:00
(19/137): gnupg2-2.3.8-1.fc38.ppc64le.rpm 29 MB/s | 2.7 MB 00:00
(20/137): gnutls-3.7.8-9.fc38.ppc64le.rpm 17 MB/s | 1.1 MB 00:00
(21/137): gpgme-1.17.1-3.fc38.ppc64le.rpm 4.9 MB/s | 229 kB 00:00
(22/137): grep-3.8-1.fc38.ppc64le.rpm 18 MB/s | 293 kB 00:00
(23/137): ima-evm-utils-1.4-6.fc38.ppc64le.rpm 6.4 MB/s | 67 kB 00:00
(24/137): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.4 MB/s | 33 kB 00:00
(25/137): json-c-0.16-3.fc38.ppc64le.rpm 4.2 MB/s | 46 kB 00:00
(26/137): krb5-libs-1.20.1-3.fc38.ppc64le.rpm 39 MB/s | 805 kB 00:00
(27/137): libacl-2.3.1-4.fc38.ppc64le.rpm 1.3 MB/s | 26 kB 00:00
(28/137): libarchive-3.6.1-3.fc38.ppc64le.rpm 22 MB/s | 464 kB 00:00
(29/137): libassuan-2.5.5-5.fc38.ppc64le.rpm 7.0 MB/s | 71 kB 00:00
(30/137): libattr-2.5.1-5.fc38.ppc64le.rpm 2.0 MB/s | 19 kB 00:00
(31/137): libb2-0.98.1-7.fc38.ppc64le.rpm 2.7 MB/s | 26 kB 00:00
(32/137): libblkid-2.38.1-3.fc38.ppc64le.rpm 8.3 MB/s | 123 kB 00:00
(33/137): libcap-2.48-5.fc38.ppc64le.rpm 4.8 MB/s | 73 kB 00:00
(34/137): libbrotli-1.0.9-9.fc38.ppc64le.rpm 18 MB/s | 345 kB 00:00
(35/137): libcap-ng-0.8.3-4.fc38.ppc64le.rpm 3.2 MB/s | 34 kB 00:00
(36/137): libcom_err-1.46.5-3.fc38.ppc64le.rpm 2.7 MB/s | 26 kB 00:00
(37/137): libcomps-0.1.18-4.fc38.ppc64le.rpm 7.9 MB/s | 84 kB 00:00
(38/137): libcurl-7.87.0-1.fc38.ppc64le.rpm 22 MB/s | 334 kB 00:00
(39/137): libdnf-0.68.0-1.fc38.ppc64le.rpm 30 MB/s | 668 kB 00:00
(40/137): libevent-2.1.12-7.fc38.ppc64le.rpm 14 MB/s | 276 kB 00:00
(41/137): libffi-3.4.4-1.fc38.ppc64le.rpm 3.4 MB/s | 39 kB 00:00
(42/137): libfsverity-1.4-8.fc38.ppc64le.rpm 1.8 MB/s | 20 kB 00:00
(43/137): libgpg-error-1.46-1.fc38.ppc64le.rpm 16 MB/s | 233 kB 00:00
(44/137): libgcrypt-1.10.1-6.fc38.ppc64le.rpm 28 MB/s | 596 kB 00:00
(45/137): libidn2-2.3.4-1.fc38.ppc64le.rpm 11 MB/s | 157 kB 00:00
(46/137): libksba-1.6.3-1.fc38.ppc64le.rpm 10 MB/s | 175 kB 00:00
(47/137): libmodulemd-2.14.0-4.fc38.ppc64le.rpm 16 MB/s | 233 kB 00:00
(48/137): libmount-2.38.1-3.fc38.ppc64le.rpm 11 MB/s | 154 kB 00:00
(49/137): libnghttp2-1.51.0-1.fc38.ppc64le.rpm 7.4 MB/s | 85 kB 00:00
(50/137): libnsl2-2.0.0-4.fc38.ppc64le.rpm 3.6 MB/s | 33 kB 00:00
(51/137): librepo-1.15.1-1.fc38.ppc64le.rpm 9.1 MB/s | 104 kB 00:00
(52/137): libreport-filesystem-2.17.6-1.fc38.no 1.6 MB/s | 14 kB 00:00
(53/137): libsigsegv-2.14-3.fc38.ppc64le.rpm 3.1 MB/s | 28 kB 00:00
(54/137): libsmartcols-2.38.1-3.fc38.ppc64le.rp 6.7 MB/s | 70 kB 00:00
(55/137): libsolv-0.7.22-3.fc38.ppc64le.rpm 29 MB/s | 467 kB 00:00
(56/137): libssh-0.10.4-2.fc38.ppc64le.rpm 15 MB/s | 236 kB 00:00
(57/137): libssh-config-0.10.4-2.fc38.noarch.rp 783 kB/s | 9.2 kB 00:00
(58/137): libtasn1-4.19.0-1.fc38.ppc64le.rpm 7.5 MB/s | 81 kB 00:00
(59/137): libtirpc-1.3.3-0.fc38.ppc64le.rpm 8.8 MB/s | 108 kB 00:00
(60/137): libunistring-1.0-2.fc38.ppc64le.rpm 29 MB/s | 575 kB 00:00
(61/137): libuuid-2.38.1-3.fc38.ppc64le.rpm 2.7 MB/s | 29 kB 00:00
(62/137): libverto-0.3.2-4.fc38.ppc64le.rpm 2.6 MB/s | 23 kB 00:00
(63/137): libxcrypt-4.4.33-5.fc38.ppc64le.rpm 11 MB/s | 133 kB 00:00
(64/137): libxml2-2.10.3-2.fc38.ppc64le.rpm 35 MB/s | 780 kB 00:00
(65/137): libyaml-0.2.5-8.fc38.ppc64le.rpm 3.1 MB/s | 70 kB 00:00
(66/137): lua-libs-5.4.4-6.fc38.ppc64le.rpm 12 MB/s | 149 kB 00:00
(67/137): lz4-libs-1.9.3-5.fc38.ppc64le.rpm 8.7 MB/s | 90 kB 00:00
(68/137): mpdecimal-2.5.1-4.fc38.ppc64le.rpm 10 MB/s | 118 kB 00:00
(69/137): mpfr-4.1.1-2.fc38.ppc64le.rpm 31 MB/s | 609 kB 00:00
(70/137): ncurses-base-6.3-5.20221126.fc38.noar 5.5 MB/s | 62 kB 00:00
(71/137): ncurses-libs-6.3-5.20221126.fc38.ppc6 25 MB/s | 374 kB 00:00
(72/137): nettle-3.8-2.fc38.ppc64le.rpm 27 MB/s | 443 kB 00:00
(73/137): npth-1.6-10.fc38.ppc64le.rpm 1.6 MB/s | 25 kB 00:00
(74/137): openldap-2.6.3-1.fc38.ppc64le.rpm 18 MB/s | 288 kB 00:00
(75/137): p11-kit-0.24.1-5.fc38.ppc64le.rpm 18 MB/s | 359 kB 00:00
(76/137): openssl-libs-3.0.5-6.fc38.ppc64le.rpm 50 MB/s | 2.2 MB 00:00
(77/137): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 3.6 MB/s | 150 kB 00:00
(78/137): pcre2-10.40-1.fc38.1.ppc64le.rpm 8.6 MB/s | 242 kB 00:00
(79/137): pcre2-syntax-10.40-1.fc38.1.noarch.rp 13 MB/s | 143 kB 00:00
(80/137): popt-1.19-1.fc38.ppc64le.rpm 6.4 MB/s | 64 kB 00:00
(81/137): python3-3.11.1-1.fc38.ppc64le.rpm 2.7 MB/s | 28 kB 00:00
(82/137): python3-dbus-1.3.2-1.fc38.ppc64le.rpm 12 MB/s | 152 kB 00:00
(83/137): python3-hawkey-0.68.0-1.fc38.ppc64le. 8.7 MB/s | 109 kB 00:00
(84/137): python3-gpg-1.17.1-3.fc38.ppc64le.rpm 19 MB/s | 285 kB 00:00
(85/137): python3-libcomps-0.1.18-4.fc38.ppc64l 4.2 MB/s | 53 kB 00:00
(86/137): python3-libdnf-0.68.0-1.fc38.ppc64le. 35 MB/s | 815 kB 00:00
(87/137): python3-rpm-4.18.0-8.fc38.ppc64le.rpm 2.1 MB/s | 102 kB 00:00
(88/137): readline-8.2-2.fc38.ppc64le.rpm 3.6 MB/s | 229 kB 00:00
(89/137): rpm-4.18.0-8.fc38.ppc64le.rpm 9.1 MB/s | 538 kB 00:00
(90/137): python3-libs-3.11.1-1.fc38.ppc64le.rp 58 MB/s | 9.3 MB 00:00
(91/137): rpm-build-libs-4.18.0-8.fc38.ppc64le. 1.3 MB/s | 103 kB 00:00
(92/137): rpm-libs-4.18.0-8.fc38.ppc64le.rpm 7.2 MB/s | 355 kB 00:00
(93/137): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm 43 MB/s | 1.4 MB 00:00
(94/137): rpm-sign-libs-4.18.0-8.fc38.ppc64le.r 914 kB/s | 27 kB 00:00
(95/137): sed-4.8-11.fc38.ppc64le.rpm 9.2 MB/s | 304 kB 00:00
(96/137): sqlite-libs-3.40.0-1.fc38.ppc64le.rpm 23 MB/s | 776 kB 00:00
(97/137): shadow-utils-4.13-3.fc38.ppc64le.rpm 24 MB/s | 1.2 MB 00:00
(98/137): systemd-libs-252.4-598.fc38.ppc64le.r 12 MB/s | 672 kB 00:00
(99/137): tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le.r 26 MB/s | 627 kB 00:00
(100/137): tzdata-2022g-1.fc38.noarch.rpm 26 MB/s | 432 kB 00:00
(101/137): libgomp-13.0.0-0.4.fc38.ppc64le.rpm 1.1 MB/s | 314 kB 00:00
(102/137): libgcc-13.0.0-0.4.fc38.ppc64le.rpm 307 kB/s | 88 kB 00:00
(103/137): libstdc++-13.0.0-0.4.fc38.ppc64le.rp 3.0 MB/s | 932 kB 00:00
(104/137): basesystem-11-14.fc37.noarch.rpm 164 kB/s | 7.0 kB 00:00
(105/137): audit-libs-3.0.9-2.fc38.ppc64le.rpm 1.1 MB/s | 130 kB 00:00
(106/137): crypto-policies-20221215-1.gita4c31a 1.2 MB/s | 90 kB 00:00
(107/137): dnf-data-4.14.0-1.fc38.noarch.rpm 1.5 MB/s | 43 kB 00:00
(108/137): dnf-plugins-core-4.3.1-1.fc38.noarch 1.3 MB/s | 34 kB 00:00
(109/137): dnf-4.14.0-1.fc38.noarch.rpm 6.3 MB/s | 480 kB 00:00
(110/137): fedora-release-38-0.6.noarch.rpm 497 kB/s | 11 kB 00:00
(111/137): fedora-gpg-keys-38-0.3.noarch.rpm 3.0 MB/s | 125 kB 00:00
(112/137): ca-certificates-2022.2.54-5.fc37.noa 4.5 MB/s | 829 kB 00:00
(113/137): fedora-release-common-38-0.6.noarch. 962 kB/s | 21 kB 00:00
(114/137): fedora-release-identity-basic-38-0.6 522 kB/s | 11 kB 00:00
(115/137): fedora-repos-38-0.3.noarch.rpm 472 kB/s | 10 kB 00:00
(116/137): fedora-repos-rawhide-38-0.3.noarch.r 449 kB/s | 9.7 kB 00:00
(117/137): glibc-common-2.36.9000-19.fc38.ppc64 9.8 MB/s | 322 kB 00:00
(118/137): glibc-2.36.9000-19.fc38.ppc64le.rpm 29 MB/s | 2.2 MB 00:00
(119/137): glibc-minimal-langpack-2.36.9000-19. 1.1 MB/s | 30 kB 00:00
(120/137): filesystem-3.18-2.fc37.ppc64le.rpm 11 MB/s | 1.1 MB 00:00
(121/137): libpsl-0.21.2-1.fc38.ppc64le.rpm 2.9 MB/s | 67 kB 00:00
(122/137): libselinux-3.5-0.rc1.1.fc38.ppc64le. 4.1 MB/s | 99 kB 00:00
(123/137): libsemanage-3.5-0.rc1.1.fc38.ppc64le 5.5 MB/s | 131 kB 00:00
(124/137): libsepol-3.5-0.rc1.1.fc38.ppc64le.rp 13 MB/s | 356 kB 00:00
(125/137): libzstd-1.5.2-3.fc37.ppc64le.rpm 10 MB/s | 316 kB 00:00
(126/137): publicsuffix-list-dafsa-20221208-1.f 2.6 MB/s | 59 kB 00:00
(127/137): python-pip-wheel-22.3.1-1.fc38.noarc 33 MB/s | 1.4 MB 00:00
(128/137): python3-dateutil-2.8.2-4.fc37.noarch 10 MB/s | 361 kB 00:00
(129/137): python-setuptools-wheel-65.5.1-1.fc3 15 MB/s | 715 kB 00:00
(130/137): python3-distro-1.8.0-1.fc38.noarch.r 1.9 MB/s | 49 kB 00:00
(131/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 18 MB/s | 607 kB 00:00
(132/137): python3-dnf-plugins-core-4.3.1-1.fc3 9.2 MB/s | 277 kB 00:00
(133/137): python3-six-1.16.0-8.fc37.noarch.rpm 1.9 MB/s | 42 kB 00:00
(134/137): setup-2.14.3-1.fc38.noarch.rpm 6.4 MB/s | 152 kB 00:00
(135/137): xz-libs-5.2.9-1.fc38.ppc64le.rpm 4.3 MB/s | 104 kB 00:00
(136/137): zchunk-libs-1.2.3-1.fc38.ppc64le.rpm 2.3 MB/s | 55 kB 00:00
(137/137): zlib-1.2.13-1.fc38.ppc64le.rpm 4.1 MB/s | 100 kB 00:00
--------------------------------------------------------------------------------
Total 30 MB/s | 59 MB 00:01
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1
Preparing : 1/1
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Installing : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 21/137
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warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew
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useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'
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Verifying : grep-3.8-1.fc38.ppc64le 22/137
Verifying : ima-evm-utils-1.4-6.fc38.ppc64le 23/137
Verifying : json-c-0.16-3.fc38.ppc64le 24/137
Verifying : keyutils-libs-1.6.1-5.fc38.ppc64le 25/137
Verifying : krb5-libs-1.20.1-3.fc38.ppc64le 26/137
Verifying : libacl-2.3.1-4.fc38.ppc64le 27/137
Verifying : libarchive-3.6.1-3.fc38.ppc64le 28/137
Verifying : libassuan-2.5.5-5.fc38.ppc64le 29/137
Verifying : libattr-2.5.1-5.fc38.ppc64le 30/137
Verifying : libb2-0.98.1-7.fc38.ppc64le 31/137
Verifying : libblkid-2.38.1-3.fc38.ppc64le 32/137
Verifying : libbrotli-1.0.9-9.fc38.ppc64le 33/137
Verifying : libcap-2.48-5.fc38.ppc64le 34/137
Verifying : libcap-ng-0.8.3-4.fc38.ppc64le 35/137
Verifying : libcom_err-1.46.5-3.fc38.ppc64le 36/137
Verifying : libcomps-0.1.18-4.fc38.ppc64le 37/137
Verifying : libcurl-7.87.0-1.fc38.ppc64le 38/137
Verifying : libdnf-0.68.0-1.fc38.ppc64le 39/137
Verifying : libevent-2.1.12-7.fc38.ppc64le 40/137
Verifying : libffi-3.4.4-1.fc38.ppc64le 41/137
Verifying : libfsverity-1.4-8.fc38.ppc64le 42/137
Verifying : libgcrypt-1.10.1-6.fc38.ppc64le 43/137
Verifying : libgpg-error-1.46-1.fc38.ppc64le 44/137
Verifying : libidn2-2.3.4-1.fc38.ppc64le 45/137
Verifying : libksba-1.6.3-1.fc38.ppc64le 46/137
Verifying : libmodulemd-2.14.0-4.fc38.ppc64le 47/137
Verifying : libmount-2.38.1-3.fc38.ppc64le 48/137
Verifying : libnghttp2-1.51.0-1.fc38.ppc64le 49/137
Verifying : libnsl2-2.0.0-4.fc38.ppc64le 50/137
Verifying : librepo-1.15.1-1.fc38.ppc64le 51/137
Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 52/137
Verifying : libsigsegv-2.14-3.fc38.ppc64le 53/137
Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 54/137
Verifying : libsolv-0.7.22-3.fc38.ppc64le 55/137
Verifying : libssh-0.10.4-2.fc38.ppc64le 56/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 57/137
Verifying : libtasn1-4.19.0-1.fc38.ppc64le 58/137
Verifying : libtirpc-1.3.3-0.fc38.ppc64le 59/137
Verifying : libunistring-1.0-2.fc38.ppc64le 60/137
Verifying : libuuid-2.38.1-3.fc38.ppc64le 61/137
Verifying : libverto-0.3.2-4.fc38.ppc64le 62/137
Verifying : libxcrypt-4.4.33-5.fc38.ppc64le 63/137
Verifying : libxml2-2.10.3-2.fc38.ppc64le 64/137
Verifying : libyaml-0.2.5-8.fc38.ppc64le 65/137
Verifying : lua-libs-5.4.4-6.fc38.ppc64le 66/137
Verifying : lz4-libs-1.9.3-5.fc38.ppc64le 67/137
Verifying : mpdecimal-2.5.1-4.fc38.ppc64le 68/137
Verifying : mpfr-4.1.1-2.fc38.ppc64le 69/137
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 70/137
Verifying : ncurses-libs-6.3-5.20221126.fc38.ppc64le 71/137
Verifying : nettle-3.8-2.fc38.ppc64le 72/137
Verifying : npth-1.6-10.fc38.ppc64le 73/137
Verifying : openldap-2.6.3-1.fc38.ppc64le 74/137
Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 75/137
Verifying : p11-kit-0.24.1-5.fc38.ppc64le 76/137
Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 77/137
Verifying : pcre2-10.40-1.fc38.1.ppc64le 78/137
Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 79/137
Verifying : popt-1.19-1.fc38.ppc64le 80/137
Verifying : python3-3.11.1-1.fc38.ppc64le 81/137
Verifying : python3-dbus-1.3.2-1.fc38.ppc64le 82/137
Verifying : python3-gpg-1.17.1-3.fc38.ppc64le 83/137
Verifying : python3-hawkey-0.68.0-1.fc38.ppc64le 84/137
Verifying : python3-libcomps-0.1.18-4.fc38.ppc64le 85/137
Verifying : python3-libdnf-0.68.0-1.fc38.ppc64le 86/137
Verifying : python3-libs-3.11.1-1.fc38.ppc64le 87/137
Verifying : python3-rpm-4.18.0-8.fc38.ppc64le 88/137
Verifying : readline-8.2-2.fc38.ppc64le 89/137
Verifying : rpm-4.18.0-8.fc38.ppc64le 90/137
Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 91/137
Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 92/137
Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 93/137
Verifying : rpm-sign-libs-4.18.0-8.fc38.ppc64le 94/137
Verifying : sed-4.8-11.fc38.ppc64le 95/137
Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 96/137
Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 97/137
Verifying : systemd-libs-252.4-598.fc38.ppc64le 98/137
Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 99/137
Verifying : tzdata-2022g-1.fc38.noarch 100/137
Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 101/137
Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 102/137
Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 103/137
Verifying : audit-libs-3.0.9-2.fc38.ppc64le 104/137
Verifying : basesystem-11-14.fc37.noarch 105/137
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 106/137
Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 107/137
Verifying : dnf-4.14.0-1.fc38.noarch 108/137
Verifying : dnf-data-4.14.0-1.fc38.noarch 109/137
Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 110/137
Verifying : fedora-gpg-keys-38-0.3.noarch 111/137
Verifying : fedora-release-38-0.6.noarch 112/137
Verifying : fedora-release-common-38-0.6.noarch 113/137
Verifying : fedora-release-identity-basic-38-0.6.noarch 114/137
Verifying : fedora-repos-38-0.3.noarch 115/137
Verifying : fedora-repos-rawhide-38-0.3.noarch 116/137
Verifying : filesystem-3.18-2.fc37.ppc64le 117/137
Verifying : glibc-2.36.9000-19.fc38.ppc64le 118/137
Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 119/137
Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 120/137
Verifying : libpsl-0.21.2-1.fc38.ppc64le 121/137
Verifying : libselinux-3.5-0.rc1.1.fc38.ppc64le 122/137
Verifying : libsemanage-3.5-0.rc1.1.fc38.ppc64le 123/137
Verifying : libsepol-3.5-0.rc1.1.fc38.ppc64le 124/137
Verifying : libzstd-1.5.2-3.fc37.ppc64le 125/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 126/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 127/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 128/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 129/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 130/137
Verifying : python3-dnf-4.14.0-1.fc38.noarch 131/137
Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 132/137
Verifying : python3-six-1.16.0-8.fc37.noarch 133/137
Verifying : setup-2.14.3-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.ppc64le 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.ppc64le 136/137
Verifying : zlib-1.2.13-1.fc38.ppc64le 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.ppc64le
audit-libs-3.0.9-2.fc38.ppc64le
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.ppc64le
coreutils-common-9.1-8.fc38.ppc64le
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.ppc64le
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
dbus-libs-1:1.14.4-1.fc38.ppc64le
dnf-4.14.0-1.fc38.noarch
dnf-data-4.14.0-1.fc38.noarch
dnf-plugins-core-4.3.1-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.ppc64le
elfutils-libs-0.188-3.fc38.ppc64le
expat-2.5.0-1.fc38.ppc64le
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc38.ppc64le
filesystem-3.18-2.fc37.ppc64le
findutils-1:4.9.0-2.fc38.ppc64le
gawk-5.1.1-4.fc38.ppc64le
gdbm-libs-1:1.23-2.fc38.ppc64le
glib2-2.74.1-2.fc38.ppc64le
glibc-2.36.9000-19.fc38.ppc64le
glibc-common-2.36.9000-19.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
gmp-1:6.2.1-3.fc38.ppc64le
gnupg2-2.3.8-1.fc38.ppc64le
gnutls-3.7.8-9.fc38.ppc64le
gpgme-1.17.1-3.fc38.ppc64le
grep-3.8-1.fc38.ppc64le
ima-evm-utils-1.4-6.fc38.ppc64le
json-c-0.16-3.fc38.ppc64le
keyutils-libs-1.6.1-5.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
libacl-2.3.1-4.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
libassuan-2.5.5-5.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
libb2-0.98.1-7.fc38.ppc64le
libblkid-2.38.1-3.fc38.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
libcap-2.48-5.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
libcomps-0.1.18-4.fc38.ppc64le
libcurl-7.87.0-1.fc38.ppc64le
libdnf-0.68.0-1.fc38.ppc64le
libevent-2.1.12-7.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
libfsverity-1.4-8.fc38.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
libgcrypt-1.10.1-6.fc38.ppc64le
libgomp-13.0.0-0.4.fc38.ppc64le
libgpg-error-1.46-1.fc38.ppc64le
libidn2-2.3.4-1.fc38.ppc64le
libksba-1.6.3-1.fc38.ppc64le
libmodulemd-2.14.0-4.fc38.ppc64le
libmount-2.38.1-3.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
libnsl2-2.0.0-4.fc38.ppc64le
libpsl-0.21.2-1.fc38.ppc64le
librepo-1.15.1-1.fc38.ppc64le
libreport-filesystem-2.17.6-1.fc38.noarch
libselinux-3.5-0.rc1.1.fc38.ppc64le
libsemanage-3.5-0.rc1.1.fc38.ppc64le
libsepol-3.5-0.rc1.1.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
libsmartcols-2.38.1-3.fc38.ppc64le
libsolv-0.7.22-3.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.ppc64le
libtasn1-4.19.0-1.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
libunistring-1.0-2.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
libverto-0.3.2-4.fc38.ppc64le
libxcrypt-4.4.33-5.fc38.ppc64le
libxml2-2.10.3-2.fc38.ppc64le
libyaml-0.2.5-8.fc38.ppc64le
libzstd-1.5.2-3.fc37.ppc64le
lua-libs-5.4.4-6.fc38.ppc64le
lz4-libs-1.9.3-5.fc38.ppc64le
mpdecimal-2.5.1-4.fc38.ppc64le
mpfr-4.1.1-2.fc38.ppc64le
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
npth-1.6-10.fc38.ppc64le
openldap-2.6.3-1.fc38.ppc64le
openssl-libs-1:3.0.5-6.fc38.ppc64le
p11-kit-0.24.1-5.fc38.ppc64le
p11-kit-trust-0.24.1-5.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
popt-1.19-1.fc38.ppc64le
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.ppc64le
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-1.fc38.ppc64le
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-1.fc38.noarch
python3-dnf-plugins-core-4.3.1-1.fc38.noarch
python3-gpg-1.17.1-3.fc38.ppc64le
python3-hawkey-0.68.0-1.fc38.ppc64le
python3-libcomps-0.1.18-4.fc38.ppc64le
python3-libdnf-0.68.0-1.fc38.ppc64le
python3-libs-3.11.1-1.fc38.ppc64le
python3-rpm-4.18.0-8.fc38.ppc64le
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.ppc64le
rpm-4.18.0-8.fc38.ppc64le
rpm-build-libs-4.18.0-8.fc38.ppc64le
rpm-libs-4.18.0-8.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
rpm-sign-libs-4.18.0-8.fc38.ppc64le
sed-4.8-11.fc38.ppc64le
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
systemd-libs-252.4-598.fc38.ppc64le
tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.ppc64le
zchunk-libs-1.2.3-1.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 28 MB/s | 42 MB 00:01
Additional repo https_jakub_fedorapeople_org_fe 129 kB/s | 84 kB 00:00
fedora 20 MB/s | 60 MB 00:02
Dependencies resolved.
==========================================================================================================================
Package Arch Version Repository Size
==========================================================================================================================
Installing group/module packages:
bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M
bzip2 ppc64le 1.0.8-12.fc38 copr_base 54 k
coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M
cpio ppc64le 2.13-13.fc38 copr_base 277 k
diffutils ppc64le 3.8-3.fc38 copr_base 381 k
fedora-release-common noarch 38-0.6 fedora 21 k
findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k
gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M
glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k
grep ppc64le 3.8-1.fc38 copr_base 293 k
gzip ppc64le 1.12-2.fc38 copr_base 163 k
info ppc64le 7.0.1-1.fc38 copr_base 201 k
patch ppc64le 2.7.6-17.fc38 copr_base 136 k
redhat-rpm-config noarch 236-1.fc38 fedora 81 k
rpm-build ppc64le 4.18.0-8.fc38 copr_base 71 k
sed ppc64le 4.8-11.fc38 copr_base 304 k
shadow-utils ppc64le 2:4.13-3.fc38 copr_base 1.2 M
tar ppc64le 2:1.34-5.fc38 copr_base 909 k
unzip ppc64le 6.0-58.fc38 copr_base 189 k
util-linux ppc64le 2.38.1-3.fc38 copr_base 2.4 M
which ppc64le 2.21-36.fc38 copr_base 43 k
xz ppc64le 5.2.9-1.fc38 fedora 310 k
Installing dependencies:
alternatives ppc64le 1.21-1.fc38 copr_base 41 k
ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k
audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k
authselect ppc64le 1.4.2-1.fc38 copr_base 141 k
authselect-libs ppc64le 1.4.2-1.fc38 copr_base 241 k
basesystem noarch 11-14.fc37 fedora 7.0 k
binutils ppc64le 2.39-6.fc38 copr_base 6.2 M
binutils-gold ppc64le 2.39-6.fc38 copr_base 1.1 M
bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M
cracklib ppc64le 2.9.7-30.fc38 copr_base 84 k
crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k
curl ppc64le 7.87.0-1.fc38 copr_base 348 k
cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k
debugedit ppc64le 5.0-5.fc37 fedora 80 k
dwz ppc64le 0.15-1.fc38 copr_base 143 k
ed ppc64le 1.18-2.fc38 copr_base 82 k
efi-srpm-macros noarch 5-6.fc37 fedora 22 k
elfutils ppc64le 0.188-3.fc38 copr_base 555 k
elfutils-debuginfod-client ppc64le 0.188-3.fc38 copr_base 42 k
elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k
elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k
elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.6 fedora 11 k
fedora-release-identity-basic noarch 38-0.6 fedora 11 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file ppc64le 5.42-4.fc38 copr_base 50 k
file-libs ppc64le 5.42-4.fc38 copr_base 688 k
filesystem ppc64le 3.18-2.fc37 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k
fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k
gdb-minimal ppc64le 12.1-10.fc38 fedora 3.7 M
gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k
ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k
glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M
glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k
glibc-gconv-extra ppc64le 2.36.9000-19.fc38 fedora 1.9 M
gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k
gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k
go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k
jansson ppc64le 2.13.1-5.fc38 copr_base 50 k
kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k
keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k
krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k
libacl ppc64le 2.3.1-4.fc38 copr_base 26 k
libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k
libattr ppc64le 2.5.1-5.fc38 copr_base 19 k
libblkid ppc64le 2.38.1-3.fc38 copr_base 123 k
libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k
libcap ppc64le 2.48-5.fc38 copr_base 73 k
libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k
libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k
libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k
libdb ppc64le 5.3.28-54.fc38 copr_base 842 k
libeconf ppc64le 0.4.0-4.fc38 copr_base 31 k
libevent ppc64le 2.1.12-7.fc38 copr_base 276 k
libfdisk ppc64le 2.38.1-3.fc38 copr_base 177 k
libffi ppc64le 3.4.4-1.fc38 copr_base 39 k
libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k
libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k
libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k
libmount ppc64le 2.38.1-3.fc38 copr_base 154 k
libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k
libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k
libpkgconf ppc64le 1.8.0-3.fc38 copr_base 40 k
libpsl ppc64le 0.21.2-1.fc38 fedora 67 k
libpwquality ppc64le 1.4.5-1.fc38 fedora 122 k
librtas ppc64le 2.0.3-1.fc38 copr_base 68 k
libselinux ppc64le 3.5-0.rc1.1.fc38 fedora 99 k
libsemanage ppc64le 3.5-0.rc1.1.fc38 fedora 131 k
libsepol ppc64le 3.5-0.rc1.1.fc38 fedora 356 k
libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k
libsmartcols ppc64le 2.38.1-3.fc38 copr_base 70 k
libssh ppc64le 0.10.4-2.fc38 copr_base 236 k
libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k
libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k
libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k
libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k
libunistring ppc64le 1.0-2.fc38 copr_base 575 k
libutempter ppc64le 1.2.1-7.fc38 copr_base 27 k
libuuid ppc64le 2.38.1-3.fc38 copr_base 29 k
libverto ppc64le 0.3.2-4.fc38 copr_base 23 k
libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k
libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k
libzstd ppc64le 1.5.2-3.fc37 fedora 316 k
lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k
lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k
lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k
mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k
ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k
ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k
nettle ppc64le 3.8-2.fc38 copr_base 443 k
nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k
openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k
openldap ppc64le 2.6.3-1.fc38 copr_base 288 k
openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M
p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k
p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k
package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k
pam ppc64le 1.5.2-15.fc38 copr_base 569 k
pam-libs ppc64le 1.5.2-15.fc38 copr_base 64 k
pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k
pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k
perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k
pkgconf ppc64le 1.8.0-3.fc38 copr_base 43 k
pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k
pkgconf-pkg-config ppc64le 1.8.0-3.fc38 copr_base 11 k
popt ppc64le 1.19-1.fc38 copr_base 64 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-srpm-macros noarch 3.11-6.fc38 fedora 25 k
qt5-srpm-macros noarch 5.15.7-1.fc38 copr_base 8.4 k
readline ppc64le 8.2-2.fc38 copr_base 229 k
rpm ppc64le 4.18.0-8.fc38 copr_base 538 k
rpm-build-libs ppc64le 4.18.0-8.fc38 copr_base 103 k
rpm-libs ppc64le 4.18.0-8.fc38 copr_base 355 k
rpm-sequoia ppc64le 1.2.0-1.fc38 copr_base 1.4 M
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 copr_base 9.3 k
rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k
setup noarch 2.14.3-1.fc38 fedora 152 k
sqlite-libs ppc64le 3.40.0-1.fc38 copr_base 776 k
systemd-libs ppc64le 252.4-598.fc38 copr_base 672 k
tzdata noarch 2022g-1.fc38 copr_base 432 k
util-linux-core ppc64le 2.38.1-3.fc38 copr_base 501 k
xxhash-libs ppc64le 0.8.1-3.fc37 fedora 38 k
xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k
zip ppc64le 3.0-35.fc38 fedora 267 k
zlib ppc64le 1.2.13-1.fc38 fedora 100 k
zstd ppc64le 1.5.2-3.fc37 fedora 466 k
Installing Groups:
Buildsystem building group
Transaction Summary
==========================================================================================================================
Install 154 Packages
Total download size: 56 M
Installed size: 328 M
Downloading Packages:
(1/154): alternatives-1.21-1.fc38.ppc64le.rpm 143 kB/s | 41 kB 00:00
(2/154): authselect-1.4.2-1.fc38.ppc64le.rpm 487 kB/s | 141 kB 00:00
(3/154): authselect-libs-1.4.2-1.fc38.ppc64le.r 754 kB/s | 241 kB 00:00
(4/154): bash-5.2.9-3.fc38.ppc64le.rpm 18 MB/s | 1.9 MB 00:00
(5/154): binutils-gold-2.39-6.fc38.ppc64le.rpm 10 MB/s | 1.1 MB 00:00
(6/154): bzip2-1.0.8-12.fc38.ppc64le.rpm 1.1 MB/s | 54 kB 00:00
(7/154): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm 1.0 MB/s | 48 kB 00:00
(8/154): coreutils-9.1-8.fc38.ppc64le.rpm 19 MB/s | 1.3 MB 00:00
(9/154): binutils-2.39-6.fc38.ppc64le.rpm 22 MB/s | 6.2 MB 00:00
(10/154): coreutils-common-9.1-8.fc38.ppc64le.r 17 MB/s | 2.0 MB 00:00
(11/154): cpio-2.13-13.fc38.ppc64le.rpm 2.8 MB/s | 277 kB 00:00
(12/154): cracklib-2.9.7-30.fc38.ppc64le.rpm 2.4 MB/s | 84 kB 00:00
(13/154): curl-7.87.0-1.fc38.ppc64le.rpm 22 MB/s | 348 kB 00:00
(14/154): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le. 36 MB/s | 882 kB 00:00
(15/154): diffutils-3.8-3.fc38.ppc64le.rpm 14 MB/s | 381 kB 00:00
(16/154): dwz-0.15-1.fc38.ppc64le.rpm 8.9 MB/s | 143 kB 00:00
(17/154): ed-1.18-2.fc38.ppc64le.rpm 7.7 MB/s | 82 kB 00:00
(18/154): elfutils-debuginfod-client-0.188-3.fc 3.9 MB/s | 42 kB 00:00
(19/154): elfutils-0.188-3.fc38.ppc64le.rpm 31 MB/s | 555 kB 00:00
(20/154): elfutils-default-yama-scope-0.188-3.f 1.5 MB/s | 16 kB 00:00
(21/154): elfutils-libelf-0.188-3.fc38.ppc64le. 16 MB/s | 205 kB 00:00
(22/154): elfutils-libs-0.188-3.fc38.ppc64le.rp 22 MB/s | 291 kB 00:00
(23/154): file-5.42-4.fc38.ppc64le.rpm 3.7 MB/s | 50 kB 00:00
(24/154): file-libs-5.42-4.fc38.ppc64le.rpm 38 MB/s | 688 kB 00:00
(25/154): findutils-4.9.0-2.fc38.ppc64le.rpm 31 MB/s | 530 kB 00:00
(26/154): gawk-5.1.1-4.fc38.ppc64le.rpm 36 MB/s | 1.0 MB 00:00
(27/154): gdbm-libs-1.23-2.fc38.ppc64le.rpm 3.4 MB/s | 62 kB 00:00
(28/154): gmp-6.2.1-3.fc38.ppc64le.rpm 19 MB/s | 304 kB 00:00
(29/154): grep-3.8-1.fc38.ppc64le.rpm 20 MB/s | 293 kB 00:00
(30/154): gzip-1.12-2.fc38.ppc64le.rpm 10 MB/s | 163 kB 00:00
(31/154): info-7.0.1-1.fc38.ppc64le.rpm 16 MB/s | 201 kB 00:00
(32/154): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.6 MB/s | 33 kB 00:00
(33/154): jansson-2.13.1-5.fc38.ppc64le.rpm 5.0 MB/s | 50 kB 00:00
(34/154): krb5-libs-1.20.1-3.fc38.ppc64le.rpm 38 MB/s | 805 kB 00:00
(35/154): libacl-2.3.1-4.fc38.ppc64le.rpm 2.0 MB/s | 26 kB 00:00
(36/154): libarchive-3.6.1-3.fc38.ppc64le.rpm 28 MB/s | 464 kB 00:00
(37/154): libattr-2.5.1-5.fc38.ppc64le.rpm 2.0 MB/s | 19 kB 00:00
(38/154): libblkid-2.38.1-3.fc38.ppc64le.rpm 11 MB/s | 123 kB 00:00
(39/154): libbrotli-1.0.9-9.fc38.ppc64le.rpm 26 MB/s | 345 kB 00:00
(40/154): libcap-2.48-5.fc38.ppc64le.rpm 7.2 MB/s | 73 kB 00:00
(41/154): libcap-ng-0.8.3-4.fc38.ppc64le.rpm 3.7 MB/s | 34 kB 00:00
(42/154): libcom_err-1.46.5-3.fc38.ppc64le.rpm 3.0 MB/s | 26 kB 00:00
(43/154): libcurl-7.87.0-1.fc38.ppc64le.rpm 26 MB/s | 334 kB 00:00
(44/154): libdb-5.3.28-54.fc38.ppc64le.rpm 37 MB/s | 842 kB 00:00
(45/154): libeconf-0.4.0-4.fc38.ppc64le.rpm 1.7 MB/s | 31 kB 00:00
(46/154): libevent-2.1.12-7.fc38.ppc64le.rpm 22 MB/s | 276 kB 00:00
(47/154): libffi-3.4.4-1.fc38.ppc64le.rpm 4.1 MB/s | 39 kB 00:00
(48/154): libfdisk-2.38.1-3.fc38.ppc64le.rpm 12 MB/s | 177 kB 00:00
(49/154): libidn2-2.3.4-1.fc38.ppc64le.rpm 12 MB/s | 157 kB 00:00
(50/154): libmount-2.38.1-3.fc38.ppc64le.rpm 13 MB/s | 154 kB 00:00
(51/154): libnghttp2-1.51.0-1.fc38.ppc64le.rpm 8.8 MB/s | 85 kB 00:00
(52/154): libnsl2-2.0.0-4.fc38.ppc64le.rpm 3.5 MB/s | 33 kB 00:00
(53/154): libpkgconf-1.8.0-3.fc38.ppc64le.rpm 2.7 MB/s | 40 kB 00:00
(54/154): libsigsegv-2.14-3.fc38.ppc64le.rpm 2.3 MB/s | 28 kB 00:00
(55/154): librtas-2.0.3-1.fc38.ppc64le.rpm 4.2 MB/s | 68 kB 00:00
(56/154): libsmartcols-2.38.1-3.fc38.ppc64le.rp 6.8 MB/s | 70 kB 00:00
(57/154): libssh-0.10.4-2.fc38.ppc64le.rpm 17 MB/s | 236 kB 00:00
(58/154): libssh-config-0.10.4-2.fc38.noarch.rp 863 kB/s | 9.2 kB 00:00
(59/154): libtasn1-4.19.0-1.fc38.ppc64le.rpm 7.6 MB/s | 81 kB 00:00
(60/154): libtirpc-1.3.3-0.fc38.ppc64le.rpm 8.4 MB/s | 108 kB 00:00
(61/154): libunistring-1.0-2.fc38.ppc64le.rpm 31 MB/s | 575 kB 00:00
(62/154): libutempter-1.2.1-7.fc38.ppc64le.rpm 1.8 MB/s | 27 kB 00:00
(63/154): libuuid-2.38.1-3.fc38.ppc64le.rpm 2.5 MB/s | 29 kB 00:00
(64/154): libverto-0.3.2-4.fc38.ppc64le.rpm 2.4 MB/s | 23 kB 00:00
(65/154): libxcrypt-4.4.33-5.fc38.ppc64le.rpm 9.5 MB/s | 133 kB 00:00
(66/154): libxml2-2.10.3-2.fc38.ppc64le.rpm 34 MB/s | 780 kB 00:00
(67/154): lua-libs-5.4.4-6.fc38.ppc64le.rpm 7.3 MB/s | 149 kB 00:00
(68/154): lz4-libs-1.9.3-5.fc38.ppc64le.rpm 6.8 MB/s | 90 kB 00:00
(69/154): mpfr-4.1.1-2.fc38.ppc64le.rpm 29 MB/s | 609 kB 00:00
(70/154): ncurses-base-6.3-5.20221126.fc38.noar 2.9 MB/s | 62 kB 00:00
(71/154): ncurses-libs-6.3-5.20221126.fc38.ppc6 16 MB/s | 374 kB 00:00
(72/154): nettle-3.8-2.fc38.ppc64le.rpm 27 MB/s | 443 kB 00:00
(73/154): openldap-2.6.3-1.fc38.ppc64le.rpm 16 MB/s | 288 kB 00:00
(74/154): openssl-libs-3.0.5-6.fc38.ppc64le.rpm 48 MB/s | 2.2 MB 00:00
(75/154): p11-kit-0.24.1-5.fc38.ppc64le.rpm 10 MB/s | 359 kB 00:00
(76/154): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 4.4 MB/s | 150 kB 00:00
(77/154): pam-1.5.2-15.fc38.ppc64le.rpm 30 MB/s | 569 kB 00:00
(78/154): pam-libs-1.5.2-15.fc38.ppc64le.rpm 3.7 MB/s | 64 kB 00:00
(79/154): patch-2.7.6-17.fc38.ppc64le.rpm 7.5 MB/s | 136 kB 00:00
(80/154): pcre2-10.40-1.fc38.1.ppc64le.rpm 20 MB/s | 242 kB 00:00
(81/154): pcre2-syntax-10.40-1.fc38.1.noarch.rp 12 MB/s | 143 kB 00:00
(82/154): pkgconf-1.8.0-3.fc38.ppc64le.rpm 3.4 MB/s | 43 kB 00:00
(83/154): pkgconf-m4-1.8.0-3.fc38.noarch.rpm 1.6 MB/s | 15 kB 00:00
(84/154): pkgconf-pkg-config-1.8.0-3.fc38.ppc64 1.2 MB/s | 11 kB 00:00
(85/154): popt-1.19-1.fc38.ppc64le.rpm 6.9 MB/s | 64 kB 00:00
(86/154): qt5-srpm-macros-5.15.7-1.fc38.noarch. 944 kB/s | 8.4 kB 00:00
(87/154): readline-8.2-2.fc38.ppc64le.rpm 17 MB/s | 229 kB 00:00
(88/154): rpm-4.18.0-8.fc38.ppc64le.rpm 29 MB/s | 538 kB 00:00
(89/154): rpm-build-4.18.0-8.fc38.ppc64le.rpm 4.6 MB/s | 71 kB 00:00
(90/154): rpm-build-libs-4.18.0-8.fc38.ppc64le. 7.7 MB/s | 103 kB 00:00
(91/154): rpm-libs-4.18.0-8.fc38.ppc64le.rpm 22 MB/s | 355 kB 00:00
(92/154): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm 46 MB/s | 1.4 MB 00:00
(93/154): rpmautospec-rpm-macros-0.3.1-1.fc38.n 336 kB/s | 9.3 kB 00:00
(94/154): sed-4.8-11.fc38.ppc64le.rpm 14 MB/s | 304 kB 00:00
(95/154): shadow-utils-4.13-3.fc38.ppc64le.rpm 42 MB/s | 1.2 MB 00:00
(96/154): sqlite-libs-3.40.0-1.fc38.ppc64le.rpm 23 MB/s | 776 kB 00:00
(97/154): systemd-libs-252.4-598.fc38.ppc64le.r 17 MB/s | 672 kB 00:00
(98/154): tar-1.34-5.fc38.ppc64le.rpm 33 MB/s | 909 kB 00:00
(99/154): tzdata-2022g-1.fc38.noarch.rpm 16 MB/s | 432 kB 00:00
(100/154): unzip-6.0-58.fc38.ppc64le.rpm 9.0 MB/s | 189 kB 00:00
(101/154): which-2.21-36.fc38.ppc64le.rpm 2.2 MB/s | 43 kB 00:00
(102/154): util-linux-core-2.38.1-3.fc38.ppc64l 16 MB/s | 501 kB 00:00
(103/154): util-linux-2.38.1-3.fc38.ppc64le.rpm 45 MB/s | 2.4 MB 00:00
(104/154): libgomp-13.0.0-0.4.fc38.ppc64le.rpm 2.1 MB/s | 314 kB 00:00
(105/154): libgcc-13.0.0-0.4.fc38.ppc64le.rpm 569 kB/s | 88 kB 00:00
(106/154): libstdc++-13.0.0-0.4.fc38.ppc64le.rp 5.3 MB/s | 932 kB 00:00
(107/154): ansible-srpm-macros-1-8.1.fc38.noarc 59 kB/s | 8.6 kB 00:00
(108/154): basesystem-11-14.fc37.noarch.rpm 47 kB/s | 7.0 kB 00:00
(109/154): audit-libs-3.0.9-2.fc38.ppc64le.rpm 321 kB/s | 130 kB 00:00
(110/154): crypto-policies-20221215-1.gita4c31a 365 kB/s | 90 kB 00:00
(111/154): debugedit-5.0-5.fc37.ppc64le.rpm 732 kB/s | 80 kB 00:00
(112/154): efi-srpm-macros-5-6.fc37.noarch.rpm 264 kB/s | 22 kB 00:00
(113/154): fedora-release-38-0.6.noarch.rpm 129 kB/s | 11 kB 00:00
(114/154): ca-certificates-2022.2.54-5.fc37.noa 1.5 MB/s | 829 kB 00:00
(115/154): fedora-release-common-38-0.6.noarch. 257 kB/s | 21 kB 00:00
(116/154): fedora-gpg-keys-38-0.3.noarch.rpm 694 kB/s | 125 kB 00:00
(117/154): fedora-release-identity-basic-38-0.6 157 kB/s | 11 kB 00:00
(118/154): fedora-repos-38-0.3.noarch.rpm 132 kB/s | 10 kB 00:00
(119/154): fedora-repos-rawhide-38-0.3.noarch.r 129 kB/s | 9.7 kB 00:00
(120/154): fpc-srpm-macros-1.3-6.fc37.noarch.rp 103 kB/s | 7.7 kB 00:00
(121/154): fonts-srpm-macros-2.0.5-10.fc38.noar 308 kB/s | 26 kB 00:00
(122/154): filesystem-3.18-2.fc37.ppc64le.rpm 6.6 MB/s | 1.1 MB 00:00
(123/154): ghc-srpm-macros-1.5.0-7.fc37.noarch. 103 kB/s | 7.8 kB 00:00
(124/154): glibc-2.36.9000-19.fc38.ppc64le.rpm 13 MB/s | 2.2 MB 00:00
(125/154): glibc-common-2.36.9000-19.fc38.ppc64 1.4 MB/s | 322 kB 00:00
(126/154): glibc-gconv-extra-2.36.9000-19.fc38. 16 MB/s | 1.9 MB 00:00
(127/154): glibc-minimal-langpack-2.36.9000-19. 390 kB/s | 30 kB 00:00
(128/154): gnat-srpm-macros-4-16.fc37.noarch.rp 112 kB/s | 8.3 kB 00:00
(129/154): gdb-minimal-12.1-10.fc38.ppc64le.rpm 8.0 MB/s | 3.7 MB 00:00
(130/154): go-srpm-macros-3.2.0-1.fc38.noarch.r 351 kB/s | 27 kB 00:00
(131/154): kernel-srpm-macros-1.0-15.fc37.noarc 129 kB/s | 9.4 kB 00:00
(132/154): libpsl-0.21.2-1.fc38.ppc64le.rpm 905 kB/s | 67 kB 00:00
(133/154): libpwquality-1.4.5-1.fc38.ppc64le.rp 1.3 MB/s | 122 kB 00:00
(134/154): libselinux-3.5-0.rc1.1.fc38.ppc64le. 1.3 MB/s | 99 kB 00:00
(135/154): libsemanage-3.5-0.rc1.1.fc38.ppc64le 1.7 MB/s | 131 kB 00:00
(136/154): libzstd-1.5.2-3.fc37.ppc64le.rpm 3.9 MB/s | 316 kB 00:00
(137/154): lua-srpm-macros-1-7.fc37.noarch.rpm 120 kB/s | 8.8 kB 00:00
(138/154): libsepol-3.5-0.rc1.1.fc38.ppc64le.rp 2.7 MB/s | 356 kB 00:00
(139/154): nim-srpm-macros-3-7.fc37.noarch.rpm 116 kB/s | 8.4 kB 00:00
(140/154): ocaml-srpm-macros-7-2.fc37.noarch.rp 183 kB/s | 13 kB 00:00
(141/154): openblas-srpm-macros-2-12.fc37.noarc 102 kB/s | 7.5 kB 00:00
(142/154): package-notes-srpm-macros-0.5-6.fc38 145 kB/s | 11 kB 00:00
(143/154): perl-srpm-macros-1-47.fc38.noarch.rp 112 kB/s | 8.2 kB 00:00
(144/154): publicsuffix-list-dafsa-20221208-1.f 745 kB/s | 59 kB 00:00
(145/154): python-srpm-macros-3.11-6.fc38.noarc 337 kB/s | 25 kB 00:00
(146/154): redhat-rpm-config-236-1.fc38.noarch. 1.1 MB/s | 81 kB 00:00
(147/154): rust-srpm-macros-23-1.fc38.noarch.rp 128 kB/s | 9.4 kB 00:00
(148/154): setup-2.14.3-1.fc38.noarch.rpm 2.0 MB/s | 152 kB 00:00
(149/154): xxhash-libs-0.8.1-3.fc37.ppc64le.rpm 520 kB/s | 38 kB 00:00
(150/154): xz-libs-5.2.9-1.fc38.ppc64le.rpm 1.4 MB/s | 104 kB 00:00
(151/154): xz-5.2.9-1.fc38.ppc64le.rpm 2.6 MB/s | 310 kB 00:00
(152/154): zip-3.0-35.fc38.ppc64le.rpm 3.4 MB/s | 267 kB 00:00
(153/154): zlib-1.2.13-1.fc38.ppc64le.rpm 1.2 MB/s | 100 kB 00:00
(154/154): zstd-1.5.2-3.fc37.ppc64le.rpm 3.4 MB/s | 466 kB 00:00
--------------------------------------------------------------------------------
Total 16 MB/s | 56 MB 00:03
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1
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Verifying : fedora-gpg-keys-38-0.3.noarch 114/154
Verifying : fedora-release-38-0.6.noarch 115/154
Verifying : fedora-release-common-38-0.6.noarch 116/154
Verifying : fedora-release-identity-basic-38-0.6.noarch 117/154
Verifying : fedora-repos-38-0.3.noarch 118/154
Verifying : fedora-repos-rawhide-38-0.3.noarch 119/154
Verifying : filesystem-3.18-2.fc37.ppc64le 120/154
Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 121/154
Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 122/154
Verifying : gdb-minimal-12.1-10.fc38.ppc64le 123/154
Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 124/154
Verifying : glibc-2.36.9000-19.fc38.ppc64le 125/154
Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 126/154
Verifying : glibc-gconv-extra-2.36.9000-19.fc38.ppc64le 127/154
Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 128/154
Verifying : gnat-srpm-macros-4-16.fc37.noarch 129/154
Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 130/154
Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 131/154
Verifying : libpsl-0.21.2-1.fc38.ppc64le 132/154
Verifying : libpwquality-1.4.5-1.fc38.ppc64le 133/154
Verifying : libselinux-3.5-0.rc1.1.fc38.ppc64le 134/154
Verifying : libsemanage-3.5-0.rc1.1.fc38.ppc64le 135/154
Verifying : libsepol-3.5-0.rc1.1.fc38.ppc64le 136/154
Verifying : libzstd-1.5.2-3.fc37.ppc64le 137/154
Verifying : lua-srpm-macros-1-7.fc37.noarch 138/154
Verifying : nim-srpm-macros-3-7.fc37.noarch 139/154
Verifying : ocaml-srpm-macros-7-2.fc37.noarch 140/154
Verifying : openblas-srpm-macros-2-12.fc37.noarch 141/154
Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 142/154
Verifying : perl-srpm-macros-1-47.fc38.noarch 143/154
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 144/154
Verifying : python-srpm-macros-3.11-6.fc38.noarch 145/154
Verifying : redhat-rpm-config-236-1.fc38.noarch 146/154
Verifying : rust-srpm-macros-23-1.fc38.noarch 147/154
Verifying : setup-2.14.3-1.fc38.noarch 148/154
Verifying : xxhash-libs-0.8.1-3.fc37.ppc64le 149/154
Verifying : xz-5.2.9-1.fc38.ppc64le 150/154
Verifying : xz-libs-5.2.9-1.fc38.ppc64le 151/154
Verifying : zip-3.0-35.fc38.ppc64le 152/154
Verifying : zlib-1.2.13-1.fc38.ppc64le 153/154
Verifying : zstd-1.5.2-3.fc37.ppc64le 154/154
Installed:
alternatives-1.21-1.fc38.ppc64le
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-2.fc38.ppc64le
authselect-1.4.2-1.fc38.ppc64le
authselect-libs-1.4.2-1.fc38.ppc64le
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.ppc64le
binutils-2.39-6.fc38.ppc64le
binutils-gold-2.39-6.fc38.ppc64le
bzip2-1.0.8-12.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.ppc64le
coreutils-common-9.1-8.fc38.ppc64le
cpio-2.13-13.fc38.ppc64le
cracklib-2.9.7-30.fc38.ppc64le
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.ppc64le
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
debugedit-5.0-5.fc37.ppc64le
diffutils-3.8-3.fc38.ppc64le
dwz-0.15-1.fc38.ppc64le
ed-1.18-2.fc38.ppc64le
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.ppc64le
elfutils-debuginfod-client-0.188-3.fc38.ppc64le
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.ppc64le
elfutils-libs-0.188-3.fc38.ppc64le
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-4.fc38.ppc64le
file-libs-5.42-4.fc38.ppc64le
filesystem-3.18-2.fc37.ppc64le
findutils-1:4.9.0-2.fc38.ppc64le
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc38.ppc64le
gdb-minimal-12.1-10.fc38.ppc64le
gdbm-libs-1:1.23-2.fc38.ppc64le
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-19.fc38.ppc64le
glibc-common-2.36.9000-19.fc38.ppc64le
glibc-gconv-extra-2.36.9000-19.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
gmp-1:6.2.1-3.fc38.ppc64le
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-1.fc38.ppc64le
gzip-1.12-2.fc38.ppc64le
info-7.0.1-1.fc38.ppc64le
jansson-2.13.1-5.fc38.ppc64le
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
libacl-2.3.1-4.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
libblkid-2.38.1-3.fc38.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
libcap-2.48-5.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
libcurl-7.87.0-1.fc38.ppc64le
libdb-5.3.28-54.fc38.ppc64le
libeconf-0.4.0-4.fc38.ppc64le
libevent-2.1.12-7.fc38.ppc64le
libfdisk-2.38.1-3.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
libgomp-13.0.0-0.4.fc38.ppc64le
libidn2-2.3.4-1.fc38.ppc64le
libmount-2.38.1-3.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
libnsl2-2.0.0-4.fc38.ppc64le
libpkgconf-1.8.0-3.fc38.ppc64le
libpsl-0.21.2-1.fc38.ppc64le
libpwquality-1.4.5-1.fc38.ppc64le
librtas-2.0.3-1.fc38.ppc64le
libselinux-3.5-0.rc1.1.fc38.ppc64le
libsemanage-3.5-0.rc1.1.fc38.ppc64le
libsepol-3.5-0.rc1.1.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
libsmartcols-2.38.1-3.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.ppc64le
libtasn1-4.19.0-1.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
libunistring-1.0-2.fc38.ppc64le
libutempter-1.2.1-7.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
libverto-0.3.2-4.fc38.ppc64le
libxcrypt-4.4.33-5.fc38.ppc64le
libxml2-2.10.3-2.fc38.ppc64le
libzstd-1.5.2-3.fc37.ppc64le
lua-libs-5.4.4-6.fc38.ppc64le
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc38.ppc64le
mpfr-4.1.1-2.fc38.ppc64le
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.ppc64le
openssl-libs-1:3.0.5-6.fc38.ppc64le
p11-kit-0.24.1-5.fc38.ppc64le
p11-kit-trust-0.24.1-5.fc38.ppc64le
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.ppc64le
pam-libs-1.5.2-15.fc38.ppc64le
patch-2.7.6-17.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc38.ppc64le
pkgconf-m4-1.8.0-3.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc38.ppc64le
popt-1.19-1.fc38.ppc64le
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
qt5-srpm-macros-5.15.7-1.fc38.noarch
readline-8.2-2.fc38.ppc64le
redhat-rpm-config-236-1.fc38.noarch
rpm-4.18.0-8.fc38.ppc64le
rpm-build-4.18.0-8.fc38.ppc64le
rpm-build-libs-4.18.0-8.fc38.ppc64le
rpm-libs-4.18.0-8.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc38.ppc64le
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
systemd-libs-252.4-598.fc38.ppc64le
tar-2:1.34-5.fc38.ppc64le
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.ppc64le
util-linux-2.38.1-3.fc38.ppc64le
util-linux-core-2.38.1-3.fc38.ppc64le
which-2.21-36.fc38.ppc64le
xxhash-libs-0.8.1-3.fc37.ppc64le
xz-5.2.9-1.fc38.ppc64le
xz-libs-5.2.9-1.fc38.ppc64le
zip-3.0-35.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
zstd-1.5.2-3.fc37.ppc64le
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: gdbm-libs-1.23-2.fc38.ppc64le
libselinux-3.5-0.rc1.1.fc38.ppc64le
ca-certificates-2022.2.54-5.fc37.noarch
libtasn1-4.19.0-1.fc38.ppc64le
elfutils-debuginfod-client-0.188-3.fc38.ppc64le
sed-4.8-11.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
gawk-5.1.1-4.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
libxml2-2.10.3-2.fc38.ppc64le
util-linux-2.38.1-3.fc38.ppc64le
ansible-srpm-macros-1-8.1.fc38.noarch
cracklib-2.9.7-30.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
libsemanage-3.5-0.rc1.1.fc38.ppc64le
pam-1.5.2-15.fc38.ppc64le
efi-srpm-macros-5-6.fc37.noarch
p11-kit-trust-0.24.1-5.fc38.ppc64le
systemd-libs-252.4-598.fc38.ppc64le
xxhash-libs-0.8.1-3.fc37.ppc64le
fpc-srpm-macros-1.3-6.fc37.noarch
libverto-0.3.2-4.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
librtas-2.0.3-1.fc38.ppc64le
publicsuffix-list-dafsa-20221208-1.fc38.noarch
rpm-libs-4.18.0-8.fc38.ppc64le
libeconf-0.4.0-4.fc38.ppc64le
xz-5.2.9-1.fc38.ppc64le
lua-libs-5.4.4-6.fc38.ppc64le
coreutils-9.1-8.fc38.ppc64le
libdb-5.3.28-54.fc38.ppc64le
tzdata-2022g-1.fc38.noarch
nim-srpm-macros-3-7.fc37.noarch
libpkgconf-1.8.0-3.fc38.ppc64le
fedora-release-identity-basic-38-0.6.noarch
libsepol-3.5-0.rc1.1.fc38.ppc64le
ed-1.18-2.fc38.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
bash-5.2.9-3.fc38.ppc64le
pkgconf-m4-1.8.0-3.fc38.noarch
util-linux-core-2.38.1-3.fc38.ppc64le
jansson-2.13.1-5.fc38.ppc64le
shadow-utils-4.13-3.fc38.ppc64le
popt-1.19-1.fc38.ppc64le
libpsl-0.21.2-1.fc38.ppc64le
gnat-srpm-macros-4-16.fc37.noarch
file-5.42-4.fc38.ppc64le
binutils-gold-2.39-6.fc38.ppc64le
libnsl2-2.0.0-4.fc38.ppc64le
zstd-1.5.2-3.fc37.ppc64le
grep-3.8-1.fc38.ppc64le
openldap-2.6.3-1.fc38.ppc64le
bzip2-1.0.8-12.fc38.ppc64le
lua-srpm-macros-1-7.fc37.noarch
libzstd-1.5.2-3.fc37.ppc64le
ncurses-libs-6.3-5.20221126.fc38.ppc64le
qt5-srpm-macros-5.15.7-1.fc38.noarch
debugedit-5.0-5.fc37.ppc64le
binutils-2.39-6.fc38.ppc64le
xz-libs-5.2.9-1.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
elfutils-libelf-0.188-3.fc38.ppc64le
audit-libs-3.0.9-2.fc38.ppc64le
elfutils-0.188-3.fc38.ppc64le
rpm-build-libs-4.18.0-8.fc38.ppc64le
fedora-release-common-38-0.6.noarch
libssh-config-0.10.4-2.fc38.noarch
fedora-gpg-keys-38-0.3.noarch
patch-2.7.6-17.fc38.ppc64le
zip-3.0-35.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
redhat-rpm-config-236-1.fc38.noarch
libfdisk-2.38.1-3.fc38.ppc64le
libstdc++-13.0.0-0.4.fc38.ppc64le
basesystem-11-14.fc37.noarch
elfutils-libs-0.188-3.fc38.ppc64le
go-srpm-macros-3.2.0-1.fc38.noarch
cpio-2.13-13.fc38.ppc64le
libmount-2.38.1-3.fc38.ppc64le
alternatives-1.21-1.fc38.ppc64le
ncurses-base-6.3-5.20221126.fc38.noarch
perl-srpm-macros-1-47.fc38.noarch
file-libs-5.42-4.fc38.ppc64le
pam-libs-1.5.2-15.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
libunistring-1.0-2.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
diffutils-3.8-3.fc38.ppc64le
setup-2.14.3-1.fc38.noarch
glibc-common-2.36.9000-19.fc38.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
kernel-srpm-macros-1.0-15.fc37.noarch
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc38.ppc64le
info-7.0.1-1.fc38.ppc64le
coreutils-common-9.1-8.fc38.ppc64le
elfutils-default-yama-scope-0.188-3.fc38.noarch
lz4-libs-1.9.3-5.fc38.ppc64le
authselect-1.4.2-1.fc38.ppc64le
gdb-minimal-12.1-10.fc38.ppc64le
libcap-2.48-5.fc38.ppc64le
fedora-repos-38-0.3.noarch
findutils-4.9.0-2.fc38.ppc64le
gpg-pubkey-5323552a-6112bcdc
libsmartcols-2.38.1-3.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
pkgconf-1.8.0-3.fc38.ppc64le
gmp-6.2.1-3.fc38.ppc64le
rpm-4.18.0-8.fc38.ppc64le
dwz-0.15-1.fc38.ppc64le
libevent-2.1.12-7.fc38.ppc64le
libblkid-2.38.1-3.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
libgomp-13.0.0-0.4.fc38.ppc64le
glibc-2.36.9000-19.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
package-notes-srpm-macros-0.5-6.fc38.noarch
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
libcurl-7.87.0-1.fc38.ppc64le
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
libxcrypt-4.4.33-5.fc38.ppc64le
glibc-gconv-extra-2.36.9000-19.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
gzip-1.12-2.fc38.ppc64le
authselect-libs-1.4.2-1.fc38.ppc64le
curl-7.87.0-1.fc38.ppc64le
fonts-srpm-macros-2.0.5-10.fc38.noarch
ghc-srpm-macros-1.5.0-7.fc37.noarch
mpfr-4.1.1-2.fc38.ppc64le
which-2.21-36.fc38.ppc64le
readline-8.2-2.fc38.ppc64le
filesystem-3.18-2.fc37.ppc64le
unzip-6.0-58.fc38.ppc64le
rust-srpm-macros-23-1.fc38.noarch
openblas-srpm-macros-2-12.fc37.noarch
python-srpm-macros-3.11-6.fc38.noarch
p11-kit-0.24.1-5.fc38.ppc64le
libidn2-2.3.4-1.fc38.ppc64le
fedora-repos-rawhide-38-0.3.noarch
fedora-release-38-0.6.noarch
libacl-2.3.1-4.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
openssl-libs-3.0.5-6.fc38.ppc64le
keyutils-libs-1.6.1-5.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
ocaml-srpm-macros-7-2.fc37.noarch
libpwquality-1.4.5-1.fc38.ppc64le
gpg-pubkey-eb10b464-6202d9c6
tar-1.34-5.fc38.ppc64le
rpm-build-4.18.0-8.fc38.ppc64le
libutempter-1.2.1-7.fc38.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
Package glib-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `glib-2.0.pc'
to the PKG_CONFIG_PATH environment variable
Package 'glib-2.0', required by 'virtual:world', not found
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1671753600
Wrote: /builddir/build/SRPMS/wise2-2.4.1-16.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-kxz00o8w/wise2/wise2.spec) Config(child) 2 minutes 13 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/wise2-2.4.1-16.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672363888.896173 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/wise2-2.4.1-16.fc38.src.rpm) Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672363888.896173/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672363888.896173/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 19 kB/s | 3.0 kB 00:00
Copr repository 31 MB/s | 42 MB 00:01
Additional repo https_jakub_fedorapeople_org_fe 9.3 kB/s | 3.0 kB 00:00
fedora 35 kB/s | 6.3 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for wise2-2.4.1-16.fc38.src.rpm
Start: build setup for wise2-2.4.1-16.fc38.src.rpm
Package glib-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `glib-2.0.pc'
to the PKG_CONFIG_PATH environment variable
Package 'glib-2.0', required by 'virtual:world', not found
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1671753600
Wrote: /builddir/build/SRPMS/wise2-2.4.1-16.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 10 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 9.0 kB/s | 3.0 kB 00:00
fedora 23 kB/s | 6.3 kB 00:00
Package pkgconf-pkg-config-1.8.0-3.fc38.ppc64le is already installed.
Dependencies resolved.
==============================================================================================================================
Package Arch Version Repository Size
==============================================================================================================================
Installing:
gcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 M
glib2-devel ppc64le 2.74.1-2.fc38 copr_base 540 k
make ppc64le 1:4.3-11.fc38 copr_base 549 k
perl ppc64le 4:5.36.0-492.fc38 copr_base 16 k
strace ppc64le 6.1-1.fc38 copr_base 1.3 M
Installing dependencies:
annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k
annobin-plugin-gcc ppc64le 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 890 k
cpp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 9.8 M
expat ppc64le 2.5.0-1.fc38 copr_base 117 k
gc ppc64le 8.2.2-1.fc38 copr_base 122 k
gcc-c++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 12 M
gcc-plugin-annobin ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 32 k
glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M
glibc-devel ppc64le 2.36.9000-19.fc38 fedora 546 k
gnupg2 ppc64le 2.3.8-1.fc38 copr_base 2.7 M
gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M
groff-base ppc64le 1.22.4-10.fc38 copr_base 1.1 M
guile22 ppc64le 2.2.7-6.fc38 copr_base 6.5 M
kernel-headers ppc64le 6.1.0-1.fc38 fedora 1.5 M
libasan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 477 k
libassuan ppc64le 2.5.5-5.fc38 copr_base 71 k
libatomic ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 19 k
libb2 ppc64le 0.98.1-7.fc38 copr_base 26 k
libblkid-devel ppc64le 2.38.1-3.fc38 copr_base 17 k
libffi-devel ppc64le 3.4.4-1.fc38 copr_base 29 k
libgcrypt ppc64le 1.10.1-6.fc38 copr_base 596 k
libgpg-error ppc64le 1.46-1.fc38 copr_base 233 k
libksba ppc64le 1.6.3-1.fc38 copr_base 175 k
libmount-devel ppc64le 2.38.1-3.fc38 copr_base 18 k
libmpc ppc64le 1.2.1-5.fc38 copr_base 85 k
libselinux-devel ppc64le 3.5-0.rc1.1.fc38 fedora 150 k
libsepol-devel ppc64le 3.5-0.rc1.1.fc38 fedora 49 k
libstdc++-devel ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M
libtool-ltdl ppc64le 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 41 k
libubsan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 234 k
libxcrypt-devel ppc64le 4.4.33-5.fc38 copr_base 31 k
mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k
ncurses ppc64le 6.3-5.20221126.fc38 copr_base 416 k
npth ppc64le 1.6-10.fc38 copr_base 25 k
pcre2-devel ppc64le 10.40-1.fc38.1 copr_base 474 k
pcre2-utf16 ppc64le 10.40-1.fc38.1 copr_base 221 k
pcre2-utf32 ppc64le 10.40-1.fc38.1 copr_base 209 k
perl-Algorithm-Diff noarch 1.2010-7.fc37 fedora 47 k
perl-Archive-Tar noarch 2.40-490.fc37 fedora 71 k
perl-Archive-Zip noarch 1.68-9.fc37 fedora 113 k
perl-Attribute-Handlers noarch 1.02-492.fc38 copr_base 31 k
perl-AutoLoader noarch 5.74-492.fc38 copr_base 25 k
perl-AutoSplit noarch 5.74-492.fc38 copr_base 25 k
perl-B ppc64le 1.83-492.fc38 copr_base 189 k
perl-Benchmark noarch 1.23-492.fc38 copr_base 30 k
perl-CPAN noarch 2.34-4.fc37 fedora 570 k
perl-CPAN-Meta noarch 2.150010-489.fc37 fedora 195 k
perl-CPAN-Meta-Requirements noarch 2.140-490.fc37 fedora 31 k
perl-CPAN-Meta-YAML noarch 0.018-490.fc37 fedora 26 k
perl-Carp noarch 1.52-489.fc37 fedora 29 k
perl-Class-Struct noarch 0.66-492.fc38 copr_base 26 k
perl-Compress-Bzip2 ppc64le 2.28-11.fc38 copr_base 70 k
perl-Compress-Raw-Bzip2 ppc64le 2.201-2.fc38 copr_base 35 k
perl-Compress-Raw-Lzma ppc64le 2.201-5.fc38 copr_base 50 k
perl-Compress-Raw-Zlib ppc64le 2.202-4.fc38 copr_base 63 k
perl-Config-Extensions noarch 0.03-492.fc38 copr_base 16 k
perl-Config-Perl-V noarch 0.34-1.fc38 fedora 21 k
perl-DBM_Filter noarch 0.06-492.fc38 copr_base 35 k
perl-DB_File ppc64le 1.858-4.fc38 copr_base 82 k
perl-Data-Dumper ppc64le 2.184-490.fc38 copr_base 58 k
perl-Data-OptList noarch 0.112-5.fc37 fedora 27 k
perl-Data-Section noarch 0.200007-17.fc37 fedora 25 k
perl-Devel-PPPort ppc64le 3.68-490.fc38 copr_base 221 k
perl-Devel-Peek ppc64le 1.32-492.fc38 copr_base 37 k
perl-Devel-SelfStubber noarch 1.06-492.fc38 copr_base 18 k
perl-Devel-Size ppc64le 0.83-13.fc38 copr_base 31 k
perl-Digest noarch 1.20-489.fc37 fedora 26 k
perl-Digest-MD5 ppc64le 2.58-489.fc38 copr_base 36 k
perl-Digest-SHA ppc64le 1:6.03-1.fc38 copr_base 64 k
perl-Digest-SHA1 ppc64le 2.13-37.fc38 copr_base 53 k
perl-DirHandle noarch 1.05-492.fc38 copr_base 16 k
perl-Dumpvalue noarch 2.27-492.fc38 copr_base 22 k
perl-DynaLoader ppc64le 1.52-492.fc38 copr_base 29 k
perl-Encode ppc64le 4:3.19-492.fc38 copr_base 1.7 M
perl-Encode-devel ppc64le 4:3.19-492.fc38 copr_base 42 k
perl-English noarch 1.11-492.fc38 copr_base 17 k
perl-Env noarch 1.05-489.fc37 fedora 20 k
perl-Errno ppc64le 1.36-492.fc38 copr_base 18 k
perl-Exporter noarch 5.77-489.fc37 fedora 31 k
perl-ExtUtils-CBuilder noarch 1:0.280236-490.fc38 copr_base 46 k
perl-ExtUtils-Command noarch 2:7.64-490.fc37 fedora 14 k
perl-ExtUtils-Constant noarch 0.25-492.fc38 copr_base 50 k
perl-ExtUtils-Embed noarch 1.35-492.fc38 copr_base 21 k
perl-ExtUtils-Install noarch 2.20-489.fc37 fedora 44 k
perl-ExtUtils-MM-Utils noarch 2:7.64-490.fc37 fedora 12 k
perl-ExtUtils-MakeMaker noarch 2:7.64-490.fc37 fedora 301 k
perl-ExtUtils-Manifest noarch 1:1.73-489.fc37 fedora 34 k
perl-ExtUtils-Miniperl noarch 1.11-492.fc38 copr_base 18 k
perl-ExtUtils-ParseXS noarch 1:3.45-489.fc37 fedora 188 k
perl-Fcntl ppc64le 1.15-492.fc38 copr_base 25 k
perl-File-Basename noarch 2.85-492.fc38 copr_base 21 k
perl-File-Compare noarch 1.100.700-492.fc38 copr_base 17 k
perl-File-Copy noarch 2.39-492.fc38 copr_base 23 k
perl-File-DosGlob ppc64le 1.12-492.fc38 copr_base 23 k
perl-File-Fetch noarch 1.04-489.fc37 fedora 31 k
perl-File-Find noarch 1.40-492.fc38 copr_base 29 k
perl-File-HomeDir noarch 1.006-7.fc37 fedora 62 k
perl-File-Path noarch 2.18-489.fc37 fedora 35 k
perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k
perl-File-Which noarch 1.27-6.fc37 fedora 22 k
perl-File-stat noarch 1.12-492.fc38 copr_base 21 k
perl-FileCache noarch 1.10-492.fc38 copr_base 18 k
perl-FileHandle noarch 2.03-492.fc38 copr_base 19 k
perl-Filter ppc64le 2:1.64-1.fc38 copr_base 81 k
perl-Filter-Simple noarch 0.96-489.fc37 fedora 27 k
perl-FindBin noarch 1.53-492.fc38 copr_base 17 k
perl-GDBM_File ppc64le 1:1.23-492.fc38 copr_base 48 k
perl-Getopt-Long noarch 1:2.54-1.fc38 fedora 60 k
perl-Getopt-Std noarch 1.13-492.fc38 copr_base 19 k
perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k
perl-Hash-Util ppc64le 0.28-492.fc38 copr_base 39 k
perl-Hash-Util-FieldHash ppc64le 1.26-492.fc38 copr_base 43 k
perl-I18N-Collate noarch 1.02-492.fc38 copr_base 18 k
perl-I18N-LangTags noarch 0.45-492.fc38 copr_base 58 k
perl-I18N-Langinfo ppc64le 0.21-492.fc38 copr_base 27 k
perl-IO ppc64le 1.50-492.fc38 copr_base 91 k
perl-IO-Compress noarch 2.201-3.fc37 fedora 273 k
perl-IO-Compress-Lzma noarch 2.201-2.fc37 fedora 79 k
perl-IO-Socket-IP noarch 0.41-490.fc37 fedora 42 k
perl-IO-Zlib noarch 1:1.11-489.fc37 fedora 19 k
perl-IPC-Cmd noarch 2:1.04-490.fc37 fedora 40 k
perl-IPC-Open3 noarch 1.22-492.fc38 copr_base 26 k
perl-IPC-SysV ppc64le 2.09-490.fc38 copr_base 41 k
perl-IPC-System-Simple noarch 1.30-9.fc37 fedora 39 k
perl-Importer noarch 0.026-8.fc38 fedora 39 k
perl-JSON-PP noarch 1:4.15-1.fc38 fedora 67 k
perl-Locale-Maketext noarch 1.32-1.fc38 fedora 95 k
perl-Locale-Maketext-Simple noarch 1:0.21-492.fc38 copr_base 21 k
perl-MIME-Base64 ppc64le 3.16-489.fc38 copr_base 31 k
perl-MRO-Compat noarch 0.15-4.fc37 fedora 26 k
perl-Math-BigInt noarch 1:1.9998.37-2.fc37 fedora 206 k
perl-Math-BigInt-FastCalc ppc64le 0.501.300-3.fc38 copr_base 29 k
perl-Math-BigRat noarch 0.2624-2.fc37 fedora 42 k
perl-Math-Complex noarch 1.59-492.fc38 copr_base 50 k
perl-Memoize noarch 1.03-492.fc38 copr_base 60 k
perl-Module-Build noarch 2:0.42.32-1.fc38 fedora 245 k
perl-Module-CoreList noarch 1:5.20221220-1.fc38 fedora 84 k
perl-Module-CoreList-tools noarch 1:5.20221220-1.fc38 fedora 18 k
perl-Module-Load noarch 1:0.36-489.fc37 fedora 17 k
perl-Module-Load-Conditional noarch 0.74-489.fc37 fedora 22 k
perl-Module-Loaded noarch 1:0.08-492.fc38 copr_base 17 k
perl-Module-Metadata noarch 1.000037-489.fc37 fedora 35 k
perl-Module-Signature noarch 0.88-4.fc37 fedora 83 k
perl-NDBM_File ppc64le 1.15-492.fc38 copr_base 26 k
perl-NEXT noarch 0.69-492.fc38 copr_base 24 k
perl-Net noarch 1.03-492.fc38 copr_base 29 k
perl-Net-Ping noarch 2.75-2.fc38 fedora 50 k
perl-ODBM_File ppc64le 1.17-492.fc38 copr_base 26 k
perl-Object-HashBase noarch 0.009-11.fc38 fedora 25 k
perl-Opcode ppc64le 1.57-492.fc38 copr_base 42 k
perl-POSIX ppc64le 2.03-492.fc38 copr_base 123 k
perl-Package-Generator noarch 1.106-26.fc37 fedora 23 k
perl-Params-Check noarch 1:0.38-489.fc37 fedora 22 k
perl-Params-Util ppc64le 1.102-9.fc38 copr_base 33 k
perl-PathTools ppc64le 3.84-489.fc38 copr_base 83 k
perl-Perl-OSType noarch 1.010-490.fc38 copr_base 23 k
perl-PerlIO-via-QuotedPrint noarch 0.10-3.fc37 fedora 22 k
perl-Pod-Checker noarch 4:1.75-3.fc37 fedora 32 k
perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k
perl-Pod-Functions noarch 1.14-492.fc38 copr_base 17 k
perl-Pod-Html noarch 1.33-492.fc38 copr_base 35 k
perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k
perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k
perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k
perl-Safe noarch 2.43-492.fc38 copr_base 28 k
perl-Scalar-List-Utils ppc64le 5:1.63-489.fc38 copr_base 75 k
perl-Search-Dict noarch 1.07-492.fc38 copr_base 16 k
perl-SelectSaver noarch 1.02-492.fc38 copr_base 15 k
perl-SelfLoader noarch 1.26-492.fc38 copr_base 25 k
perl-Socket ppc64le 4:2.036-1.fc38 copr_base 57 k
perl-Software-License noarch 0.104002-2.fc37 fedora 145 k
perl-Storable ppc64le 1:3.26-489.fc38 copr_base 101 k
perl-Sub-Exporter noarch 0.988-5.fc37 fedora 78 k
perl-Sub-Install noarch 0.928-33.fc37 fedora 22 k
perl-Symbol noarch 1.09-492.fc38 copr_base 18 k
perl-Sys-Hostname ppc64le 1.24-492.fc38 copr_base 21 k
perl-Sys-Syslog ppc64le 0.36-490.fc38 copr_base 47 k
perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k
perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k
perl-Term-Complete noarch 1.403-492.fc38 copr_base 16 k
perl-Term-ReadLine noarch 1.17-492.fc38 copr_base 22 k
perl-Term-Table noarch 0.016-5.fc38 fedora 34 k
perl-Test noarch 1.31-492.fc38 copr_base 32 k
perl-Test-Harness noarch 1:3.44-490.fc37 fedora 288 k
perl-Test-Simple noarch 3:1.302191-2.fc37 fedora 592 k
perl-Text-Abbrev noarch 1.02-492.fc38 copr_base 16 k
perl-Text-Balanced noarch 2.06-2.fc37 fedora 49 k
perl-Text-Diff noarch 1.45-16.fc37 fedora 41 k
perl-Text-Glob noarch 0.11-19.fc38 fedora 13 k
perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k
perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k
perl-Text-Template noarch 1.61-1.fc38 fedora 60 k
perl-Thread noarch 3.05-492.fc38 copr_base 21 k
perl-Thread-Queue noarch 3.14-489.fc37 fedora 21 k
perl-Thread-Semaphore noarch 2.13-492.fc38 copr_base 19 k
perl-Tie noarch 4.6-492.fc38 copr_base 35 k
perl-Tie-File noarch 1.06-492.fc38 copr_base 47 k
perl-Tie-Memoize noarch 1.1-492.fc38 copr_base 18 k
perl-Tie-RefHash noarch 1.40-489.fc37 fedora 23 k
perl-Time noarch 1.03-492.fc38 copr_base 22 k
perl-Time-HiRes ppc64le 4:1.9770-489.fc38 copr_base 59 k
perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k
perl-Time-Piece ppc64le 1.3401-492.fc38 copr_base 45 k
perl-URI noarch 5.17-1.fc38 fedora 123 k
perl-Unicode-Collate ppc64le 1.31-489.fc38 copr_base 716 k
perl-Unicode-Normalize ppc64le 1.31-489.fc38 copr_base 91 k
perl-Unicode-UCD noarch 0.78-492.fc38 copr_base 82 k
perl-User-pwent noarch 1.03-492.fc38 copr_base 24 k
perl-autodie noarch 2.34-490.fc37 fedora 99 k
perl-autouse noarch 1.11-492.fc38 copr_base 17 k
perl-base noarch 2.27-492.fc38 copr_base 20 k
perl-bignum noarch 0.66-5.fc37 fedora 50 k
perl-blib noarch 1.07-492.fc38 copr_base 16 k
perl-constant noarch 1.33-490.fc37 fedora 23 k
perl-debugger noarch 1.60-492.fc38 copr_base 138 k
perl-deprecate noarch 0.04-492.fc38 copr_base 18 k
perl-devel ppc64le 4:5.36.0-492.fc38 copr_base 700 k
perl-diagnostics noarch 1.39-492.fc38 copr_base 214 k
perl-doc noarch 5.36.0-492.fc38 copr_base 4.7 M
perl-encoding ppc64le 4:3.00-492.fc38 copr_base 64 k
perl-encoding-warnings noarch 0.13-492.fc38 copr_base 20 k
perl-experimental noarch 0.030-1.fc38 fedora 22 k
perl-fields noarch 2.27-492.fc38 copr_base 20 k
perl-filetest noarch 1.03-492.fc38 copr_base 18 k
perl-if noarch 0.61.000-492.fc38 copr_base 17 k
perl-inc-latest noarch 2:0.500-23.fc37 fedora 24 k
perl-interpreter ppc64le 4:5.36.0-492.fc38 copr_base 76 k
perl-less noarch 0.03-492.fc38 copr_base 17 k
perl-lib ppc64le 0.65-492.fc38 copr_base 18 k
perl-libnet noarch 3.14-490.fc37 fedora 132 k
perl-libnetcfg noarch 4:5.36.0-492.fc38 copr_base 20 k
perl-libs ppc64le 4:5.36.0-492.fc38 copr_base 2.2 M
perl-local-lib noarch 2.000029-3.fc37 fedora 67 k
perl-locale noarch 1.10-492.fc38 copr_base 17 k
perl-macros noarch 4:5.36.0-492.fc38 copr_base 15 k
perl-meta-notation noarch 5.36.0-492.fc38 copr_base 13 k
perl-mro ppc64le 1.26-492.fc38 copr_base 33 k
perl-open noarch 1.13-492.fc38 copr_base 20 k
perl-overload noarch 1.35-492.fc38 copr_base 49 k
perl-overloading noarch 0.02-492.fc38 copr_base 16 k
perl-parent noarch 1:0.239-1.fc38 fedora 14 k
perl-perlfaq noarch 5.20210520-489.fc37 fedora 379 k
perl-ph ppc64le 5.36.0-492.fc38 copr_base 42 k
perl-podlators noarch 1:5.00-1.fc38 fedora 127 k
perl-sigtrap noarch 1.10-492.fc38 copr_base 19 k
perl-sort noarch 2.05-492.fc38 copr_base 17 k
perl-subs noarch 1.04-492.fc38 copr_base 15 k
perl-threads ppc64le 1:2.27-489.fc38 copr_base 58 k
perl-threads-shared ppc64le 1.64-489.fc38 copr_base 46 k
perl-utils noarch 5.36.0-492.fc38 copr_base 59 k
perl-vars noarch 1.05-492.fc38 copr_base 16 k
perl-version ppc64le 8:0.99.29-490.fc38 copr_base 64 k
perl-vmsish noarch 1.04-492.fc38 copr_base 18 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 ppc64le 3.11.1-1.fc38 copr_base 28 k
python3-libs ppc64le 3.11.1-1.fc38 copr_base 9.3 M
python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k
sysprof-capture-devel ppc64le 3.46.0-1.fc38 copr_base 66 k
systemtap-sdt-devel ppc64le 4.8~pre16650659g6a096a7d-1.fc38 copr_base 73 k
zlib-devel ppc64le 1.2.13-1.fc38 fedora 45 k
Transaction Summary
==============================================================================================================================
Install 266 Packages
Total download size: 111 M
Installed size: 415 M
Downloading Packages:
(1/266): gc-8.2.2-1.fc38.ppc64le.rpm 419 kB/s | 122 kB 00:00
(2/266): expat-2.5.0-1.fc38.ppc64le.rpm 397 kB/s | 117 kB 00:00
(3/266): glib2-2.74.1-2.fc38.ppc64le.rpm 6.2 MB/s | 2.8 MB 00:00
(4/266): glib2-devel-2.74.1-2.fc38.ppc64le.rpm 2.3 MB/s | 540 kB 00:00
(5/266): gnupg2-2.3.8-1.fc38.ppc64le.rpm 9.3 MB/s | 2.7 MB 00:00
(6/266): gnutls-3.7.8-9.fc38.ppc64le.rpm 6.9 MB/s | 1.1 MB 00:00
(7/266): groff-base-1.22.4-10.fc38.ppc64le.rpm 8.1 MB/s | 1.1 MB 00:00
(8/266): libassuan-2.5.5-5.fc38.ppc64le.rpm 1.6 MB/s | 71 kB 00:00
(9/266): libb2-0.98.1-7.fc38.ppc64le.rpm 614 kB/s | 26 kB 00:00
(10/266): libblkid-devel-2.38.1-3.fc38.ppc64le. 410 kB/s | 17 kB 00:00
(11/266): libffi-devel-3.4.4-1.fc38.ppc64le.rpm 687 kB/s | 29 kB 00:00
(12/266): libgcrypt-1.10.1-6.fc38.ppc64le.rpm 12 MB/s | 596 kB 00:00
(13/266): libgpg-error-1.46-1.fc38.ppc64le.rpm 7.2 MB/s | 233 kB 00:00
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(266/266): zlib-devel-1.2.13-1.fc38.ppc64le.rpm 578 kB/s | 45 kB 00:00
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Total 18 MB/s | 111 MB 00:06
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Verifying : perl-Text-Glob-0.11-19.fc38.noarch 245/266
Verifying : perl-Text-ParseWords-3.31-489.fc37.noarch 246/266
Verifying : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 247/266
Verifying : perl-Text-Template-1.61-1.fc38.noarch 248/266
Verifying : perl-Thread-Queue-3.14-489.fc37.noarch 249/266
Verifying : perl-Tie-RefHash-1.40-489.fc37.noarch 250/266
Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 251/266
Verifying : perl-URI-5.17-1.fc38.noarch 252/266
Verifying : perl-autodie-2.34-490.fc37.noarch 253/266
Verifying : perl-bignum-0.66-5.fc37.noarch 254/266
Verifying : perl-constant-1.33-490.fc37.noarch 255/266
Verifying : perl-experimental-0.030-1.fc38.noarch 256/266
Verifying : perl-inc-latest-2:0.500-23.fc37.noarch 257/266
Verifying : perl-libnet-3.14-490.fc37.noarch 258/266
Verifying : perl-local-lib-2.000029-3.fc37.noarch 259/266
Verifying : perl-parent-1:0.239-1.fc38.noarch 260/266
Verifying : perl-perlfaq-5.20210520-489.fc37.noarch 261/266
Verifying : perl-podlators-1:5.00-1.fc38.noarch 262/266
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 263/266
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 264/266
Verifying : python3-pyparsing-3.0.9-2.fc37.noarch 265/266
Verifying : zlib-devel-1.2.13-1.fc38.ppc64le 266/266
Installed:
annobin-docs-10.99-1.0.1.fc38.noarch
annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le
cpp-13.0.0-0.4.fc38.ppc64le
expat-2.5.0-1.fc38.ppc64le
gc-8.2.2-1.fc38.ppc64le
gcc-13.0.0-0.4.fc38.ppc64le
gcc-c++-13.0.0-0.4.fc38.ppc64le
gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le
glib2-2.74.1-2.fc38.ppc64le
glib2-devel-2.74.1-2.fc38.ppc64le
glibc-devel-2.36.9000-19.fc38.ppc64le
gnupg2-2.3.8-1.fc38.ppc64le
gnutls-3.7.8-9.fc38.ppc64le
groff-base-1.22.4-10.fc38.ppc64le
guile22-2.2.7-6.fc38.ppc64le
kernel-headers-6.1.0-1.fc38.ppc64le
libasan-13.0.0-0.4.fc38.ppc64le
libassuan-2.5.5-5.fc38.ppc64le
libatomic-13.0.0-0.4.fc38.ppc64le
libb2-0.98.1-7.fc38.ppc64le
libblkid-devel-2.38.1-3.fc38.ppc64le
libffi-devel-3.4.4-1.fc38.ppc64le
libgcrypt-1.10.1-6.fc38.ppc64le
libgpg-error-1.46-1.fc38.ppc64le
libksba-1.6.3-1.fc38.ppc64le
libmount-devel-2.38.1-3.fc38.ppc64le
libmpc-1.2.1-5.fc38.ppc64le
libselinux-devel-3.5-0.rc1.1.fc38.ppc64le
libsepol-devel-3.5-0.rc1.1.fc38.ppc64le
libstdc++-devel-13.0.0-0.4.fc38.ppc64le
libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le
libubsan-13.0.0-0.4.fc38.ppc64le
libxcrypt-devel-4.4.33-5.fc38.ppc64le
make-1:4.3-11.fc38.ppc64le
mpdecimal-2.5.1-4.fc38.ppc64le
ncurses-6.3-5.20221126.fc38.ppc64le
npth-1.6-10.fc38.ppc64le
pcre2-devel-10.40-1.fc38.1.ppc64le
pcre2-utf16-10.40-1.fc38.1.ppc64le
pcre2-utf32-10.40-1.fc38.1.ppc64le
perl-4:5.36.0-492.fc38.ppc64le
perl-Algorithm-Diff-1.2010-7.fc37.noarch
perl-Archive-Tar-2.40-490.fc37.noarch
perl-Archive-Zip-1.68-9.fc37.noarch
perl-Attribute-Handlers-1.02-492.fc38.noarch
perl-AutoLoader-5.74-492.fc38.noarch
perl-AutoSplit-5.74-492.fc38.noarch
perl-B-1.83-492.fc38.ppc64le
perl-Benchmark-1.23-492.fc38.noarch
perl-CPAN-2.34-4.fc37.noarch
perl-CPAN-Meta-2.150010-489.fc37.noarch
perl-CPAN-Meta-Requirements-2.140-490.fc37.noarch
perl-CPAN-Meta-YAML-0.018-490.fc37.noarch
perl-Carp-1.52-489.fc37.noarch
perl-Class-Struct-0.66-492.fc38.noarch
perl-Compress-Bzip2-2.28-11.fc38.ppc64le
perl-Compress-Raw-Bzip2-2.201-2.fc38.ppc64le
perl-Compress-Raw-Lzma-2.201-5.fc38.ppc64le
perl-Compress-Raw-Zlib-2.202-4.fc38.ppc64le
perl-Config-Extensions-0.03-492.fc38.noarch
perl-Config-Perl-V-0.34-1.fc38.noarch
perl-DBM_Filter-0.06-492.fc38.noarch
perl-DB_File-1.858-4.fc38.ppc64le
perl-Data-Dumper-2.184-490.fc38.ppc64le
perl-Data-OptList-0.112-5.fc37.noarch
perl-Data-Section-0.200007-17.fc37.noarch
perl-Devel-PPPort-3.68-490.fc38.ppc64le
perl-Devel-Peek-1.32-492.fc38.ppc64le
perl-Devel-SelfStubber-1.06-492.fc38.noarch
perl-Devel-Size-0.83-13.fc38.ppc64le
perl-Digest-1.20-489.fc37.noarch
perl-Digest-MD5-2.58-489.fc38.ppc64le
perl-Digest-SHA-1:6.03-1.fc38.ppc64le
perl-Digest-SHA1-2.13-37.fc38.ppc64le
perl-DirHandle-1.05-492.fc38.noarch
perl-Dumpvalue-2.27-492.fc38.noarch
perl-DynaLoader-1.52-492.fc38.ppc64le
perl-Encode-4:3.19-492.fc38.ppc64le
perl-Encode-devel-4:3.19-492.fc38.ppc64le
perl-English-1.11-492.fc38.noarch
perl-Env-1.05-489.fc37.noarch
perl-Errno-1.36-492.fc38.ppc64le
perl-Exporter-5.77-489.fc37.noarch
perl-ExtUtils-CBuilder-1:0.280236-490.fc38.noarch
perl-ExtUtils-Command-2:7.64-490.fc37.noarch
perl-ExtUtils-Constant-0.25-492.fc38.noarch
perl-ExtUtils-Embed-1.35-492.fc38.noarch
perl-ExtUtils-Install-2.20-489.fc37.noarch
perl-ExtUtils-MM-Utils-2:7.64-490.fc37.noarch
perl-ExtUtils-MakeMaker-2:7.64-490.fc37.noarch
perl-ExtUtils-Manifest-1:1.73-489.fc37.noarch
perl-ExtUtils-Miniperl-1.11-492.fc38.noarch
perl-ExtUtils-ParseXS-1:3.45-489.fc37.noarch
perl-Fcntl-1.15-492.fc38.ppc64le
perl-File-Basename-2.85-492.fc38.noarch
perl-File-Compare-1.100.700-492.fc38.noarch
perl-File-Copy-2.39-492.fc38.noarch
perl-File-DosGlob-1.12-492.fc38.ppc64le
perl-File-Fetch-1.04-489.fc37.noarch
perl-File-Find-1.40-492.fc38.noarch
perl-File-HomeDir-1.006-7.fc37.noarch
perl-File-Path-2.18-489.fc37.noarch
perl-File-Temp-1:0.231.100-489.fc37.noarch
perl-File-Which-1.27-6.fc37.noarch
perl-File-stat-1.12-492.fc38.noarch
perl-FileCache-1.10-492.fc38.noarch
perl-FileHandle-2.03-492.fc38.noarch
perl-Filter-2:1.64-1.fc38.ppc64le
perl-Filter-Simple-0.96-489.fc37.noarch
perl-FindBin-1.53-492.fc38.noarch
perl-GDBM_File-1:1.23-492.fc38.ppc64le
perl-Getopt-Long-1:2.54-1.fc38.noarch
perl-Getopt-Std-1.13-492.fc38.noarch
perl-HTTP-Tiny-0.082-1.fc37.noarch
perl-Hash-Util-0.28-492.fc38.ppc64le
perl-Hash-Util-FieldHash-1.26-492.fc38.ppc64le
perl-I18N-Collate-1.02-492.fc38.noarch
perl-I18N-LangTags-0.45-492.fc38.noarch
perl-I18N-Langinfo-0.21-492.fc38.ppc64le
perl-IO-1.50-492.fc38.ppc64le
perl-IO-Compress-2.201-3.fc37.noarch
perl-IO-Compress-Lzma-2.201-2.fc37.noarch
perl-IO-Socket-IP-0.41-490.fc37.noarch
perl-IO-Zlib-1:1.11-489.fc37.noarch
perl-IPC-Cmd-2:1.04-490.fc37.noarch
perl-IPC-Open3-1.22-492.fc38.noarch
perl-IPC-SysV-2.09-490.fc38.ppc64le
perl-IPC-System-Simple-1.30-9.fc37.noarch
perl-Importer-0.026-8.fc38.noarch
perl-JSON-PP-1:4.15-1.fc38.noarch
perl-Locale-Maketext-1.32-1.fc38.noarch
perl-Locale-Maketext-Simple-1:0.21-492.fc38.noarch
perl-MIME-Base64-3.16-489.fc38.ppc64le
perl-MRO-Compat-0.15-4.fc37.noarch
perl-Math-BigInt-1:1.9998.37-2.fc37.noarch
perl-Math-BigInt-FastCalc-0.501.300-3.fc38.ppc64le
perl-Math-BigRat-0.2624-2.fc37.noarch
perl-Math-Complex-1.59-492.fc38.noarch
perl-Memoize-1.03-492.fc38.noarch
perl-Module-Build-2:0.42.32-1.fc38.noarch
perl-Module-CoreList-1:5.20221220-1.fc38.noarch
perl-Module-CoreList-tools-1:5.20221220-1.fc38.noarch
perl-Module-Load-1:0.36-489.fc37.noarch
perl-Module-Load-Conditional-0.74-489.fc37.noarch
perl-Module-Loaded-1:0.08-492.fc38.noarch
perl-Module-Metadata-1.000037-489.fc37.noarch
perl-Module-Signature-0.88-4.fc37.noarch
perl-NDBM_File-1.15-492.fc38.ppc64le
perl-NEXT-0.69-492.fc38.noarch
perl-Net-1.03-492.fc38.noarch
perl-Net-Ping-2.75-2.fc38.noarch
perl-ODBM_File-1.17-492.fc38.ppc64le
perl-Object-HashBase-0.009-11.fc38.noarch
perl-Opcode-1.57-492.fc38.ppc64le
perl-POSIX-2.03-492.fc38.ppc64le
perl-Package-Generator-1.106-26.fc37.noarch
perl-Params-Check-1:0.38-489.fc37.noarch
perl-Params-Util-1.102-9.fc38.ppc64le
perl-PathTools-3.84-489.fc38.ppc64le
perl-Perl-OSType-1.010-490.fc38.noarch
perl-PerlIO-via-QuotedPrint-0.10-3.fc37.noarch
perl-Pod-Checker-4:1.75-3.fc37.noarch
perl-Pod-Escapes-1:1.07-489.fc37.noarch
perl-Pod-Functions-1.14-492.fc38.noarch
perl-Pod-Html-1.33-492.fc38.noarch
perl-Pod-Perldoc-3.28.01-490.fc37.noarch
perl-Pod-Simple-1:3.43-490.fc37.noarch
perl-Pod-Usage-4:2.03-3.fc37.noarch
perl-Safe-2.43-492.fc38.noarch
perl-Scalar-List-Utils-5:1.63-489.fc38.ppc64le
perl-Search-Dict-1.07-492.fc38.noarch
perl-SelectSaver-1.02-492.fc38.noarch
perl-SelfLoader-1.26-492.fc38.noarch
perl-Socket-4:2.036-1.fc38.ppc64le
perl-Software-License-0.104002-2.fc37.noarch
perl-Storable-1:3.26-489.fc38.ppc64le
perl-Sub-Exporter-0.988-5.fc37.noarch
perl-Sub-Install-0.928-33.fc37.noarch
perl-Symbol-1.09-492.fc38.noarch
perl-Sys-Hostname-1.24-492.fc38.ppc64le
perl-Sys-Syslog-0.36-490.fc38.ppc64le
perl-Term-ANSIColor-5.01-490.fc37.noarch
perl-Term-Cap-1.17-489.fc37.noarch
perl-Term-Complete-1.403-492.fc38.noarch
perl-Term-ReadLine-1.17-492.fc38.noarch
perl-Term-Table-0.016-5.fc38.noarch
perl-Test-1.31-492.fc38.noarch
perl-Test-Harness-1:3.44-490.fc37.noarch
perl-Test-Simple-3:1.302191-2.fc37.noarch
perl-Text-Abbrev-1.02-492.fc38.noarch
perl-Text-Balanced-2.06-2.fc37.noarch
perl-Text-Diff-1.45-16.fc37.noarch
perl-Text-Glob-0.11-19.fc38.noarch
perl-Text-ParseWords-3.31-489.fc37.noarch
perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch
perl-Text-Template-1.61-1.fc38.noarch
perl-Thread-3.05-492.fc38.noarch
perl-Thread-Queue-3.14-489.fc37.noarch
perl-Thread-Semaphore-2.13-492.fc38.noarch
perl-Tie-4.6-492.fc38.noarch
perl-Tie-File-1.06-492.fc38.noarch
perl-Tie-Memoize-1.1-492.fc38.noarch
perl-Tie-RefHash-1.40-489.fc37.noarch
perl-Time-1.03-492.fc38.noarch
perl-Time-HiRes-4:1.9770-489.fc38.ppc64le
perl-Time-Local-2:1.300-489.fc37.noarch
perl-Time-Piece-1.3401-492.fc38.ppc64le
perl-URI-5.17-1.fc38.noarch
perl-Unicode-Collate-1.31-489.fc38.ppc64le
perl-Unicode-Normalize-1.31-489.fc38.ppc64le
perl-Unicode-UCD-0.78-492.fc38.noarch
perl-User-pwent-1.03-492.fc38.noarch
perl-autodie-2.34-490.fc37.noarch
perl-autouse-1.11-492.fc38.noarch
perl-base-2.27-492.fc38.noarch
perl-bignum-0.66-5.fc37.noarch
perl-blib-1.07-492.fc38.noarch
perl-constant-1.33-490.fc37.noarch
perl-debugger-1.60-492.fc38.noarch
perl-deprecate-0.04-492.fc38.noarch
perl-devel-4:5.36.0-492.fc38.ppc64le
perl-diagnostics-1.39-492.fc38.noarch
perl-doc-5.36.0-492.fc38.noarch
perl-encoding-4:3.00-492.fc38.ppc64le
perl-encoding-warnings-0.13-492.fc38.noarch
perl-experimental-0.030-1.fc38.noarch
perl-fields-2.27-492.fc38.noarch
perl-filetest-1.03-492.fc38.noarch
perl-if-0.61.000-492.fc38.noarch
perl-inc-latest-2:0.500-23.fc37.noarch
perl-interpreter-4:5.36.0-492.fc38.ppc64le
perl-less-0.03-492.fc38.noarch
perl-lib-0.65-492.fc38.ppc64le
perl-libnet-3.14-490.fc37.noarch
perl-libnetcfg-4:5.36.0-492.fc38.noarch
perl-libs-4:5.36.0-492.fc38.ppc64le
perl-local-lib-2.000029-3.fc37.noarch
perl-locale-1.10-492.fc38.noarch
perl-macros-4:5.36.0-492.fc38.noarch
perl-meta-notation-5.36.0-492.fc38.noarch
perl-mro-1.26-492.fc38.ppc64le
perl-open-1.13-492.fc38.noarch
perl-overload-1.35-492.fc38.noarch
perl-overloading-0.02-492.fc38.noarch
perl-parent-1:0.239-1.fc38.noarch
perl-perlfaq-5.20210520-489.fc37.noarch
perl-ph-5.36.0-492.fc38.ppc64le
perl-podlators-1:5.00-1.fc38.noarch
perl-sigtrap-1.10-492.fc38.noarch
perl-sort-2.05-492.fc38.noarch
perl-subs-1.04-492.fc38.noarch
perl-threads-1:2.27-489.fc38.ppc64le
perl-threads-shared-1.64-489.fc38.ppc64le
perl-utils-5.36.0-492.fc38.noarch
perl-vars-1.05-492.fc38.noarch
perl-version-8:0.99.29-490.fc38.ppc64le
perl-vmsish-1.04-492.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.ppc64le
python3-libs-3.11.1-1.fc38.ppc64le
python3-pyparsing-3.0.9-2.fc37.noarch
strace-6.1-1.fc38.ppc64le
sysprof-capture-devel-3.46.0-1.fc38.ppc64le
systemtap-sdt-devel-4.8~pre16650659g6a096a7d-1.fc38.ppc64le
zlib-devel-1.2.13-1.fc38.ppc64le
Complete!
Finish: build setup for wise2-2.4.1-16.fc38.src.rpm
Start: rpmbuild wise2-2.4.1-16.fc38.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1671753600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.pisiQc
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf wise2.4.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/wise2.4.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd wise2.4.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (wise2-build.patch):
+ echo 'Patch #0 (wise2-build.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/makefile
patching file src/welcome.csh
Patch #1 (wise2-isnumber.patch):
+ echo 'Patch #1 (wise2-isnumber.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/models/phasemodel.c
Patch #2 (wise2-glib2.patch):
+ echo 'Patch #2 (wise2-glib2.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/makefile
patching file src/snp/makefile
patching file src/corba/makefile
patching file src/models/makefile
patching file src/dnaindex/makefile
patching file src/dnaindex/assembly/makefile
patching file src/dynlibsrc/makefile
patching file src/network/makefile
patching file src/other_programs/makefile
patching file src/base/makefile
patching file src/HMMer2/Makefile
Patch #3 (wise2-getline.patch):
+ echo 'Patch #3 (wise2-getline.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/HMMer2/sqio.c
Patch #4 (wise2-ld--as-needed.patch):
+ echo 'Patch #4 (wise2-ld--as-needed.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/models/makefile
Patch #6 (wise2-c99.patch):
+ echo 'Patch #6 (wise2-c99.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file src/HMMer2/prior.c
patching file src/external/mott/mott_api.c
+ chmod a-x src/external/mott/mott_api.c
+ chmod a-x src/external/mott/mott_api.h
+ chmod a-x src/external/mott/gaplib.c
+ chmod a-x src/external/mott/gapstat.h
+ sed -i s#/usr/local/bin/perl#/usr/bin/perl# docs/gettex.pl
+ chmod -x test_data/rrm.HMM
+ for i in base dynlibsrc dyc
+ cp src/base/LICENSE LICENSE.base
+ for i in base dynlibsrc dyc
+ cp src/dynlibsrc/LICENSE LICENSE.dynlibsrc
+ for i in base dynlibsrc dyc
+ cp src/dyc/LICENSE LICENSE.dyc
+ cp src/models/GNULICENSE LICENSE.GPL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Ep3b9M
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd wise2.4.1
+ export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ make -C src CC=gcc 'CFLAGS= -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L' all
make: Entering directory '/builddir/build/BUILD/wise2.4.1/src'
(cd base ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" libwisebase.a )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/base'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wiseconfig.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wisestring.c
wisestring.dy: In function 'Wise2_breakstring_protect':
wisestring.dy:632:21: warning: variable 'c' set but not used [-Wunused-but-set-variable]
632 | auto char c;
| ^
wisestring.dy: In function 'Wise2_show_text':
wisestring.dy:771:23: warning: 'pushpoi' may be used uninitialized [-Wmaybe-uninitialized]
771 | line=pushpoi+1;
| ~~~~^~~~~~~~~~
wisestring.dy:741:9: note: 'pushpoi' was declared here
741 | char *pushpoi;
| ^~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wiseerror.c
wiseerror.dy: In function 'Wise2_show_message_stack':
wiseerror.dy:176:16: warning: unused variable 'count' [-Wunused-variable]
176 | register int count;
| ^~~~~
wiseerror.dy:175:16: warning: unused variable 'j' [-Wunused-variable]
175 | register int j;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wisememman.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wisefile.c
wisefile.dy: In function 'Wise2_myfclose':
wisefile.dy:72:18: warning: format '%d' expects argument of type 'int', but argument 3 has type 'FILE *' [-Wformat=]
72 | fprintf(stderr,"Closing %d\n",ofp);
| ^~~~~~~~~~~~~~ ~~~
| |
| FILE *
wisefile.dy: In function 'Wise2_append_file_to_path':
wisefile.dy:141:10: warning: variable 'runner' set but not used [-Wunused-but-set-variable]
141 | char * runner;
| ^~~~~~
wisefile.dy: In function 'Wise2_openfile':
wisefile.dy:212:3: warning: 'strncpy' specified bound 12 equals destination size [-Wstringop-truncation]
212 | strncpy(prot,passedprot,12);
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wiserandom.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wisetime.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wiseoverlay.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L wisestreaminterface.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L commandline.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L linesubs.c
ar ru libwisebase.a wiseconfig.o wisestring.o wiseerror.o wisememman.o wisefile.o wiserandom.o wisetime.o wiseoverlay.o wisestreaminterface.o commandline.o linesubs.o
ar: creating libwisebase.a
if test -x /bin/ranlib; then /bin/ranlib libwisebase.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libwisebase.a; else exit 0; fi
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/base'
(cd HMMer2 ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" libhmmer.a )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/HMMer2'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c alphabet.c
alphabet.c: In function 'DigitizeAlignment':
alphabet.c:237:9: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses]
237 | if (! ainfo->sqinfo[idx].flags & SQINFO_LEN) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
alphabet.c: In function 'P7CountSymbol':
alphabet.c:264:13: warning: array subscript has type 'char' [-Wchar-subscripts]
264 | counters[symidx] += wt;
| ^
alphabet.c: In function 'SetAlphabet':
alphabet.c:108:5: warning: 'strncpy' output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation]
108 | strncpy(Alphabet, "ACGTUNRYMKSWHBVDX", 17);
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c core_algorithms.c
core_algorithms.c: In function 'P7ViterbiTrace':
core_algorithms.c:513:20: warning: 'k' may be used uninitialized [-Wmaybe-uninitialized]
513 | sc = imx[i+1][k] - hmm->isc[(int) dsq[i+1]][k];
| ^
core_algorithms.c:420:7: note: 'k' was declared here
420 | int k; /* position in model (1..M) */
| ^
core_algorithms.c: In function 'P7ParsingViterbi':
core_algorithms.c:958:11: warning: 'cur' may be used uninitialized [-Wmaybe-uninitialized]
958 | sc = xmx[cur][XMC] + hmm->xsc[XTC][MOVE];
| ^
core_algorithms.c:846:10: note: 'cur' was declared here
846 | int cur, prv; /* indices for rolling dp matrix */
| ^~~
core_algorithms.c: In function 'P7WeeViterbi':
core_algorithms.c:1081:19: warning: 'k2' may be used uninitialized [-Wmaybe-uninitialized]
1081 | kassign[s2] = k2;
| ~~~~~~~~~~~~^~~~
core_algorithms.c:1432:16: note: 'k2' was declared here
1432 | int k2;
| ^~
core_algorithms.c:1082:19: warning: 't2' may be used uninitialized [-Wmaybe-uninitialized]
1082 | tassign[s2] = t2;
| ~~~~~~~~~~~~^~~~
core_algorithms.c:1433:16: note: 't2' was declared here
1433 | enum p7stype t2;
| ^~
core_algorithms.c:1240:10: warning: 'ret_sc' may be used uninitialized [-Wmaybe-uninitialized]
1240 | return ret_sc;
| ^~~~~~
core_algorithms.c:1047:16: note: 'ret_sc' was declared here
1047 | float ret_sc; /* optimal score over complete seq */
| ^~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c debug.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c emit.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c emulation.c
In file included from emulation.c:26:
version.h:21:14: warning: 'copyright' defined but not used [-Wunused-variable]
21 | static char *copyright = "\
| ^~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c histogram.c
histogram.c: In function 'PrintASCIIHistogram':
histogram.c:223:26: warning: 'lowbound' may be used uninitialized [-Wmaybe-uninitialized]
223 | for (num = 0; lowbound > h->lowscore; lowbound--)
| ~~~~~~~~~^~~~~~~~~~~~~
histogram.c:200:8: note: 'lowbound' was declared here
200 | int lowbound, lowcount; /* cutoffs on the low side */
| ^~~~~~~~
histogram.c: In function 'EVDMaxLikelyFit':
histogram.c:1249:13: warning: 'total' may be used uninitialized [-Wmaybe-uninitialized]
1249 | total += mult;
| ~~~~~~^~~~~~~
histogram.c:1171:10: note: 'total' was declared here
1171 | double total;
| ^~~~~
histogram.c: In function 'ExtremeValueFitHistogram':
histogram.c:659:42: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
659 | (mu - (log (-1. * log((double) (n+z-1) / (double)(n+z))) / lambda));
| ~^~
histogram.c:576:10: note: 'z' was declared here
576 | int z; /* number of censored samples */
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c hmmio.c
hmmio.c: In function 'read_asc19hmm':
hmmio.c:847:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
847 | if ((s = Getword(fp, sqdARG_INT)) == NULL) goto FAILURE; M = atoi(s); /* model length */
| ^~
hmmio.c:847:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
847 | if ((s = Getword(fp, sqdARG_INT)) == NULL) goto FAILURE; M = atoi(s); /* model length */
| ^
hmmio.c:849:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
849 | if ((s = Getword(fp, sqdARG_STRING)) == NULL) goto FAILURE; Plan7SetName(hmm, s); /* name */
| ^~
hmmio.c:849:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
849 | if ((s = Getword(fp, sqdARG_STRING)) == NULL) goto FAILURE; Plan7SetName(hmm, s); /* name */
| ^~~~~~~~~~~~
hmmio.c:850:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
850 | if ((s = Getword(fp, sqdARG_STRING)) == NULL) goto FAILURE; s2upper(s); /* alphabet type */
| ^~
hmmio.c:850:64: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
850 | if ((s = Getword(fp, sqdARG_STRING)) == NULL) goto FAILURE; s2upper(s); /* alphabet type */
| ^~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c mathsupport.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c masks.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c misc.c
In file included from misc.c:25:
version.h:21:14: warning: 'copyright' defined but not used [-Wunused-variable]
21 | static char *copyright = "\
| ^~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c modelmakers.c
modelmakers.c: In function 'P7Maxmodelmaker':
modelmakers.c:238:11: warning: variable 't_me' set but not used [-Wunused-but-set-variable]
238 | float t_me; /* estimate for an internal M->E transition */
| ^~~~
modelmakers.c: At top level:
modelmakers.c:850:1: warning: 'print_matassign' defined but not used [-Wunused-function]
850 | print_matassign(int *matassign, int alen)
| ^~~~~~~~~~~~~~~
In file included from structs.h:22,
from modelmakers.c:29:
modelmakers.c: In function 'P7Maxmodelmaker':
modelmakers.c:362:27: warning: 'j' may be used uninitialized [-Wmaybe-uninitialized]
362 | if (isgap(aseqs[idx][j-1]))
| ^
modelmakers.c:224:14: note: 'j' was declared here
224 | int i, j; /* positions in alignment */
| ^
modelmakers.c:378:14: warning: 'first' may be used uninitialized [-Wmaybe-uninitialized]
378 | matassign[i] &= ~ASSIGN_INSERT;
| ~~~~~~~~~^~~
modelmakers.c:235:11: note: 'first' was declared here
235 | int first, last; /* positions of first and last cols [1..alen] */
| ^~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c plan7.c
plan7.c: In function 'Plan7ESTConfig':
plan7.c:816:27: warning: 'tripnull' may be used uninitialized [-Wmaybe-uninitialized]
816 | hmm->dnam[x][k] = Prob2Score(p, tripnull[x]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
plan7.c:793:10: note: 'tripnull' was declared here
793 | float *tripnull; /* UNFINISHED!!! */
| ^~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c plan9.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c prior.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c tophits.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c trace.c
In file included from trace.c:26:
version.h:21:14: warning: 'copyright' defined but not used [-Wunused-variable]
21 | static char *copyright = "\
| ^~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c aligneval.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c alignio.c
alignio.c: In function 'ReadAlignedFASTA':
alignio.c:143:16: warning: 'aseq' may be used uninitialized [-Wmaybe-uninitialized]
143 | *ret_aseq = aseq;
| ~~~~~~~~~~~~~^~~~~~
alignio.c:109:11: note: 'aseq' was declared here
109 | char **aseq; /* aligned sequences */
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c cluster.c
cluster.c: In function 'Cluster':
cluster.c:210:31: warning: 'j' may be used uninitialized [-Wmaybe-uninitialized]
210 | tree[Np-2].right = coord[j];
| ^
cluster.c:152:17: note: 'j' was declared here
152 | int i, j; /* coords of minimum difference */
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c dayhoff.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c file.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c getopt.c
getopt.c: In function 'Getopt':
getopt.c:118:25: warning: 'opti' may be used uninitialized [-Wmaybe-uninitialized]
118 | *ret_optname = opt[opti].name;
| ^
getopt.c:62:7: note: 'opti' was declared here
62 | int opti;
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c gnuregex.c
gnuregex.c:35: warning: "_GNU_SOURCE" redefined
35 | #define _GNU_SOURCE
|
<command-line>: note: this is the location of the previous definition
gnuregex.c: In function 'regex_compile':
gnuregex.c:1613:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
1613 | if (COMPILE_STACK_EMPTY)
| ^
gnuregex.c:1633:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else]
1633 | if (COMPILE_STACK_EMPTY)
| ^
gnuregex.c: In function 're_match_2':
gnuregex.c:3752:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
3752 | if ((int) old_regend[r] >= (int) regstart[r])
| ^
gnuregex.c:3752:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
3752 | if ((int) old_regend[r] >= (int) regstart[r])
| ^
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2394:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:3758:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
3758 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2397:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2397 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:3758:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
3758 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2341:11: warning: unused variable 'destination' [-Wunused-variable]
2341 | char *destination; \
| ^~~~~~~~~~~
gnuregex.c:3758:19: note: in expansion of macro 'PUSH_FAILURE_POINT'
3758 | PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2394:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:3905:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3905 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2397:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2397 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:3905:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3905 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2341:11: warning: unused variable 'destination' [-Wunused-variable]
2341 | char *destination; \
| ^~~~~~~~~~~
gnuregex.c:3905:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3905 | PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2394:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:3958:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3958 | PUSH_FAILURE_POINT (p + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2397:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2397 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:3958:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3958 | PUSH_FAILURE_POINT (p + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2341:11: warning: unused variable 'destination' [-Wunused-variable]
2341 | char *destination; \
| ^~~~~~~~~~~
gnuregex.c:3958:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
3958 | PUSH_FAILURE_POINT (p + mcnt, d, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2482:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2482 | high_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
gnuregex.c:4064:13: note: in expansion of macro 'POP_FAILURE_POINT'
4064 | POP_FAILURE_POINT (sdummy, pdummy,
| ^~~~~~~~~~~~~~~~~
gnuregex.c:2485:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2485 | low_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
gnuregex.c:4064:13: note: in expansion of macro 'POP_FAILURE_POINT'
4064 | POP_FAILURE_POINT (sdummy, pdummy,
| ^~~~~~~~~~~~~~~~~
gnuregex.c:4061:19: warning: variable 'sdummy' set but not used [-Wunused-but-set-variable]
4061 | char *sdummy;
| ^~~~~~
gnuregex.c:4060:28: warning: variable 'pdummy' set but not used [-Wunused-but-set-variable]
4060 | unsigned char *pdummy;
| ^~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2394:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:4097:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4097 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2397:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2397 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:4097:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4097 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2341:11: warning: unused variable 'destination' [-Wunused-variable]
2341 | char *destination; \
| ^~~~~~~~~~~
gnuregex.c:4097:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4097 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2394:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2394 | PUSH_FAILURE_ITEM (lowest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:4110:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4110 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2315:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
2315 | fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
| ^
gnuregex.c:2397:5: note: in expansion of macro 'PUSH_FAILURE_ITEM'
2397 | PUSH_FAILURE_ITEM (highest_active_reg); \
| ^~~~~~~~~~~~~~~~~
gnuregex.c:4110:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4110 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2341:11: warning: unused variable 'destination' [-Wunused-variable]
2341 | char *destination; \
| ^~~~~~~~~~~
gnuregex.c:4110:11: note: in expansion of macro 'PUSH_FAILURE_POINT'
4110 | PUSH_FAILURE_POINT (0, 0, -2);
| ^~~~~~~~~~~~~~~~~~
gnuregex.c:2482:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2482 | high_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
gnuregex.c:4278:11: note: in expansion of macro 'POP_FAILURE_POINT'
4278 | POP_FAILURE_POINT (d, p,
| ^~~~~~~~~~~~~~~~~
gnuregex.c:2485:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
2485 | low_reg = (unsigned) POP_FAILURE_ITEM (); \
| ^
gnuregex.c:4278:11: note: in expansion of macro 'POP_FAILURE_POINT'
4278 | POP_FAILURE_POINT (d, p,
| ^~~~~~~~~~~~~~~~~
gnuregex.c: In function 'regex_compile':
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:947:34: warning: pointer may be used after 'realloc' [-Wuse-after-free]
947 | laststart = (laststart - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:949:42: warning: pointer may be used after 'realloc' [-Wuse-after-free]
949 | pending_exact = (pending_exact - old_buffer) + bufp->buffer; \
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:870:14: warning: pointer may be used after 'realloc' [-Wuse-after-free]
870 | while (b - bufp->buffer + (n) > bufp->allocated) \
| ~~^~~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:945:44: warning: pointer may be used after 'realloc' [-Wuse-after-free]
945 | fixup_alt_jump = (fixup_alt_jump - old_buffer) + bufp->buffer;\
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gnuregex.c:943:26: warning: pointer may be used after 'realloc' [-Wuse-after-free]
943 | begalt = (begalt - old_buffer) + bufp->buffer; \
| ~~~~~~~~^~~~~~~~~~~~~
gnuregex.c:936:38: note: call to 'realloc' here
936 | bufp->buffer = (unsigned char *) realloc (bufp->buffer, bufp->allocated);\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c interleaved.c
interleaved.c: In function 'ReadInterleaved':
interleaved.c:427:3: warning: 'blocks' may be used uninitialized [-Wmaybe-uninitialized]
427 | free(blocks);
| ^~~~~~~~~~~~
interleaved.c:283:6: note: 'blocks' was declared here
283 | } *blocks;
| ^~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c iupac.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c msf.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c revcomp.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c selex.c
selex.c: In function 'ReadSELEX':
selex.c:215:25: warning: 'num' may be used uninitialized [-Wmaybe-uninitialized]
215 | aseqs = (char **) MallocOrDie (num * sizeof(char *));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
selex.c:68:12: note: 'num' was declared here
68 | int num; /* number of seqs read */
| ^~~
selex.c:74:6: warning: 'blocks' may be used uninitialized [-Wmaybe-uninitialized]
74 | } *blocks;
| ^~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c sqerror.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c sqio.c
sqio.c: In function 'SeqfileFormat':
sqio.c:1033:11: warning: the comparison will always evaluate as 'false' for the address of 'sp' will never be NULL [-Waddress]
1033 | if (sp==NULL || *sp=='\0')
| ^~
sqio.c:1010:9: note: 'sp' declared here
1010 | char sp[LINEBUFLEN];
| ^~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c sre_ctype.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c sre_math.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c sre_string.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c stack.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c translate.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c types.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c weight.c
weight.c: In function 'GSCWeights':
weight.c:79:3: warning: 'rwt' may be used uninitialized [-Wmaybe-uninitialized]
79 | downweight(tree, ainfo->nseq, lwt, rwt, fwt, ainfo->nseq);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
weight.c:43:17: note: 'rwt' was declared here
43 | float *lwt, *rwt; /* weight on left, right of this tree node */
| ^~~
weight.c: In function 'VoronoiWeights':
weight.c:291:17: warning: 'best' may be used uninitialized [-Wmaybe-uninitialized]
291 | ainfo->wgt[best] += 1.0;
| ~~~~~~~~~~^~~~~~
weight.c:163:11: note: 'best' was declared here
163 | int best; /* index of nearest real sequence */
| ^~~~
ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o emit.o emulation.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o prior.o tophits.o trace.o aligneval.o alignio.o cluster.o dayhoff.o file.o getopt.o gnuregex.o interleaved.o iupac.o msf.o revcomp.o selex.o sqerror.o sqio.o sre_ctype.o sre_math.o sre_string.o stack.o translate.o types.o weight.o
a - alphabet.o
a - core_algorithms.o
a - debug.o
a - emit.o
a - emulation.o
a - histogram.o
a - hmmio.o
a - mathsupport.o
a - masks.o
a - misc.o
a - modelmakers.o
a - plan7.o
a - plan9.o
a - prior.o
a - tophits.o
a - trace.o
a - aligneval.o
a - alignio.o
a - cluster.o
a - dayhoff.o
a - file.o
a - getopt.o
a - gnuregex.o
a - interleaved.o
a - iupac.o
a - msf.o
a - revcomp.o
a - selex.o
a - sqerror.o
a - sqio.o
a - sre_ctype.o
a - sre_math.o
a - sre_string.o
a - stack.o
a - translate.o
a - types.o
a - weight.o
if test -x /bin/ranlib; then /bin/ranlib libhmmer.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libhmmer.a; else exit 0; fi
if test -x ranlib; then ranlib libhmmer.a; else exit 0; fi
chmod 644 libhmmer.a
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/HMMer2'
(cd dynlibsrc ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" libdyna.a )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/dynlibsrc'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ packaln.c
packaln.dy: In function 'Wise2_read_simple_PackAln':
packaln.dy:88:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
88 | fgets(buffer,MAXLINE,ifp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ aln.c
aln.dy: In function 'Wise2_swallow_AlnColumn_multiple':
aln.dy:580:16: warning: variable 'i' set but not used [-Wunused-but-set-variable]
580 | register int i;
| ^
aln.dy: In function 'Wise2_mapped_ascii_AlnBlock':
aln.dy:867:19: warning: too many arguments for format [-Wformat-extra-args]
867 | fprintf(ofp," {%3.2f} ",(double)(*score_to_double)(cuml),cuml);
| ^~~~~~~~~~~~
aln.dy: In function 'Wise2_read_dumped_ascii_AlnColumn_line':
aln.dy:918:11: warning: variable 'base' set but not used [-Wunused-but-set-variable]
918 | char ** base, **bstr;
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dnamatrix.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ probability.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ alnrange.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ alnconvert.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ basematrix.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ shattermatrix.c
shattermatrix.dy: In function 'Wise2_new_ShatterMatrixComponent':
shattermatrix.dy:124:7: warning: unused variable 'j' [-Wunused-variable]
124 | int j;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ matrixdebug.c
matrixdebug.dy: In function 'Wise2_show_PackAln_Debug':
matrixdebug.dy:67:7: warning: unused variable 'cum' [-Wunused-variable]
67 | int cum;
| ^~~
matrixdebug.dy:66:7: warning: unused variable 'j' [-Wunused-variable]
66 | int j,k;
| ^
matrixdebug.dy: In function 'Wise2_user_DebugMatrix':
matrixdebug.dy:208:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
208 | fgets(buffer,MAXLINE,in);
| ^~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dpenvelope.c
dpenvelope.dy: In function 'Wise2_read_DPEnvelope':
dpenvelope.dy:98:11: warning: variable 'base' set but not used [-Wunused-but-set-variable]
98 | char ** base;
| ^~~~
dpenvelope.dy: In function 'Wise2_overlap_DPUnit':
dpenvelope.dy:68:1: warning: control reaches end of non-void function [-Wreturn-type]
68 | }
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dbsearchimpl.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dprunimpl.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ complexsequence.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ complexevalset.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ complexconsensi.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ sequence.c
sequence.dy: In function 'Wise2_read_fasta_Sequence':
sequence.dy:767:11: warning: unused variable 'seen_weight' [-Wunused-variable]
767 | boolean seen_weight = 0;
| ^~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ sequencestream.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ seqalign.c
seqalign.dy: In function 'Wise2_read_selex_SeqAlign':
seqalign.dy:421:25: warning: 'pos' may be used uninitialized [-Wmaybe-uninitialized]
421 | for(seq = buffer+pos;*seq;seq++) {
| ~~~~~~^~~~
seqalign.dy:350:7: note: 'pos' was declared here
350 | int pos;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hitlist.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hsp.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hspstream.c
hspstream.dy: In function 'Wise2_typed_LinearHSPmanager_from_Stream':
hspstream.dy:109:7: warning: unused variable 'i' [-Wunused-variable]
109 | int i;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ codon.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ compmat.c
compmat.dy: In function 'Wise2_write_Blast_CompMat_alphabet.part.0':
compmat.dy:307:3: warning: 'minnumbers' may be used uninitialized [-Wmaybe-uninitialized]
307 | fprintf(ofp,"% d",minnumbers[0]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compmat.dy:268:7: note: 'minnumbers' declared here
268 | int minnumbers[26];
| ^~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ codonmatrix.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ codonmapper.c
codonmapper.dy: In function 'Wise2_new_CodonMapper':
codonmapper.dy:379:10: warning: variable 'total_freq' set but not used [-Wunused-but-set-variable]
379 | double total_freq;
| ^~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ sequencedb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hscore.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ seqlookup.c
seqlookup.dy: In function 'Wise2_load_SequenceDB_SeqLookupLoadPara':
seqlookup.dy:143:7: warning: variable 'base' set but not used [-Wunused-but-set-variable]
143 | int base[5];
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ arrayseqlookup.c
arrayseqlookup.dy: In function 'Wise2_add_ArraySeqHead':
arrayseqlookup.dy:294:24: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
294 | ArraySeqLookupUnit * temp;
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ genericindexresult.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ linkedlist_lookpos.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ singlenumberspace.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ histogram.c
histogram.dy: In function 'Wise2_PrintASCIIHistogram':
histogram.dy:299:26: warning: 'lowbound' may be used uninitialized [-Wmaybe-uninitialized]
299 | for (num = 0; lowbound > h->lowscore; lowbound--)
| ~~~~~~~~~^~~~~~~~~~~~~
histogram.dy:276:8: note: 'lowbound' was declared here
276 | int lowbound, lowcount; /* cutoffs on the low side */
| ^~~~~~~~
histogram.dy: In function 'Wise2_EVDMaxLikelyFit':
histogram.dy:1323:13: warning: 'total' may be used uninitialized [-Wmaybe-uninitialized]
1323 | total += mult;
| ~~~~~~^~~~~~~
histogram.dy:1245:10: note: 'total' was declared here
1245 | double total;
| ^~~~~
histogram.dy: In function 'Wise2_ExtremeValueFitHistogram':
histogram.dy:647:42: warning: 'z' may be used uninitialized [-Wmaybe-uninitialized]
647 | (mu - (log (-1. * log((double) (n+z-1) / (double)(n+z))) / lambda));
| ~^~
histogram.dy:545:10: note: 'z' was declared here
545 | int z; /* number of censored samples */
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ searchstatinterface.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ searchstatlookup.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ proteindb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ protein.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ pairbase.c
pairbase.dy: In function 'Wise2_diagonal_tweak_PairBaseCodonModel':
pairbase.dy:48:7: warning: unused variable 'codon_b' [-Wunused-variable]
48 | int codon_b;
| ^~~~~~~
pairbase.dy:47:7: warning: unused variable 'codon_a' [-Wunused-variable]
47 | int codon_a;
| ^~~~~~~
pairbase.dy: In function 'Wise2_flatten_diagonal_PairBaseCodonModel':
pairbase.dy:106:25: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized]
106 | m->codon[p] = 0.0;
| ~~~~~~~~~~~~^~~~~
pairbase.dy:96:7: note: 'p' was declared here
96 | int p;
| ^
pairbase.dy: In function 'Wise2_flatten_diagonal_PairBaseCodonModelScore':
pairbase.dy:148:25: warning: 'p' may be used uninitialized [-Wmaybe-uninitialized]
148 | m->codon[p] = NEGI;
pairbase.dy:138:7: note: 'p' was declared here
138 | int p;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ pairbaseseq.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ genomicdb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ randommodel.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ randomdb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ genomic.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ cdna.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ cdnadb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dna.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ embl.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ genomicregion.c
genomicregion.dy: In function 'Wise2_read_EMBL_FT_into_GenomicRegion':
genomicregion.dy:756:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
756 | fgets(buffer,maxlen,ifp);
| ^~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ gene.c
gene.dy: In function 'Wise2_write_Embl_FT_Gene':
gene.dy:404:11: warning: 'tr' may be used uninitialized [-Wmaybe-uninitialized]
404 | if( tr->ex_len > 1 ) {
| ~~^~~~~~~~
gene.dy:364:16: note: 'tr' was declared here
364 | Transcript * tr;
| ^~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ transcript.c
transcript.dy: In function 'Wise2_show_Transcript':
transcript.dy:170:23: warning: unused variable 'sf' [-Wunused-variable]
170 | SupportingFeature * sf;
| ^~
transcript.dy:169:7: warning: unused variable 'k' [-Wunused-variable]
169 | int k;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ translation.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ btcanvas.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ asciibtcanvas.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dynlibcross.c
ar ru libdyna.a packaln.o aln.o dnamatrix.o probability.o alnrange.o alnconvert.o basematrix.o shattermatrix.o matrixdebug.o dpenvelope.o dbsearchimpl.o dprunimpl.o complexsequence.o complexevalset.o complexconsensi.o sequence.o sequencestream.o seqalign.o hitlist.o hsp.o hspstream.o codon.o compmat.o codonmatrix.o codonmapper.o sequencedb.o hscore.o seqlookup.o arrayseqlookup.o genericindexresult.o linkedlist_lookpos.o singlenumberspace.o histogram.o searchstatinterface.o searchstatlookup.o proteindb.o protein.o pairbase.o pairbaseseq.o genomicdb.o randommodel.o randomdb.o genomic.o cdna.o cdnadb.o dna.o embl.o genomicregion.o gene.o transcript.o translation.o btcanvas.o asciibtcanvas.o dynlibcross.o
ar: creating libdyna.a
if test -x /bin/ranlib; then /bin/ranlib libdyna.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libdyna.a; else exit 0; fi
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/dynlibsrc'
(cd dynlibsrc ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" libdyna_glib.a )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/dynlibsrc'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ subseqhash.c
subseqhash.dy: In function 'Wise2_is_populated_subseqhash_ghash':
subseqhash.dy:111:29: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
111 | if( g_hash_table_lookup(h,(gconstpointer)seq_number) == NULL ) {
| ^
subseqhash.dy: In function 'Wise2_lookup_subseqhash_ghash':
subseqhash.dy:128:85: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
128 | return new_linkedl_SeqLookupResultInterface((SeqLookupPos *)g_hash_table_lookup(h,(gconstpointer)seq_number));
| ^
subseqhash.dy: In function 'Wise2_add_seq_subseqhash_ghash':
subseqhash.dy:160:54: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
160 | if((ret = (SeqLookupPos *) g_hash_table_lookup(h,(gconstpointer)seq_number)) == NULL ) {
| ^
subseqhash.dy:161:29: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
161 | g_hash_table_insert(h,(gpointer)seq_number,p);
| ^
subseqhash.dy: In function 'Wise2_add_direct_number_subseqhash_ghash':
subseqhash.dy:188:52: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
188 | if((ret = (SeqLookupPos *) g_hash_table_lookup(h,(gconstpointer)seq_number)) == NULL ) {
| ^
subseqhash.dy:189:27: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
189 | g_hash_table_insert(h,(gpointer)seq_number,p);
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ intallocator.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ proteinstreamedindex.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ shadowseq.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ shadowseqindex.c
shadowseqindex.dy: In function 'Wise2_dump_stats_ShadowSequenceIndex':
shadowseqindex.dy:285:15: warning: format '%f' expects argument of type 'double', but argument 4 has type 'long unsigned int' [-Wformat=]
285 | fprintf(ofp,"Head memory %d [%.2f Mbytes]\n",total_head,(total_head*sizeof(ShadowArraySeqHead))/100000);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long unsigned int
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hsphandler.c
hsphandler.dy: In function 'Wise2_truncated_LinearHSPmanager':
hsphandler.dy:278:13: warning: variable 'worst' set but not used [-Wunused-but-set-variable]
278 | HSPset ** worst;
| ^~~~~
hsphandler.dy: In function 'Wise2_new_consistent_HSPset':
hsphandler.dy:342:7: warning: variable 'eaten' set but not used [-Wunused-but-set-variable]
342 | int eaten;
| ^~~~~
hsphandler.dy: In function 'Wise2_new_LinearHSPmanager_simple_heuristic':
hsphandler.dy:387:7: warning: unused variable 'j' [-Wunused-variable]
387 | int j;
| ^
hsphandler.dy:386:7: warning: unused variable 'i' [-Wunused-variable]
386 | int i;
| ^
hsphandler.dy: In function 'Wise2_new_HSP_QuerySeqHSP':
hsphandler.dy:786:15: warning: variable 'pause_j' set but not used [-Wunused-but-set-variable]
786 | int pause_i,pause_j;
| ^~~~~~~
hsphandler.dy:786:7: warning: variable 'pause_i' set but not used [-Wunused-but-set-variable]
786 | int pause_i,pause_j;
| ^~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hspscaninterface.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hsp2hitscan.c
hsp2hitscan.dy: In function 'Wise2_one_off_two_hit_HSPscan_query_direct':
hsp2hitscan.dy:209:18: warning: format '%d' expects argument of type 'int', but argument 3 has type '__time_t' {aka 'long int'} [-Wformat=]
209 | fprintf(stderr,"START %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
210 | use.ru_utime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:209:18: warning: format '%d' expects argument of type 'int', but argument 4 has type '__time_t' {aka 'long int'} [-Wformat=]
209 | fprintf(stderr,"START %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
210 | use.ru_utime.tv_sec,
211 | use.ru_utime.tv_sec/1000,
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:209:18: warning: format '%d' expects argument of type 'int', but argument 5 has type '__time_t' {aka 'long int'} [-Wformat=]
209 | fprintf(stderr,"START %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
212 | use.ru_stime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:209:18: warning: format '%d' expects argument of type 'int', but argument 6 has type '__time_t' {aka 'long int'} [-Wformat=]
209 | fprintf(stderr,"START %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
213 | use.ru_stime.tv_sec/1000
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:273:18: warning: format '%d' expects argument of type 'int', but argument 3 has type '__time_t' {aka 'long int'} [-Wformat=]
273 | fprintf(stderr,"END OF SEED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
274 | use.ru_utime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:273:18: warning: format '%d' expects argument of type 'int', but argument 4 has type '__time_t' {aka 'long int'} [-Wformat=]
273 | fprintf(stderr,"END OF SEED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
274 | use.ru_utime.tv_sec,
275 | use.ru_utime.tv_sec/1000,
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:273:18: warning: format '%d' expects argument of type 'int', but argument 5 has type '__time_t' {aka 'long int'} [-Wformat=]
273 | fprintf(stderr,"END OF SEED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
276 | use.ru_stime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:273:18: warning: format '%d' expects argument of type 'int', but argument 6 has type '__time_t' {aka 'long int'} [-Wformat=]
273 | fprintf(stderr,"END OF SEED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
277 | use.ru_stime.tv_sec/1000
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:286:18: warning: format '%d' expects argument of type 'int', but argument 3 has type '__time_t' {aka 'long int'} [-Wformat=]
286 | fprintf(stderr,"POPULATION %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
287 | use.ru_utime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:286:18: warning: format '%d' expects argument of type 'int', but argument 4 has type '__time_t' {aka 'long int'} [-Wformat=]
286 | fprintf(stderr,"POPULATION %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
287 | use.ru_utime.tv_sec,
288 | use.ru_utime.tv_sec/1000,
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:286:18: warning: format '%d' expects argument of type 'int', but argument 5 has type '__time_t' {aka 'long int'} [-Wformat=]
286 | fprintf(stderr,"POPULATION %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
289 | use.ru_stime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:286:18: warning: format '%d' expects argument of type 'int', but argument 6 has type '__time_t' {aka 'long int'} [-Wformat=]
286 | fprintf(stderr,"POPULATION %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
290 | use.ru_stime.tv_sec/1000
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:302:18: warning: format '%d' expects argument of type 'int', but argument 3 has type '__time_t' {aka 'long int'} [-Wformat=]
302 | fprintf(stdout,"LINEARISED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
303 | use.ru_utime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:302:18: warning: format '%d' expects argument of type 'int', but argument 4 has type '__time_t' {aka 'long int'} [-Wformat=]
302 | fprintf(stdout,"LINEARISED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
303 | use.ru_utime.tv_sec,
304 | use.ru_utime.tv_sec/1000,
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:302:18: warning: format '%d' expects argument of type 'int', but argument 5 has type '__time_t' {aka 'long int'} [-Wformat=]
302 | fprintf(stdout,"LINEARISED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
305 | use.ru_stime.tv_sec,
| ~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:302:18: warning: format '%d' expects argument of type 'int', but argument 6 has type '__time_t' {aka 'long int'} [-Wformat=]
302 | fprintf(stdout,"LINEARISED %d.%03du %d.%03ds \n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
306 | use.ru_stime.tv_sec/1000
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| __time_t {aka long int}
hsp2hitscan.dy:192:9: warning: unused variable 'k' [-Wunused-variable]
192 | int i,k,j;
| ^
hsp2hitscan.dy:185:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
185 | int score;
| ^~~~~
hsp2hitscan.dy:183:7: warning: variable 'no' set but not used [-Wunused-but-set-variable]
183 | int no;
| ^~
hsp2hitscan.dy:182:18: warning: unused variable 'head' [-Wunused-variable]
182 | ArraySeqHead * head;
| ^~~~
hsp2hitscan.dy:181:7: warning: unused variable 'start_base' [-Wunused-variable]
181 | int start_base;
| ^~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hsplookupscan.c
hsplookupscan.dy: In function 'Wise2_one_off_HSPscan_scan_query_direct':
hsplookupscan.dy:144:8: warning: variable 'newseq' set but not used [-Wunused-but-set-variable]
144 | char newseq[5];
| ^~~~~~
hsplookupscan.dy:143:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
143 | int score;
| ^~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hsplookupthreaded.c
hsplookupthreaded.dy: In function 'Wise2_one_off_ordered_HSPscan_scan_query_direct':
hsplookupthreaded.dy:263:18: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=]
263 | fprintf(stderr,"retrieved array with %d elements\n",current_oph);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~
| |
| long int
hsplookupthreaded.dy:136:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
136 | int score;
| ^~~~~
hsplookupthreaded.dy:116:22: warning: unused variable 'hsp_para' [-Wunused-variable]
116 | LineariseHSPPara * hsp_para;
| ^~~~~~~~
hsplookupthreaded.dy: In function 'Wise2_hsp_thread_worker':
hsplookupthreaded.dy:659:27: warning: variable 'asl' set but not used [-Wunused-but-set-variable]
659 | auto ArraySeqLookup * asl;
| ^~~
hsplookupthreaded.dy:627:8: warning: variable 'newseq' set but not used [-Wunused-but-set-variable]
627 | char newseq[5];
| ^~~~~~
hsplookupthreaded.dy:621:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
621 | int score;
| ^~~~~
hsplookupthreaded.dy: In function 'Wise2_merge_HSPmanager':
hsplookupthreaded.dy:567:1: warning: control reaches end of non-void function [-Wreturn-type]
567 | }
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hspthreadeddb.c
hspthreadeddb.dy: In function 'Wise2_threadeddb_scan_worker':
hspthreadeddb.dy:154:77: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
154 | fprintf(stderr,"For segment %d, finished query with %d (%d) linear\n",seg,(int)seg->lm,seg->lm->len);
| ^
hspthreadeddb.dy:154:18: warning: format '%d' expects argument of type 'int', but argument 3 has type 'Wise2_HSPDatabaseSegment *' [-Wformat=]
154 | fprintf(stderr,"For segment %d, finished query with %d (%d) linear\n",seg,(int)seg->lm,seg->lm->len);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
| |
| Wise2_HSPDatabaseSegment *
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hspscanruntime.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ hsptwohitscan.c
hsptwohitscan.dy: In function 'Wise2_twohit_one_off_HSPscan_scan_query_direct':
hsptwohitscan.dy:113:7: warning: variable 'has_seen' set but not used [-Wunused-but-set-variable]
113 | int has_seen;
| ^~~~~~~~
hsptwohitscan.dy:105:8: warning: variable 'newseq' set but not used [-Wunused-but-set-variable]
105 | char newseq[5];
| ^~~~~~
hsptwohitscan.dy:104:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
104 | int score;
| ^~~~~
hsptwohitscan.dy: In function 'Wise2_add_to_TwoHitBuffer':
hsptwohitscan.dy:354:7: warning: unused variable 'j' [-Wunused-variable]
354 | int j;
| ^
hsptwohitscan.dy:353:7: warning: unused variable 'i' [-Wunused-variable]
353 | int i;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ proteinindexcons.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ dnaindexcons.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ staticseq.c
ar ru libdyna_glib.a subseqhash.o intallocator.o proteinstreamedindex.o shadowseq.o shadowseqindex.o hsphandler.o hspscaninterface.o hsp2hitscan.o hsplookupscan.o hsplookupthreaded.o hspthreadeddb.o hspscanruntime.o hsptwohitscan.o proteinindexcons.o dnaindexcons.o staticseq.o
ar: creating libdyna_glib.a
if test -x /bin/ranlib; then /bin/ranlib libdyna_glib.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libdyna_glib.a; else exit 0; fi
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/dynlibsrc'
(cd external ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" all )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/external'
(cd mott; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" all)
make[2]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/external/mott'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c -o mott_api.o mott_api.c
mott_api.c: In function 'KarlinAltschulStatistics2':
mott_api.c:152:9: warning: unused variable 'n' [-Wunused-variable]
152 | int n;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -c -o gaplib.o gaplib.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../../dynlibsrc -I../../base wise2_mott_bridge.c
ar ru libmott.a mott_api.o gaplib.o wise2_mott_bridge.o
ar: creating libmott.a
if test -x /bin/ranlib; then /bin/ranlib libmott.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libmott.a; else exit 0; fi
make[2]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/external/mott'
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/external'
(cd socket ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" libwisesocket.a )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/socket'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ functionserver.c
functionserver.dy: In function 'Wise2_main_loop_forking_FunctionServer':
functionserver.dy:55:10: warning: unused variable 'ofp' [-Wunused-variable]
55 | FILE * ofp;
| ^~~
functionserver.dy: In function 'Wise2_new_FunctionServer':
functionserver.dy:216:21: warning: unused variable 'name' [-Wunused-variable]
216 | struct sockaddr * name;
| ^~~~
functionserver.dy: In function 'Wise2_main_loop_forking_FunctionServer':
functionserver.dy:129:11: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
129 | write(new_socket,buf,9);
| ^~~~~~~~~~~~~~~~~~~~~~~
functionserver.dy:141:9: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
141 | write(new_socket,buf,6);
| ^~~~~~~~~~~~~~~~~~~~~~~
functionserver.dy:183:9: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
183 | write(new_socket,buf,5);
| ^~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ functionclient.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ anonobj.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ transferinterface.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ directsocketwrite.c
ar ru libwisesocket.a functionserver.o functionclient.o anonobj.o transferinterface.o directsocketwrite.o
ar: creating libwisesocket.a
if test -x /bin/ranlib; then /bin/ranlib libwisesocket.a; else exit 0; fi
if test -x /usr/bin/ranlib; then /usr/bin/ranlib libwisesocket.a; else exit 0; fi
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/socket'
(cd dnaindex ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" all )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/dnaindex'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_assembly.c
kmer_assembly.dy: In function 'Wise2_show_KmerAssemblyNode':
kmer_assembly.dy:296:15: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
296 | fprintf(ofp,"Node %ld of sequence %s \n",node->number,buffer);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly.dy:302:17: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
302 | fprintf(ofp," ... prev ... %c, %d to %ld\n",node->prev[i]->base,node->prev[i]->sequence_label_len,node->prev[i]->prev->number);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly.dy:309:17: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
309 | fprintf(ofp," ... next ... %c, %d to %ld\n",node->next[i]->base,node->next[i]->sequence_label_len,node->next[i]->next->number);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly.dy: In function 'Wise2_remove_sequence_label_KmerAssemblyLink':
kmer_assembly.dy:365:18: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'KmerAssemblyLink *' [-Wformat=]
365 | fprintf(stderr," ...unable to remove label %ld from link %ld (%d labels)\n",label,kal,kal->sequence_label_len);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~
| |
| KmerAssemblyLink *
kmer_assembly.dy:367:20: warning: format '%d' expects a matching 'int' argument [-Wformat=]
367 | fprintf(stderr," [%ld] is %d label\n",kal->sequence_label[i]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_index_interface.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_direct.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_hash.c
kmer_hash.dy: In function 'Wise2_insert_by_kmer_KmerHashIndex':
kmer_hash.dy:252:7: warning: unused variable 'i' [-Wunused-variable]
252 | int i;
| ^
kmer_hash.dy: In function 'Wise2_free_KmerHashIndex':
kmer_hash.dy:318:19: warning: format '%lx' expects argument of type 'long unsigned int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
318 | fprintf(stderr, "min_kmer: %016lx\n", khi->min_kmer);
| ^~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_hash.dy:319:19: warning: format '%lx' expects argument of type 'long unsigned int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
319 | fprintf(stderr, "max_kmer: %016lx\n", khi->max_kmer);
| ^~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_count.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_glib_index.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models singleseqspace.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models dnamapping.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models largeseqreader.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_assembly_untangler.c
kmer_assembly_untangler.dy: In function 'Wise2_show_KmerAssemblyPath':
kmer_assembly_untangler.dy:52:65: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
52 | fprintf(ofp,"%3d memory %d, from [%s] to [%s], base %c\n",i,(int)kap->stack[i],back,forw,kap->stack[i]->base);
| ^
kmer_assembly_untangler.dy: In function 'Wise2_untangle_KmerAssembly':
kmer_assembly_untangler.dy:120:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
120 | fprintf(stderr,"TANGLE: Node %ld, %s has forward %d and back %d links\n",node->number,buffer,node->next_len,node->prev_len);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:141:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
141 | fprintf(stderr,"Will attempt untangle starting at %ld to %ld\n",node->prev[i]->prev->number,node->number);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:141:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
141 | fprintf(stderr,"Will attempt untangle starting at %ld to %ld\n",node->prev[i]->prev->number,node->number);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:157:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
157 | fprintf(stderr,"RESOLVED: Node %ld [%s] Fully untangled now...\n",node->number,buffer);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:159:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
159 | fprintf(stderr,"UNRESOLVED: Node %ld [%s] still tangled...\n",node->number,buffer);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:101:22: warning: variable 'link_set' set but not used [-Wunused-but-set-variable]
101 | KmerAssemblyLink * link_set[1024];
| ^~~~~~~~
kmer_assembly_untangler.dy: In function 'Wise2_old_attempt_forward_untangle_KmerAssembly':
kmer_assembly_untangler.dy:444:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
444 | fprintf(stderr,"looking at node %ld with path length %d, next length %d depth %d\n",current->next->number,pathlen,current->next->next_len,current->sequence_label_len);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:568:82: warning: passing argument 4 of 'Wise2_lift_backward_tangled_tail' from incompatible pointer type [-Wincompatible-pointer-types]
568 | lift_backward_tangled_tail(kai,newpath->stack[newpath->stack_len-1],path,transferred_label,transferred_pos,transferred_len);
| ^~~~~~~~~~~~~~~~~
| |
| long int *
In file included from kmer_assembly_untangler.c:4:
kmer_assembly_untangler.h:174:116: note: expected 'int *' but argument is of type 'long int *'
174 | void Wise2_lift_backward_tangled_tail(KmerAssemblyIndex * kai,KmerAssemblyLink * new,KmerAssemblyPath * tail,int * start_label,SinglePosSequence ** positions,int label_len);
| ~~~~~~^~~~~~~~~~~
kmer_assembly_untangler.dy: In function 'Wise2_lift_forward_tangled_KmerAssemblyPath':
kmer_assembly_untangler.dy:746:20: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
746 | fprintf(stderr,"Moving stack position %d, depth %d, transfer %d, between %ld [%s] and %ld [%s]\n",i,kap->stack[i]->sequence_label_len,label_len,kap->stack[i]->prev->number,back,kap->stack[i]->next->number,forw);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy:746:20: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
746 | fprintf(stderr,"Moving stack position %d, depth %d, transfer %d, between %ld [%s] and %ld [%s]\n",i,kap->stack[i]->sequence_label_len,label_len,kap->stack[i]->prev->number,back,kap->stack[i]->next->number,forw);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_untangler.dy: In function 'Wise2_attempt_forward_untangle_KmerAssembly':
kmer_assembly_untangler.h:102:31: warning: 'newpath' may be used uninitialized [-Wmaybe-uninitialized]
102 | #define free_KmerAssemblyPath Wise2_free_KmerAssemblyPath
kmer_assembly_untangler.dy:363:22: note: 'newpath' was declared here
363 | KmerAssemblyPath * newpath;
| ^~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_assembly_contig.c
kmer_assembly_contig.dy: In function 'Wise2_KmerAssemblyContigSet_from_KmerAssemblyIndex':
kmer_assembly_contig.dy:66:27: warning: unused variable 'final' [-Wunused-variable]
66 | KmerAssemblyContigSet * final;
| ^~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models kmer_assembly_error.c
kmer_assembly_error.dy: In function 'Wise2_mark_tangles_KmerAssembly':
kmer_assembly_error.dy:93:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
93 | fprintf(stderr,"Marking node (%ld) [%s] as next tangled\n",node->number,buffer);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_error.dy:105:22: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'kmer_t' {aka 'long long int'} [-Wformat=]
105 | fprintf(stderr,"Marking node (%ld) [%s] as prev tangled\n",node->number,buffer);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| kmer_t {aka long long int}
kmer_assembly_error.dy: In function 'Wise2_attempt_resolve_forward_error_KmerAssembly':
kmer_assembly_error.dy:208:8: warning: unused variable 'next' [-Wunused-variable]
208 | char next[256];
| ^~~~
kmer_assembly_error.dy: In function 'Wise2_extend_indel_path_KmerAssembly':
kmer_assembly_error.dy:351:24: warning: format '%d' expects argument of type 'int', but argument 4 has type 'int *' [-Wformat=]
351 | fprintf(stderr,"in considering indel (%d, path %d), real (%c) and error (%c) do not agree at position %d,%d\n",delete_length,current_path,real->base,error->base,real_pos,error_pos);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~
| |
| int *
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models assembly.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models assembly_stream_interface.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models assembly_stream_fasta.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models assembly_sanger_project.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models assembly_stream_cons.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -I../models compressed_protein_index.c
compressed_protein_index.dy: In function 'Wise2_add_direct_number_CompressedProteinIndex':
compressed_protein_index.dy:223:10: warning: returning 'void *' from a function with return type 'boolean' {aka 'int'} makes integer from pointer without a cast [-Wint-conversion]
223 | return NULL;
| ^~~~
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/dnaindex'
(cd network ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" all )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/network'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../socket -I../dynlibsrc -I../dnaindex wise_proteinindex_server.c
wise_proteinindex_server.c: In function 'main':
wise_proteinindex_server.c:93:10: warning: unused variable 'temp' [-Wunused-variable]
93 | char * temp;
| ^~~~
wise_proteinindex_server.c:91:10: warning: unused variable 'ior_file' [-Wunused-variable]
91 | char * ior_file;
| ^~~~~~~~
wise_proteinindex_server.c:84:7: warning: unused variable 'count' [-Wunused-variable]
84 | int count = 0;
| ^~~~~
wise_proteinindex_server.c:76:7: warning: unused variable 'ret' [-Wunused-variable]
76 | int ret;
| ^~~
wise_proteinindex_server.c:75:14: warning: unused variable 'seq' [-Wunused-variable]
75 | Sequence * seq;
| ^~~
wise_proteinindex_server.c:70:7: warning: unused variable 'i' [-Wunused-variable]
70 | int i;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../socket -I../dynlibsrc -I../dnaindex net_hspscan.c
gcc -g -o scanwise_server wise_proteinindex_server.o net_hspscan.o ../dnaindex/compressed_protein_index.o ../dnaindex/kmer_index_interface.o ../dnaindex/singleseqspace.o ../dnaindex/kmer_direct.o -ldyna_glib -ldyna -lwisesocket -lwisebase -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -g -L../base/ -L../socket -L../dynlibsrc -L../dnaindex -lm `pkg-config --libs glib-2.0` -lpthread
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../socket -I../dynlibsrc -I../dnaindex client_multihspscan.c
client_multihspscan.dy: In function 'Wise2_new_multiclient_HSPScanInterface':
client_multihspscan.dy:128:1: warning: control reaches end of non-void function [-Wreturn-type]
128 | }
| ^
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/network'
(cd models ; make CC="gcc" CFLAGS="-c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L" EXTRALIBS="-lm" HMMER_DEFINE="HMMER_INTERNAL" HMMER_INCLUDE="../HMMer2/" HMMER_LIBS="../HMMer2/" all )
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src/models'
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ dnal.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ dnaalign.c
dnaalign.c: In function 'Wise2_calculate_shatter_DnaAlign':
dnaalign.c:336:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
336 | int j;
| ^~
dnaalign.c:335:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
335 | int i;
| ^~
dnaalign.c:333:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
333 | boolean calculate_shatter_DnaAlign(DnaAlign * mat,DPEnvelope * dpenv)
| ^~~~
dnaalign.c: In function 'Wise2_serial_search_DnaAlign':
dnaalign.c:621:9: warning: unused variable 'db_status' [-Wunused-variable]
621 | *
| ^
dnaalign.c: In function 'Wise2_PackAln_bestmemory_DnaAlign':
dnaalign.c:900:19: warning: unused variable 'de' [-Wunused-variable]
900 | */
| ^
dnaalign.c: In function 'Wise2_max_special_strip_DnaAlign':
dnaalign.c:1799:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1799 | * Return [UNKN ] Undocumented return value [int]
| ^~~~~~
dnaalign.c:1798:9: warning: unused variable 'temp' [-Wunused-variable]
1798 | *
| ^
dnaalign.c: In function 'Wise2_PackAln_bestmemory_DnaAlign':
dnaalign.c:961:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
961 | }
| ^
dnaalign.c:899:15: note: 'out' was declared here
899 | *
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ seqaligndisplay.c
gcc -o dnal dnal.o dnaalign.o seqaligndisplay.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ psw.c
In file included from /usr/include/stdio.h:906,
from ../base/wisebase.h:6,
from ../dynlibsrc/packaln.h:7,
from ../dynlibsrc/dyna.h:12,
from proteinsw.h:6,
from sw_wrap.h:6,
from psw.c:8:
In function '*__fprintfieee128',
inlined from 'main' at psw.c:241:5:
/usr/include/bits/stdio2.h:79:10: warning: 'qend' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
psw.c: In function 'main':
psw.c:60:7: note: 'qend' was declared here
60 | int qend;
| ^~~~
In function '*__fprintfieee128',
inlined from 'main' at psw.c:241:5:
/usr/include/bits/stdio2.h:79:10: warning: 'tend' may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
psw.c: In function 'main':
psw.c:62:7: note: 'tend' was declared here
62 | int tend;
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ proteinsw.c
proteinsw.c: In function 'Wise2_calculate_shatter_ProteinSW':
proteinsw.c:124:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
124 | int lenj;
| ^~~
proteinsw.c:123:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
123 | int leni;
| ^~~
proteinsw.c:121:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
121 | int k;
| ^~
proteinsw.c: In function 'Wise2_PackAln_bestmemory_ProteinSW':
proteinsw.c:824:19: warning: unused variable 'de' [-Wunused-variable]
824 | ProteinSW * mat;
| ^~
proteinsw.c: In function 'Wise2_max_special_strip_ProteinSW':
proteinsw.c:1678:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1678 | {
| ^
proteinsw.c:1677:9: warning: unused variable 'temp' [-Wunused-variable]
1677 | int max_special_strip_ProteinSW(ProteinSW * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
proteinsw.c: In function 'Wise2_PackAln_bestmemory_ProteinSW':
proteinsw.c:885:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
885 |
| ^
proteinsw.c:823:15: note: 'out' was declared here
823 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ sw_wrap.c
sw_wrap.dy: In function 'Wise2_Hscore_from_ProteinSW':
sw_wrap.dy:355:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
355 | Search_Return_Type ret;
| ^~~
sw_wrap.dy: In function 'Wise2_Hscore_from_ProteinABC':
sw_wrap.dy:407:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
407 | Search_Return_Type ret;
| ^~~
sw_wrap.dy: In function 'Wise2_Hscore_from_ProteinBA':
sw_wrap.dy:460:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
460 | Search_Return_Type ret;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ abc.c
abc.c: In function 'Wise2_calculate_shatter_abc':
abc.c:123:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
123 | int lenj;
| ^~~
abc.c:122:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
122 | int leni;
| ^~~
abc.c:120:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
120 | int k;
| ^~
abc.c: In function 'Wise2_PackAln_bestmemory_abc':
abc.c:822:19: warning: unused variable 'de' [-Wunused-variable]
822 | abc * mat;
| ^
abc.c: In function 'Wise2_max_special_strip_abc':
abc.c:1687:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1687 | {
| ^
abc.c:1686:9: warning: unused variable 'temp' [-Wunused-variable]
1686 | int max_special_strip_abc(abc * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
abc.c: In function 'Wise2_PackAln_bestmemory_abc':
abc.c:883:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
883 |
| ^
abc.c:821:15: note: 'out' was declared here
821 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pba.c
pba.c: In function 'Wise2_calculate_shatter_ProteinBlockAligner':
pba.c:126:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
126 | int lenj;
| ^~~
pba.c:125:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
125 | int leni;
| ^~~
pba.c:123:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
123 | int k;
| ^~
pba.c: In function 'Wise2_PackAln_bestmemory_ProteinBlockAligner':
pba.c:929:19: warning: unused variable 'de' [-Wunused-variable]
929 | ProteinBlockAligner * mat;
| ^~
pba.c: In function 'Wise2_max_special_strip_ProteinBlockAligner':
pba.c:1884:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1884 | {
| ^
pba.c:1883:9: warning: unused variable 'temp' [-Wunused-variable]
1883 | int max_special_strip_ProteinBlockAligner(ProteinBlockAligner * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
pba.c: In function 'Wise2_PackAln_bestmemory_ProteinBlockAligner':
pba.c:990:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
990 |
| ^
pba.c:928:15: note: 'out' was declared here
928 | long long total;
| ^~~
gcc -o psw psw.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pswdb.c
gcc -o pswdb pswdb.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ dbac.c
dbac.c: In function 'make_SeqAlign_from_align':
dbac.c:413:32: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' {aka 'long unsigned int'} [-Wformat=]
413 | fprintf(stderr,"Got %d with %d vs %d\n",i,strlen(seq),one->len);
| ~^ ~~~~~~~~~~~
| | |
| int size_t {aka long unsigned int}
| %ld
dbac.c: In function 'main':
dbac.c:463:7: warning: unused variable 'score' [-Wunused-variable]
463 | int score;
| ^~~~~
dbac.c:460:19: warning: unused variable 'dmat' [-Wunused-variable]
460 | DnaMatchBlock * dmat;
| ^~~~
dbac.c: In function 'showPFF':
dbac.c:259:38: warning: 'currMatch' may be used uninitialized [-Wmaybe-uninitialized]
259 | *( ((1-currMatch)/3)/0.25 )))/log(2);
| ~~^~~~~~~~~~~
dbac.c:169:10: note: 'currMatch' was declared here
169 | double currMatch;
| ^~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ dba.c
dba.c: In function 'Wise2_calculate_shatter_DnaMatchBlock':
dba.c:127:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
127 | int lenj;
| ^~~
dba.c:126:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
126 | int leni;
| ^~~
dba.c:124:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
124 | int k;
| ^~
dba.c: In function 'Wise2_serial_search_DnaMatchBlock':
dba.c:467:9: warning: unused variable 'db_status' [-Wunused-variable]
467 | Search_Return_Type serial_search_DnaMatchBlock(Hscore * out,ComplexSequence* query,ComplexSequence* target ,DnaMatrix* comp65,DnaMatrix* comp75,DnaMatrix* comp85,DnaMatrix* comp95,Score g,Score u,Score v,Score s,Score b)
| ^~~~~~~~~
dba.c: In function 'Wise2_PackAln_bestmemory_DnaMatchBlock':
dba.c:801:19: warning: unused variable 'de' [-Wunused-variable]
801 | DnaMatchBlock * mat;
| ^~
dba.c: In function 'Wise2_max_special_strip_DnaMatchBlock':
dba.c:1943:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1943 | {
| ^
dba.c:1942:9: warning: unused variable 'temp' [-Wunused-variable]
1942 | int max_special_strip_DnaMatchBlock(DnaMatchBlock * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
dba.c: In function 'Wise2_PackAln_bestmemory_DnaMatchBlock':
dba.c:862:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
862 |
| ^
dba.c:800:15: note: 'out' was declared here
800 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ slimdba.c
slimdba.c: In function 'Wise2_calculate_shatter_SlimDnaMatchBlock':
slimdba.c:124:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
124 | int lenj;
| ^~~
slimdba.c:123:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
123 | int leni;
| ^~~
slimdba.c:121:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
121 | int k;
| ^~
slimdba.c: In function 'Wise2_serial_search_SlimDnaMatchBlock':
slimdba.c:359:9: warning: unused variable 'db_status' [-Wunused-variable]
359 | Search_Return_Type serial_search_SlimDnaMatchBlock(Hscore * out,ComplexSequence* query,ComplexSequence* target ,DnaMatrix* comp65,Score g,Score u,Score v,Score s,Score b)
| ^~~~~~~~~
slimdba.c: In function 'Wise2_PackAln_bestmemory_SlimDnaMatchBlock':
slimdba.c:588:19: warning: unused variable 'de' [-Wunused-variable]
588 | SlimDnaMatchBlock * mat;
| ^~
slimdba.c: In function 'Wise2_max_special_strip_SlimDnaMatchBlock':
slimdba.c:1469:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1469 | {
| ^
slimdba.c:1468:9: warning: unused variable 'temp' [-Wunused-variable]
1468 | int max_special_strip_SlimDnaMatchBlock(SlimDnaMatchBlock * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
slimdba.c: In function 'Wise2_PackAln_bestmemory_SlimDnaMatchBlock':
slimdba.c:649:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
649 |
| ^
slimdba.c:587:15: note: 'out' was declared here
587 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ bigdba.c
bigdba.c: In function 'Wise2_calculate_shatter_BigDnaMatchBlock':
bigdba.c:128:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
128 | int lenj;
| ^~~
bigdba.c:127:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
127 | int leni;
| ^~~
bigdba.c:125:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
125 | int k;
| ^~
bigdba.c: In function 'Wise2_serial_search_BigDnaMatchBlock':
bigdba.c:507:9: warning: unused variable 'db_status' [-Wunused-variable]
507 | Search_Return_Type serial_search_BigDnaMatchBlock(Hscore * out,ComplexSequence* query,ComplexSequence* target ,DnaMatrix* comp55,DnaMatrix* comp65,DnaMatrix* comp75,DnaMatrix* comp85,DnaMatrix* comp95,Score g,Score g65,Score g55,Score u,Score v,Score s,Score b)
| ^~~~~~~~~
bigdba.c: In function 'Wise2_PackAln_bestmemory_BigDnaMatchBlock':
bigdba.c:880:19: warning: unused variable 'de' [-Wunused-variable]
880 | BigDnaMatchBlock * mat;
| ^~
bigdba.c: In function 'Wise2_max_special_strip_BigDnaMatchBlock':
bigdba.c:2117:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2117 | {
| ^
bigdba.c:2116:9: warning: unused variable 'temp' [-Wunused-variable]
2116 | int max_special_strip_BigDnaMatchBlock(BigDnaMatchBlock * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
bigdba.c: In function 'Wise2_PackAln_bestmemory_BigDnaMatchBlock':
bigdba.c:941:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
941 |
| ^
bigdba.c:879:15: note: 'out' was declared here
879 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ dbadisplay.c
dbadisplay.dy: In function 'Wise2_show_pretty_dba_align_btcanvas':
dbadisplay.dy:71:11: warning: variable 'is_reversed' set but not used [-Wunused-but-set-variable]
71 | boolean is_reversed;
| ^~~~~~~~~~~
dbadisplay.dy:278:34: warning: 'end_alc' may be used uninitialized [-Wmaybe-uninitialized]
278 | sprintf(buffer,"%d",end_alc->alu[0]->start+1);
| ~~~~~~~^~~~~
dbadisplay.dy:64:15: note: 'end_alc' was declared here
64 | AlnColumn * end_alc;
| ^~~~~~~
gcc -o dba dbac.o dba.o slimdba.o bigdba.o dbadisplay.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L estwise.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ -I.
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneparser21.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneparameter.c
geneparameter.dy: In function 'Wise2_GeneParameter21_from_GeneModel':
geneparameter.dy:132:25: warning: unused variable 'cse' [-Wunused-variable]
132 | ComplexSequenceEval * cse;
| ^~~
geneparameter.dy:131:25: warning: unused variable 'rmds' [-Wunused-variable]
131 | RandomModelDNAScore * rmds;
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genestats.c
genestats.dy: In function 'Wise2_get_genestat_emission':
genestats.dy:753:10: warning: unused variable 'd' [-Wunused-variable]
753 | double d;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genewisehsp.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneutil.c
geneutil.dy: In function 'Wise2_add_Genes_to_GenomicRegion_new':
geneutil.dy:92:15: warning: unused variable 'intron_start' [-Wunused-variable]
92 | AlnColumn * intron_start;
| ^~~~~~~~~~~~
geneutil.dy:82:7: warning: unused variable 'count' [-Wunused-variable]
82 | int count = 0;
| ^~~~~
geneutil.dy: In function 'Wise2_Gene_from_AlnColumn_new':
geneutil.dy:504:16: warning: 'ex' may be used uninitialized [-Wmaybe-uninitialized]
504 | out->end = ex->end + out->start;
| ~~^~~~~
geneutil.dy:367:10: note: 'ex' was declared here
367 | Exon * ex;
| ^~
geneutil.dy:446:20: warning: 'prev' may be used uninitialized [-Wmaybe-uninitialized]
446 | exon_end = prev->alu[1]->end +1 - out->start;
| ~~~~^~~~~
geneutil.dy:381:15: note: 'prev' was declared here
381 | AlnColumn * prev;
| ^~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneoutput.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ threestatemodel.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genefrequency.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ splicesitemodeler.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genewise4.c
genewise4.c: In function 'Wise2_calculate_shatter_GeneWise4':
genewise4.c:126:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
126 | int lenj;
| ^~~
genewise4.c:125:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
125 | int leni;
| ^~~
genewise4.c:123:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
123 | int k;
| ^~
genewise4.c: In function 'Wise2_PackAln_bestmemory_GeneWise4':
genewise4.c:1068:19: warning: unused variable 'de' [-Wunused-variable]
1068 | GeneWise4 * mat;
| ^~
genewise4.c: In function 'Wise2_max_special_strip_GeneWise4':
genewise4.c:2217:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2217 | {
| ^
genewise4.c:2216:9: warning: unused variable 'temp' [-Wunused-variable]
2216 | int max_special_strip_GeneWise4(GeneWise4 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
genewise4.c: In function 'Wise2_PackAln_bestmemory_GeneWise4':
genewise4.c:1129:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1129 |
| ^
genewise4.c:1067:15: note: 'out' was declared here
1067 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genewise6.c
genewise6.c: In function 'Wise2_calculate_shatter_GeneWise6':
genewise6.c:128:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
128 | int lenj;
| ^~~
genewise6.c:127:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
127 | int leni;
| ^~~
genewise6.c:125:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
125 | int k;
| ^~
genewise6.c: In function 'Wise2_PackAln_bestmemory_GeneWise6':
genewise6.c:1180:19: warning: unused variable 'de' [-Wunused-variable]
1180 | GeneWise6 * mat;
| ^~
genewise6.c: In function 'Wise2_max_special_strip_GeneWise6':
genewise6.c:2417:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2417 | {
| ^
genewise6.c:2416:9: warning: unused variable 'temp' [-Wunused-variable]
2416 | int max_special_strip_GeneWise6(GeneWise6 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
genewise6.c: In function 'Wise2_PackAln_bestmemory_GeneWise6':
genewise6.c:1241:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1241 |
| ^
genewise6.c:1179:15: note: 'out' was declared here
1179 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genestretch6.c
genestretch6.c: In function 'Wise2_calculate_shatter_GeneStretch6':
genestretch6.c:130:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
130 | int lenj;
| ^~~
genestretch6.c:129:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
129 | int leni;
| ^~~
genestretch6.c:127:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
127 | int k;
| ^~
genestretch6.c: In function 'Wise2_PackAln_bestmemory_GeneStretch6':
genestretch6.c:1339:19: warning: unused variable 'de' [-Wunused-variable]
1339 | GeneStretch6 * mat;
| ^~
genestretch6.c: In function 'Wise2_PackAln_calculate_Small_GeneStretch6':
genestretch6.c:1839:19: warning: unused variable 'pau' [-Wunused-variable]
1839 | int score;
| ^
genestretch6.c: In function 'Wise2_PackAln_bestmemory_GeneStretch6':
genestretch6.c:1400:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1400 |
| ^
genestretch6.c:1338:15: note: 'out' was declared here
1338 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genewise21.c
genewise21.c: In function 'Wise2_calculate_shatter_GeneWise21':
genewise21.c:154:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
154 | int lenj;
| ^~~
genewise21.c:153:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
153 | int leni;
| ^~~
genewise21.c:151:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
151 | int k;
| ^~
genewise21.c: In function 'Wise2_PackAln_bestmemory_GeneWise21':
genewise21.c:2606:19: warning: unused variable 'de' [-Wunused-variable]
2606 | GeneWise21 * mat;
| ^~
genewise21.c: In function 'Wise2_PackAln_calculate_Small_GeneWise21':
genewise21.c:3507:19: warning: unused variable 'pau' [-Wunused-variable]
3507 | int score;
| ^
genewise21.c: In function 'Wise2_PackAln_bestmemory_GeneWise21':
genewise21.c:2667:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
2667 |
| ^
genewise21.c:2605:15: note: 'out' was declared here
2605 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneloop21.c
geneloop21.c: In function 'Wise2_calculate_shatter_GeneLoop21':
geneloop21.c:147:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
147 | int lenj;
| ^~~
geneloop21.c:146:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
146 | int leni;
| ^~~
geneloop21.c:144:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
144 | int k;
| ^~
geneloop21.c: In function 'Wise2_PackAln_bestmemory_GeneLoop21':
geneloop21.c:2280:19: warning: unused variable 'de' [-Wunused-variable]
2280 | GeneLoop21 * mat;
| ^~
geneloop21.c: In function 'Wise2_PackAln_calculate_Small_GeneLoop21':
geneloop21.c:3093:19: warning: unused variable 'pau' [-Wunused-variable]
3093 | int score;
| ^
geneloop21.c: In function 'Wise2_PackAln_bestmemory_GeneLoop21':
geneloop21.c:2341:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
2341 |
| ^
geneloop21.c:2279:15: note: 'out' was declared here
2279 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneloop6.c
geneloop6.c: In function 'Wise2_calculate_shatter_GeneLoop6':
geneloop6.c:129:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
129 | int lenj;
| ^~~
geneloop6.c:128:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
128 | int leni;
| ^~~
geneloop6.c:126:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
126 | int k;
| ^~
geneloop6.c: In function 'Wise2_PackAln_bestmemory_GeneLoop6':
geneloop6.c:1268:19: warning: unused variable 'de' [-Wunused-variable]
1268 | GeneLoop6 * mat;
| ^~
geneloop6.c: In function 'Wise2_PackAln_calculate_Small_GeneLoop6':
geneloop6.c:1742:19: warning: unused variable 'pau' [-Wunused-variable]
1742 | int score;
| ^
geneloop6.c: In function 'Wise2_PackAln_bestmemory_GeneLoop6':
geneloop6.c:1329:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1329 |
| ^
geneloop6.c:1267:15: note: 'out' was declared here
1267 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genephase6.c
genephase6.c: In function 'Wise2_calculate_shatter_GenePhase6':
genephase6.c:215:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
215 | int lenj;
| ^~~
genephase6.c:214:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
214 | int leni;
| ^~~
genephase6.c:212:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
212 | int k;
| ^~
genephase6.c: In function 'Wise2_PackAln_bestmemory_GenePhase6':
genephase6.c:1492:19: warning: unused variable 'de' [-Wunused-variable]
1492 | GenePhase6 * mat;
| ^~
genephase6.c: In function 'Wise2_PackAln_calculate_Small_GenePhase6':
genephase6.c:2052:19: warning: unused variable 'pau' [-Wunused-variable]
2052 | int score;
| ^
genephase6.c: In function 'Wise2_thread_loop_GenePhase6':
genephase6.c:873:1: warning: control reaches end of non-void function [-Wreturn-type]
873 | {
| ^
genephase6.c: In function 'Wise2_PackAln_bestmemory_GenePhase6':
genephase6.c:1553:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1553 |
| ^
genephase6.c:1491:15: note: 'out' was declared here
1491 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ gwlite.c
gwlite.c: In function 'Wise2_calculate_shatter_GeneLiteModel':
gwlite.c:127:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
127 | int lenj;
| ^~~
gwlite.c:126:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
126 | int leni;
| ^~~
gwlite.c:124:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
124 | int k;
| ^~
gwlite.c: In function 'Wise2_PackAln_bestmemory_GeneLiteModel':
gwlite.c:1117:19: warning: unused variable 'de' [-Wunused-variable]
1117 | GeneLiteModel * mat;
| ^~
gwlite.c: In function 'Wise2_max_special_strip_GeneLiteModel':
gwlite.c:2294:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2294 | {
| ^
gwlite.c:2293:9: warning: unused variable 'temp' [-Wunused-variable]
2293 | int max_special_strip_GeneLiteModel(GeneLiteModel * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
gwlite.c: In function 'Wise2_PackAln_bestmemory_GeneLiteModel':
gwlite.c:1178:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1178 |
| ^
gwlite.c:1116:15: note: 'out' was declared here
1116 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ gwlitemodel.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ gwrap.c
gwrap.dy: In function 'Wise2_Hscore_from_TSM_genewise':
gwrap.dy:527:25: warning: unused variable 'tempcse' [-Wunused-variable]
527 | ComplexSequenceEval * tempcse;
| ^~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ matchsum.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estwrap.c
estwrap.dy: In function 'Wise2_Hscore_from_TSM_estwise':
estwrap.dy:269:22: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
269 | Search_Return_Type ret;
| ^~~
estwrap.dy: In function 'Wise2_AlnBlock_from_TSM_estwise_wrap':
estwrap.dy:244:10: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
244 | return out;
| ^~~
estwrap.dy:138:14: note: 'out' was declared here
138 | AlnBlock * out;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genewisemodel.c
genewisemodel.dy: In function 'Wise2_pack_GeneWiseScore':
genewisemodel.dy:114:10: warning: 'out' is used uninitialized [-Wuninitialized]
114 | return out;
| ^~~
genewisemodel.dy:112:10: note: 'out' was declared here
112 | char * out;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ phasemodel.c
phasemodel.dy: In function 'Wise2_read_ProteinIntronList':
phasemodel.dy:65:10: warning: unused variable 'run2' [-Wunused-variable]
65 | char * run2;
| ^~~~
phasemodel.dy:64:10: warning: unused variable 'run1' [-Wunused-variable]
64 | char * run1;
| ^~~~
phasemodel.dy: In function 'Wise2_read_fasta_PhasedProtein':
phasemodel.dy:233:7: warning: unused variable 'j' [-Wunused-variable]
233 | int j;
| ^
phasemodel.dy:231:14: warning: unused variable 'input' [-Wunused-variable]
231 | Sequence * input;
| ^~~~~
phasemodel.dy:241:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
241 | fgets(name,10000,ifp);
| ^~~~~~~~~~~~~~~~~~~~~
phasemodel.dy:241:3: warning: 'fgets' writing 10000 bytes into a region of size 2000 overflows the destination [-Wstringop-overflow=]
241 | fgets(name,10000,ifp);
| ^~~~~~~~~~~~~~~~~~~~~
phasemodel.dy:235:8: note: destination object 'name' of size 2000
235 | char name[2000];
| ^~~~
In file included from /usr/include/stdio.h:906,
from ../base/wisebase.h:6,
from ../dynlibsrc/probability.h:7,
from geneparser21.h:6,
from genewisemodel.h:6,
from phasemodel.h:6,
from phasemodel.c:4:
/usr/include/bits/stdio2.h:209:1: note: in a call to function 'fgets' declared with attribute 'access (write_only, 1, 2)'
209 | fgets (char *__restrict __s, int __n, FILE *__restrict __stream)
| ^~~~~
In function 'fgets',
inlined from 'Wise2_read_fasta_PhasedProtein' at phasemodel.dy:241:3:
/usr/include/bits/stdio2.h:215:12: warning: call to '*__fgets_chk' declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning]
215 | return __fgets_chk_warn (__s, sz, __n, __stream);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ cdparser.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genedisplay.c
genedisplay.dy: In function 'Wise2_write_intron_desc':
genedisplay.dy:493:20: warning: too many arguments for format [-Wformat-extra-args]
493 | sprintf(buffer," Intron ??? ",in_number);
| ^~~~~~~~~~~~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estwise3.c
estwise3.c: In function 'Wise2_calculate_shatter_EstWise3':
estwise3.c:124:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
124 | int lenj;
| ^~~
estwise3.c:123:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
123 | int leni;
| ^~~
estwise3.c:121:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
121 | int k;
| ^~
estwise3.c: In function 'Wise2_PackAln_bestmemory_EstWise3':
estwise3.c:1144:19: warning: unused variable 'de' [-Wunused-variable]
1144 | EstWise3 * mat;
| ^
estwise3.c: In function 'Wise2_max_special_strip_EstWise3':
estwise3.c:2402:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2402 | {
| ^
estwise3.c:2401:9: warning: unused variable 'temp' [-Wunused-variable]
2401 | int max_special_strip_EstWise3(EstWise3 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
estwise3.c: In function 'Wise2_PackAln_bestmemory_EstWise3':
estwise3.c:1205:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1205 |
| ^
estwise3.c:1143:15: note: 'out' was declared here
1143 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estslim3.c
estslim3.c: In function 'Wise2_calculate_shatter_EstSlim3':
estslim3.c:124:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
124 | int lenj;
| ^~~
estslim3.c:123:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
123 | int leni;
| ^~~
estslim3.c:121:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
121 | int k;
| ^~
estslim3.c: In function 'Wise2_PackAln_bestmemory_EstSlim3':
estslim3.c:936:19: warning: unused variable 'de' [-Wunused-variable]
936 | EstSlim3 * mat;
| ^
estslim3.c: In function 'Wise2_max_special_strip_EstSlim3':
estslim3.c:1894:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1894 | {
| ^
estslim3.c:1893:9: warning: unused variable 'temp' [-Wunused-variable]
1893 | int max_special_strip_EstSlim3(EstSlim3 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
estslim3.c: In function 'Wise2_PackAln_bestmemory_EstSlim3':
estslim3.c:997:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
997 |
| ^
estslim3.c:935:15: note: 'out' was declared here
935 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estloop3.c
estloop3.c: In function 'Wise2_calculate_shatter_EstLoop3':
estloop3.c:125:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
125 | int lenj;
| ^~~
estloop3.c:124:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
124 | int leni;
| ^~~
estloop3.c:122:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
122 | int k;
| ^~
estloop3.c: In function 'Wise2_PackAln_bestmemory_EstLoop3':
estloop3.c:1312:19: warning: unused variable 'de' [-Wunused-variable]
1312 | EstLoop3 * mat;
| ^
estloop3.c: In function 'Wise2_PackAln_calculate_Small_EstLoop3':
estloop3.c:1809:19: warning: unused variable 'pau' [-Wunused-variable]
1809 | int score;
| ^
estloop3.c: In function 'Wise2_PackAln_bestmemory_EstLoop3':
estloop3.c:1373:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1373 |
| ^
estloop3.c:1311:15: note: 'out' was declared here
1311 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estfrag3.c
estfrag3.c: In function 'Wise2_calculate_shatter_EstFrag3':
estfrag3.c:124:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
124 | int lenj;
| ^~~
estfrag3.c:123:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
123 | int leni;
| ^~~
estfrag3.c:121:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
121 | int k;
| ^~
estfrag3.c: In function 'Wise2_PackAln_bestmemory_EstFrag3':
estfrag3.c:965:19: warning: unused variable 'de' [-Wunused-variable]
965 | EstFrag3 * mat;
| ^
estfrag3.c: In function 'Wise2_max_special_strip_EstFrag3':
estfrag3.c:2242:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2242 | {
| ^
estfrag3.c:2241:9: warning: unused variable 'temp' [-Wunused-variable]
2241 | int max_special_strip_EstFrag3(EstFrag3 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
estfrag3.c: In function 'Wise2_PackAln_bestmemory_EstFrag3':
estfrag3.c:1026:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1026 |
| ^
estfrag3.c:964:15: note: 'out' was declared here
964 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estslimloop.c
estslimloop.c: In function 'Wise2_calculate_shatter_EstSlimLoop3':
estslimloop.c:125:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
125 | int lenj;
| ^~~
estslimloop.c:124:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
124 | int leni;
| ^~~
estslimloop.c:122:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
122 | int k;
| ^~
estslimloop.c: In function 'Wise2_PackAln_bestmemory_EstSlimLoop3':
estslimloop.c:1114:19: warning: unused variable 'de' [-Wunused-variable]
1114 | EstSlimLoop3 * mat;
| ^~
estslimloop.c: In function 'Wise2_PackAln_calculate_Small_EstSlimLoop3':
estslimloop.c:1535:19: warning: unused variable 'pau' [-Wunused-variable]
1535 | int score;
| ^
estslimloop.c: In function 'Wise2_PackAln_bestmemory_EstSlimLoop3':
estslimloop.c:1175:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1175 |
| ^
estslimloop.c:1113:15: note: 'out' was declared here
1113 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ gwquickdb.c
gwquickdb.dy: In function 'Wise2_init_GeneWiseQuickDB':
gwquickdb.dy:46:1: warning: control reaches end of non-void function [-Wreturn-type]
46 | }
| ^
gwquickdb.dy: In function 'Wise2_reload_GeneWiseQuickDB':
gwquickdb.dy:65:1: warning: control reaches end of non-void function [-Wreturn-type]
65 | }
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ threestatedb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pfamhmmer1db.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pwmdna.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../HMMer2/ -DHMMER_INTERNAL -I../base/ -I../dynlibsrc/ wise2xhmmer2.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genewisemodeldb.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ seqhit.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ standardout.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ geneparser4.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ estquick3.c
estquick3.c: In function 'Wise2_calculate_shatter_EstQuick3':
estquick3.c:124:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
124 | int lenj;
| ^~~
estquick3.c:123:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
123 | int leni;
| ^~~
estquick3.c:121:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
121 | int k;
| ^~
estquick3.c: In function 'Wise2_PackAln_bestmemory_EstQuick3':
estquick3.c:860:19: warning: unused variable 'de' [-Wunused-variable]
860 | EstQuick3 * mat;
| ^~
estquick3.c: In function 'Wise2_max_special_strip_EstQuick3':
estquick3.c:1766:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1766 | {
| ^
estquick3.c:1765:9: warning: unused variable 'temp' [-Wunused-variable]
1765 | int max_special_strip_EstQuick3(EstQuick3 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
estquick3.c: In function 'Wise2_PackAln_bestmemory_EstQuick3':
estquick3.c:921:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
921 |
| ^
estquick3.c:859:15: note: 'out' was declared here
859 | long long total;
| ^~~
gcc -g -o estwise estwise.o geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -lhmmer -ldyna_glib -ldyna -lwisebase -lm -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0`
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L genewise.c -I../base/ -I../dynlibsrc/ -I../HMMer2/ -I.
genewise.c: In function 'build_objects':
genewise.c:446:10: warning: unused variable 'ifp' [-Wunused-variable]
446 | FILE * ifp;
| ^~~
gcc -o genewise genewise.o geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -lhmmer -ldyna_glib -ldyna_glib -ldyna_glib -ldyna -lwisebase -lm -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0`
In function 'Wise2_GeneWiseCodonModel_from_GeneFrequencies',
inlined from 'Wise2_GeneParameter21_from_GeneFrequency21' at geneparameter.dy:205:15:
geneparameter.dy:115:34: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
115 | out->in_acceptor[perm] = acceptor->gsc[l]->number / 64.0;
| ^
geneparameter.dy:108:14: note: within this loop
108 | for(i=0;i<4;i++)
| ^
geneparameter.dy:97:24: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
97 | out->in_donor[perm] += donor->gsc[l]->number / 64.0;
| ^
geneparameter.dy:90:14: note: within this loop
90 | for(i=0;i<4;i++)
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L genewisedb.c -I../base/ -I../dynlibsrc/ -I../HMMer2/
In file included from ../dynlibsrc/dyna.h:53,
from threestatemodel.h:7,
from wise2xhmmer2.h:24,
from genewisedb.c:4:
genewisedb.c: In function 'show_output':
../dynlibsrc/genomicregion.h:453:35: warning: 'cgr' may be used uninitialized [-Wmaybe-uninitialized]
453 | #define add_Gene_to_GenomicRegion Wise2_add_Gene_to_GenomicRegion
genewisedb.c:216:19: note: 'cgr' was declared here
216 | GenomicRegion * cgr;
| ^~~
gcc -g -o genewisedb genewisedb.o geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -lhmmer -ldyna_glib -ldyna -lwisebase -lm -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0`
In function 'Wise2_GeneWiseCodonModel_from_GeneFrequencies',
inlined from 'Wise2_GeneParameter21_from_GeneFrequency21' at geneparameter.dy:205:15,
inlined from 'Wise2_GeneParameter21_wrap' at gwrap.dy:76:9,
inlined from 'build_db_objects' at genewisedb.c:554:11:
geneparameter.dy:115:34: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
115 | out->in_acceptor[perm] = acceptor->gsc[l]->number / 64.0;
| ^
geneparameter.dy:108:14: note: within this loop
108 | for(i=0;i<4;i++)
| ^
geneparameter.dy:97:24: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
97 | out->in_donor[perm] += donor->gsc[l]->number / 64.0;
| ^
geneparameter.dy:90:14: note: within this loop
90 | for(i=0;i<4;i++)
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L estwisedb.c -I../base/ -I../dynlibsrc/ -I../HMMer2/
In file included from ../dynlibsrc/dyna.h:29,
from threestatemodel.h:7,
from wise2xhmmer2.h:24,
from estwisedb.c:4:
estwisedb.c: In function 'show_output':
../dynlibsrc/aln.h:222:34: warning: 'anchored' may be used uninitialized [-Wmaybe-uninitialized]
222 | #define add_to_anchored_AlnBlock Wise2_add_to_anchored_AlnBlock
estwisedb.c:182:14: note: 'anchored' was declared here
182 | AlnBlock * anchored;
| ^~~~~~~~
In file included from ../dynlibsrc/seqalign.h:6,
from wise2xhmmer2.h:23:
../dynlibsrc/sequence.h:665:25: warning: 'set' may be used uninitialized [-Wmaybe-uninitialized]
665 | #define add_SequenceSet Wise2_add_SequenceSet
estwisedb.c:183:17: note: 'set' was declared here
183 | SequenceSet * set;
| ^~~
gcc -g -o estwisedb estwisedb.o geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -lhmmer -ldyna_glib -ldyna -lwisebase -lm -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0`
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genomewise.c
genomewise.c: In function 'main':
genomewise.c:95:10: warning: unused variable 'divide_string' [-Wunused-variable]
95 | char * divide_string = "//";
| ^~~~~~~~~~~~~
genomewise.c:81:7: warning: unused variable 'kbyte' [-Wunused-variable]
81 | int kbyte = 10000;
| ^~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genomewise9.c
genomewise9.c: In function 'Wise2_calculate_shatter_GenomeWise9':
genomewise9.c:137:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
137 | int lenj;
| ^~~
genomewise9.c:136:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
136 | int leni;
| ^~~
genomewise9.c:134:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
134 | int k;
| ^~
genomewise9.c: In function 'Wise2_PackAln_bestmemory_GenomeWise9':
genomewise9.c:1331:19: warning: unused variable 'de' [-Wunused-variable]
1331 | GenomeWise9 * mat;
| ^~
genomewise9.c: In function 'Wise2_PackAln_calculate_Small_GenomeWise9':
genomewise9.c:1895:19: warning: unused variable 'pau' [-Wunused-variable]
1895 | int score;
| ^
genomewise9.c: In function 'Wise2_thread_loop_GenomeWise9':
genomewise9.c:745:1: warning: control reaches end of non-void function [-Wreturn-type]
745 | {
| ^
genomewise9.c: In function 'Wise2_PackAln_bestmemory_GenomeWise9':
genomewise9.c:1392:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1392 |
| ^
genomewise9.c:1330:15: note: 'out' was declared here
1330 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ genome_evidence.c
genome_evidence.dy: In function 'Wise2_free_GenomeEvidenceUnit':
genome_evidence.dy:61:1: warning: control reaches end of non-void function [-Wreturn-type]
61 | }
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ est_evidence.c
est_evidence.dy: In function 'Wise2_new_est_GenomeEvidenceUnit':
est_evidence.dy:142:16: warning: assignment to 'int (*)(void *)' from incompatible pointer type 'Wise2_EstEvidence * (*)(Wise2_EstEvidence *)' [-Wincompatible-pointer-types]
142 | in->geu_free = free_EstEvidence;
| ^
est_evidence.dy: In function 'Wise2_est_start_pot':
est_evidence.dy:183:7: warning: unused variable 'i' [-Wunused-variable]
183 | int i;
| ^
est_evidence.dy: In function 'Wise2_est_stop_pot':
est_evidence.dy:203:7: warning: unused variable 'i' [-Wunused-variable]
203 | int i;
| ^
gcc -g -o genomewise genomewise.o genomewise9.o genome_evidence.o est_evidence.o geneoutput.o geneutil.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ sywise.c
sywise.c: In function 'make_PairBaseCodonModelScore':
sywise.c:64:10: warning: unused variable 'ifp' [-Wunused-variable]
64 | FILE * ifp;
| ^~~
sywise.c: In function 'show_score_sequence':
sywise.c:117:37: warning: array subscript has type 'char' [-Wchar-subscripts]
117 | match_score = m->base[pbs->seq[alc->alu[1]->start+1]];
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
sywise.c:118:38: warning: array subscript has type 'char' [-Wchar-subscripts]
118 | match_score += m->base[pbs->seq[alc->alu[1]->start+2]];
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
sywise.c:119:38: warning: array subscript has type 'char' [-Wchar-subscripts]
119 | match_score += m->base[pbs->seq[alc->alu[1]->start+3]];
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
sywise.c: In function 'main':
sywise.c:212:11: warning: unused variable 'show_gene_raw' [-Wunused-variable]
212 | boolean show_gene_raw = 0;
| ^~~~~~~~~~~~~
sywise.c:211:11: warning: unused variable 'show_trans' [-Wunused-variable]
211 | boolean show_trans = 1;
| ^~~~~~~~~~
sywise.c:204:27: warning: variable 'std_opt' set but not used [-Wunused-but-set-variable]
204 | StandardOutputOptions * std_opt;
| ^~~~~~~
sywise.c:202:13: warning: unused variable 'trans' [-Wunused-variable]
202 | Protein * trans;
| ^~~~~
sywise.c:201:19: warning: variable 'gr2' set but not used [-Wunused-but-set-variable]
201 | GenomicRegion * gr2;
| ^~~
sywise.c:183:13: warning: unused variable 'score_mat' [-Wunused-variable]
183 | CompMat * score_mat;
| ^~~~~~~~~
sywise.c:168:7: warning: unused variable 'i' [-Wunused-variable]
168 | int i;
| ^
In file included from sywise.c:1:
sywise20.h:328:46: warning: 'pal' may be used uninitialized [-Wmaybe-uninitialized]
328 | #define convert_PackAln_to_AlnBlock_SyWise20 Wise2_convert_PackAln_to_AlnBlock_SyWise20
sywise.c:196:13: note: 'pal' was declared here
196 | PackAln * pal;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ sywise20.c
sywise20.c: In function 'Wise2_calculate_shatter_SyWise20':
sywise20.c:137:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
137 | int lenj;
| ^~~
sywise20.c:136:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
136 | int leni;
| ^~~
sywise20.c:134:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
134 | int k;
| ^~
sywise20.c: In function 'Wise2_serial_search_SyWise20':
sywise20.c:789:9: warning: unused variable 'db_status' [-Wunused-variable]
789 | Search_Return_Type serial_search_SyWise20(Hscore * out,SyExonScore* exonmodel,ComplexSequence* seq ,PairBaseCodonModelScore* codon,PairBaseModelScore* nonc,PairBaseCodonModelScore* start,PairBaseCodonModelScore* stop,Score intron_open,Score gene_open,Score nonc_cost)
| ^~~~~~~~~
sywise20.c: In function 'Wise2_PackAln_bestmemory_SyWise20':
sywise20.c:1355:19: warning: unused variable 'de' [-Wunused-variable]
1355 | SyWise20 * mat;
| ^
sywise20.c: In function 'Wise2_PackAln_calculate_Small_SyWise20':
sywise20.c:1943:19: warning: unused variable 'pau' [-Wunused-variable]
1943 | int score;
| ^
sywise20.c: In function 'Wise2_thread_loop_SyWise20':
sywise20.c:764:1: warning: control reaches end of non-void function [-Wreturn-type]
764 | {
| ^
sywise20.c: In function 'Wise2_PackAln_bestmemory_SyWise20':
sywise20.c:1416:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1416 |
| ^
sywise20.c:1354:15: note: 'out' was declared here
1354 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ syexonmodel.c
gcc -g -o sywise sywise.o sywise20.o syexonmodel.o genestats.o pwmdna.o standardout.o geneutil.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pseudowise.c
pseudowise.c: In function 'pseudo_gene_assessment':
pseudowise.c:99:39: warning: array subscript has type 'char' [-Wchar-subscripts]
99 | if( protein->comp[aa][pep->seq[pep_pos]] < 0 ) {
| ~~~~~~~~^~~~~~~~~
pseudowise.c:57:9: warning: unused variable 'j' [-Wunused-variable]
57 | int i,j;
| ^
pseudowise.c:57:7: warning: unused variable 'i' [-Wunused-variable]
57 | int i,j;
| ^
pseudowise.c: In function 'main':
pseudowise.c:180:7: warning: variable 'offset' set but not used [-Wunused-but-set-variable]
180 | int offset;
| ^~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pseudowise7.c
pseudowise7.c: In function 'Wise2_calculate_shatter_PseudoWise7':
pseudowise7.c:128:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
128 | int lenj;
| ^~~
pseudowise7.c:127:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
127 | int leni;
| ^~~
pseudowise7.c:125:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
125 | int k;
| ^~
pseudowise7.c: In function 'Wise2_PackAln_bestmemory_PseudoWise7':
pseudowise7.c:1207:19: warning: unused variable 'de' [-Wunused-variable]
1207 | PseudoWise7 * mat;
| ^~
pseudowise7.c: In function 'Wise2_max_special_strip_PseudoWise7':
pseudowise7.c:2471:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
2471 | {
| ^
pseudowise7.c:2470:9: warning: unused variable 'temp' [-Wunused-variable]
2470 | int max_special_strip_PseudoWise7(PseudoWise7 * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
pseudowise7.c: In function 'Wise2_PackAln_bestmemory_PseudoWise7':
pseudowise7.c:1268:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
1268 |
| ^
pseudowise7.c:1206:15: note: 'out' was declared here
1206 | long long total;
| ^~~
gcc -g -o pseudowise pseudowise.o pseudowise7.o geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -lhmmer -ldyna_glib -ldyna -lwisebase -lm -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0`
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ `pkg-config --cflags glib-2.0` promoterwise.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ localdba.c
localdba.c: In function 'Wise2_calculate_shatter_LocalDnaMatchBlock':
localdba.c:127:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
127 | int lenj;
| ^~~
localdba.c:126:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
126 | int leni;
| ^~~
localdba.c:124:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
124 | int k;
| ^~
localdba.c: In function 'Wise2_serial_search_LocalDnaMatchBlock':
localdba.c:487:9: warning: unused variable 'db_status' [-Wunused-variable]
487 | Search_Return_Type serial_search_LocalDnaMatchBlock(Hscore * out,ComplexSequence* query,ComplexSequence* target ,LocalCisHitScore* lchs)
| ^~~~~~~~~
localdba.c: In function 'Wise2_PackAln_bestmemory_LocalDnaMatchBlock':
localdba.c:841:19: warning: unused variable 'de' [-Wunused-variable]
841 | LocalDnaMatchBlock * mat;
| ^~
localdba.c: In function 'Wise2_max_special_strip_LocalDnaMatchBlock':
localdba.c:1984:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1984 | {
| ^
localdba.c:1983:9: warning: unused variable 'temp' [-Wunused-variable]
1983 | int max_special_strip_LocalDnaMatchBlock(LocalDnaMatchBlock * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
localdba.c: In function 'Wise2_PackAln_bestmemory_LocalDnaMatchBlock':
localdba.c:902:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
902 |
| ^
localdba.c:840:15: note: 'out' was declared here
840 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ `pkg-config --cflags glib-2.0` localcishit.c
localcishit.dy: In function 'Wise2_expand_to_subhits_LocalCisHitSet':
localcishit.dy:91:7: warning: variable 'score' set but not used [-Wunused-but-set-variable]
91 | int score;
| ^~~~~
localcishit.dy:90:7: warning: unused variable 'score_start' [-Wunused-variable]
90 | int score_start;
| ^~~~~~~~~~~
localcishit.dy:89:7: warning: unused variable 'tend' [-Wunused-variable]
89 | int tend;
| ^~~~
localcishit.dy:88:7: warning: unused variable 'qend' [-Wunused-variable]
88 | int qend;
| ^~~~
localcishit.dy:87:7: warning: variable 'tstart' set but not used [-Wunused-but-set-variable]
87 | int tstart;
| ^~~~~~
localcishit.dy:86:7: warning: variable 'qstart' set but not used [-Wunused-but-set-variable]
86 | int qstart;
| ^~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ localcispara.c
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ motifmatrix.c
motifmatrix.c: In function 'Wise2_MotifConsMatrix_alloc_matrix':
motifmatrix.c:408:24: warning: assignment to 'char' from 'void *' makes integer from pointer without a cast [-Wint-conversion]
408 | for(i=0;i<leni;i++) {
| ^
motifmatrix.c: In function 'Wise2_free_MotifConsMatrix':
motifmatrix.c:533:9: warning: unused variable 'j' [-Wunused-variable]
533 | int return_early = 0;
| ^
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ motifmatrixdp.c
motifmatrixdp.c: In function 'Wise2_calculate_shatter_LocalMotifMatrix':
motifmatrixdp.c:125:9: warning: variable 'num' set but not used [-Wunused-but-set-variable]
125 | int lenj;
| ^~~
motifmatrixdp.c:124:9: warning: variable 'tot' set but not used [-Wunused-but-set-variable]
124 | int leni;
| ^~~
motifmatrixdp.c:122:9: warning: variable 'leni' set but not used [-Wunused-but-set-variable]
122 | int k;
| ^~
motifmatrixdp.c: In function 'Wise2_serial_search_LocalMotifMatrix':
motifmatrixdp.c:371:9: warning: unused variable 'db_status' [-Wunused-variable]
371 | Search_Return_Type serial_search_LocalMotifMatrix(Hscore * out,ComplexSequence* query,ComplexSequence* target ,MotifConsMatrix* motif,MotifMatrixScore* ms)
| ^~~~~~~~~
motifmatrixdp.c: In function 'Wise2_PackAln_bestmemory_LocalMotifMatrix':
motifmatrixdp.c:611:19: warning: unused variable 'de' [-Wunused-variable]
611 | LocalMotifMatrix * mat;
| ^~
motifmatrixdp.c: In function 'Wise2_max_special_strip_LocalMotifMatrix':
motifmatrixdp.c:1551:9: warning: variable 'cscore' set but not used [-Wunused-but-set-variable]
1551 | {
| ^
motifmatrixdp.c:1550:9: warning: unused variable 'temp' [-Wunused-variable]
1550 | int max_special_strip_LocalMotifMatrix(LocalMotifMatrix * mat,int i,int j,int state,boolean isspecial,int * reti,int * retj,int * retstate,boolean * retspecial,int * cellscore)
| ^~~~
motifmatrixdp.c: In function 'Wise2_PackAln_bestmemory_LocalMotifMatrix':
motifmatrixdp.c:672:12: warning: 'out' may be used uninitialized [-Wmaybe-uninitialized]
672 |
| ^
motifmatrixdp.c:610:15: note: 'out' was declared here
610 | long long total;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ transfactor.c
transfactor.dy: In function 'Wise2_max_prob_TransFactor':
transfactor.dy:487:7: warning: variable 'maxj' set but not used [-Wunused-but-set-variable]
487 | int maxj;
| ^~~~
transfactor.dy: In function 'Wise2_read_ben_IUPAC_TransFactorSet':
transfactor.dy:625:7: warning: unused variable 'seq_no' [-Wunused-variable]
625 | int seq_no = 1;
| ^~~~~~
transfactor.dy: In function 'Wise2_build_TransFactorSet':
transfactor.dy:339:1: warning: control reaches end of non-void function [-Wreturn-type]
339 | }
| ^
transfactor.dy: In function 'Wise2_read_TransFactor':
transfactor.dy:888:13: warning: 'temp' may be used uninitialized [-Wmaybe-uninitialized]
888 | out->seed = temp;
| ~~~~~~~~~~^~~~~~
transfactor.dy:838:14: note: 'temp' was declared here
838 | SeqAlign * temp;
| ^~~~
transfactor.dy: In function 'Wise2_read_ben_IUPAC_TransFactorSet':
transfactor.dy:680:21: warning: '%s' directive writing up to 511 bytes into a region of size between 494 and 504 [-Wformat-overflow=]
680 | sprintf(sbuffer,"motif_%d_%s",motif_no,buffer);
| ^~~~~~~~~~~~~ ~~~~~~
In file included from /usr/include/stdio.h:906,
from ../base/wisebase.h:6,
from pwmdna.h:6,
from transfactor.h:6,
from transfactor.c:4:
In function '*__sprintfieee128',
inlined from 'Wise2_read_ben_IUPAC_TransFactorSet' at transfactor.dy:680:5:
/usr/include/bits/stdio2.h:30:10: note: '*__sprintf_chkieee128' output between 9 and 530 bytes into a destination of size 512
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
transfactor.dy: In function 'Wise2_calculate_TransFactorMatchSet':
transfactor.dy:427:9: warning: 'cutoff' may be used uninitialized [-Wmaybe-uninitialized]
427 | if( prob > cutoff ) {
| ^
transfactor.dy:366:10: note: 'cutoff' was declared here
366 | double cutoff;
| ^~~~~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ pairwiseshortdna.c
pairwiseshortdna.dy: In function 'Wise2_query_to_reverse_target':
pairwiseshortdna.dy:56:11: warning: variable 'reverse_tree' set but not used [-Wunused-but-set-variable]
56 | GTree * reverse_tree;
| ^~~~~~~~~~~~
pairwiseshortdna.dy:55:11: warning: variable 'forward_tree' set but not used [-Wunused-but-set-variable]
55 | GTree * forward_tree;
| ^~~~~~~~~~~~
gcc -g -o promoterwise promoterwise.o localdba.o localcishit.o localcispara.o dbadisplay.o motifmatrix.o motifmatrixdp.o transfactor.o pwmdna.o pairwiseshortdna.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -ldyna_glib -ldyna -lwisebase -lm `pkg-config --libs glib-2.0` -lpthread
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ -o scanwisep_wiseserver.o -DSCAN_WISESERVER -I../network -I../socket -I../external/mott scanwisep.c
scanwisep.c: In function 'new_HSPScanInterface_from_ScanWiseHSPImpl':
scanwisep.c:73:7: warning: unused variable 'c' [-Wunused-variable]
73 | int c;
| ^
scanwisep.c:72:7: warning: unused variable 'ret' [-Wunused-variable]
72 | int ret;
| ^~~
scanwisep.c:70:14: warning: unused variable 'seq' [-Wunused-variable]
70 | Sequence * seq;
| ^~~
scanwisep.c: In function 'HitPair_from_HSPset_sw':
scanwisep.c:305:7: warning: unused variable 'i' [-Wunused-variable]
305 | int i;
| ^
scanwisep.c: In function 'HitList_from_LinearHSPmanager_sw':
scanwisep.c:326:30: warning: unused variable 'conv' [-Wunused-variable]
326 | struct convert_data_fulldp conv;
| ^~~~
scanwisep.c: In function 'main':
scanwisep.c:476:25: warning: variable 'ssl' set but not used [-Wunused-but-set-variable]
476 | SearchStatInterface * ssl;
| ^~~
gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -pthread -D_GNU_SOURCE -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-4 -pthread -D_POSIX_C_SOURCE=200112L -I../base/ -I../dynlibsrc/ `pkg-config --cflags glib-2.0` hsp2aln_sw.c
hsp2aln_sw.dy: In function 'Wise2_worker_thread_LM2HitList':
hsp2aln_sw.dy:119:71: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
119 | if( tm->current_pos >= tm->input->len || tm->para->no_hitalns > 0 && tm->current_pos > tm->para->no_hitalns ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -o scanwise scanwisep_wiseserver.o sw_wrap.o seqaligndisplay.o proteinsw.o abc.o pba.o hsp2aln_sw.o ../network/net_hspscan.o ../network/client_multihspscan.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0` -L../external/mott -L../socket -lmott -ldyna_glib -ldyna -lwisesocket -lwisebase -lm -lpthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -L../base/ -L../dynlibsrc/ -L../HMMer2/ -lpthread `pkg-config --libs glib-2.0`
ar ru libmodel.a geneparser21.o geneparameter.o genestats.o genewisehsp.o geneutil.o geneoutput.o threestatemodel.o genefrequency.o splicesitemodeler.o genewise4.o genewise6.o genestretch6.o genewise21.o geneloop21.o geneloop6.o genephase6.o gwlite.o gwlitemodel.o gwrap.o matchsum.o estwrap.o genewisemodel.o phasemodel.o cdparser.o genedisplay.o estwise3.o estslim3.o estloop3.o estfrag3.o estslimloop.o gwquickdb.o threestatedb.o pfamhmmer1db.o pwmdna.o wise2xhmmer2.o genewisemodeldb.o seqhit.o standardout.o geneparser4.o sw_wrap.o abc.o pba.o seqaligndisplay.o dbadisplay.o proteinsw.o estquick3.o
ar: creating libmodel.a
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src/models'
make bin
make[1]: Entering directory '/builddir/build/BUILD/wise2.4.1/src'
mkdir bin
cp models/pswdb models/psw models/genewisedb models/estwisedb models/estwise models/genewise models/dba models/dnal models/promoterwise network/scanwise_server models/scanwise ./bin
./welcome.csh
Welcome to Wise2.4
The executable programs are in the ./bin directory
You must set your WISECONFIGDIR to the config directory
before using the programs
ie, type setenv WISECONFIGDIR /builddir/build/BUILD/wise2.4.1/src/../wisecfg/
to try an example, try cd example and then
../bin/genewise road.pep human.genomic
to build perl, type make perl and follow the instructions
to test the package, type make test
make[1]: Leaving directory '/builddir/build/BUILD/wise2.4.1/src'
make: Leaving directory '/builddir/build/BUILD/wise2.4.1/src'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bLw0r1
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le
++ dirname /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd wise2.4.1
+ pushd src/bin
~/build/BUILD/wise2.4.1/src/bin ~/build/BUILD/wise2.4.1
+ mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 dba /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 dnal /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 estwise /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 estwisedb /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 genewise /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 genewisedb /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 promoterwise /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 scanwise /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 scanwise_server /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 psw /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ for i in dba dnal estwise estwisedb genewise genewisedb promoterwise scanwise scanwise_server psw pswdb
+ install -pm 755 pswdb /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin
+ popd
~/build/BUILD/wise2.4.1
+ mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/wise2
+ pushd wisecfg
~/build/BUILD/wise2.4.1/wisecfg ~/build/BUILD/wise2.4.1
+ install -pm 644 BLOSUM30.bla BLOSUM45.bla BLOSUM62.bla BLOSUM80.bla aa.rnd cb.tmf codon.martian codon.table gene.stat gon120.bla gon160.bla gon200.bla gon250.bla gon350.bla human.gf human.gp human.stats idenity.bla methods pb.gf pombe.gf tm.pri wag55 wag65 wag75 wag85 wise.2 wise.per worm.gf /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/wise2
+ popd
~/build/BUILD/wise2.4.1
+ mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/wise2/examples
+ pushd test_data
~/build/BUILD/wise2.4.1/test_data ~/build/BUILD/wise2.4.1
+ install -pm 644 HOX.HMM Q8NAN2.dna Q8NAN2.pep README alignwise.gen db.hmm dummy_hox.dna epo.genomic epo.pep fugu.gen fugu_human.pep hn_est.fa human.genomic jason.dna jason.pep keratin_intron.human keratin_intron.mouse pep.fa phased_roa1.pep road.pep rpo_fugu.gen rpo_h_f.anchor rpo_h_m.anchor rpo_h_r.anchor rpo_human.gen rpo_human.intron rpo_human.pep rpo_mouse.gen rpo_rat.gen rrm.HMM rua1.pep vav.dna vav_promoter.human vav_promoter.mouse xeno.cdna xeno.pep /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/wise2/examples
+ popd
~/build/BUILD/wise2.4.1
+ mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/etc/profile.d
+ echo 'export WISECONFIGDIR=/usr/share/wise2/'
+ echo 'setenv WISECONFIGDIR /usr/share/wise2/'
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 2.4.1-16.fc38 --unique-debug-suffix -2.4.1-16.fc38.ppc64le --unique-debug-src-base wise2-2.4.1-16.fc38.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/wise2.4.1
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/estwisedb
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/estwise
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/dnal
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/dba
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/genewise
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/genewisedb
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/promoterwise
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/pswdb
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/psw
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/scanwise
extracting debug info from /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/bin/scanwise_server
original debug info size: 15936kB, size after compression: 11136kB
/usr/bin/sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match.
23175 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/wise2-2.4.1-16.fc38.ppc64le/src/base/wisetime.dy is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/wise2-2.4.1-16.fc38.ppc64le/src/base/wiseoverlay.dy is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/wise2-2.4.1-16.fc38.ppc64le/src/base/wisememman.dy is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/wise2-2.4.1-16.fc38.ppc64le/src/base/wisefile.dy is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.trJxZi
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd wise2.4.1
+ export WISECONFIGDIR=/builddir/build/BUILD/wise2.4.1/wisecfg
+ WISECONFIGDIR=/builddir/build/BUILD/wise2.4.1/wisecfg
+ make -C src test
make: Entering directory '/builddir/build/BUILD/wise2.4.1/src'
cd test ; perl testman.pl -cf ../wisecfg < short.test
>>> Doing promoterwise promoterwise standard test
>>> Calling [../bin/promoterwise -silent pw.human pw.mouse > TEMP-PW]
>>> promoterwise ... Failed
>>> Doing basic-cdna cdna test case (protein v cdna), all outputs
>>> Calling [../bin/estwise short.pep short.dna -indel 1e-5 -subs 1e-5 -pretty -para -sum -alb -pal -silent -alg 333 > TEMP]
>>> basic-cdna ... Failed
>>> Doing basic-genomic genomic test case (protein v genomic), all outputs
>>> Calling [../bin/genewise short.pep short.dna -pretty -para -genes -sum -cdna -trans -ace -gener -alb -pal -quiet -dymem linear > TEMP]
Warning Error
Strangely truncated line in fasta file
Warning Error
Strangely truncated line in fasta file
Warning Error
Attempting to access CompMat with aminoacid numbers 190:0 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:1 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:2 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:3 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:4 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:5 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:6 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:7 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:8 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:9 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:10 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:11 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:12 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:13 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:14 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:15 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:16 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:17 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:18 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:19 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:20 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:21 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:22 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:23 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:24 (they must
be bound between 0:26, returning 0 here
Warning Error
Attempting to access CompMat with aminoacid numbers 190:25 (they must
be bound between 0:26, returning 0 here
>>> basic-genomic ... Failed
>>> Doing hmm-binary-cdna cdna test case (protein v cdna), all outputs
>>> Calling [../bin/estwise HMM.binary -indel 1e-5 -subs 1e-5 -hmmer short.dna -pretty -para -sum -alb -pal -quiet -alg 333L > TEMP]
Warning Error
Strangely truncated line in fasta file
>>> hmm-binary-cdna ... Failed
>>> Doing hmm-wrong-dna HMMs vs DNA sequence when there is no match
>>> Calling [../bin/genewise wrong.hmm -hmmer short.dna -alg 623 -pal > TEMP]
Warning Error
Strangely truncated line in fasta file
Information
In making HSHNCPA1 a genomic sequence, converted 3 bases (0.7%) to
N's from non ATGCN
GeneWise6 Matrix calculation: [ 0] Cells 0%[ 1000] Cells 3%[ 2000] Cells 6%[ 3000] Cells 9%[ 4000] Cells 12%[ 5000] Cells 15%[ 6000] Cells 18%[ 7000] Cells 21%[ 8000] Cells 24%[ 9000] Cells 27%[ 10000] Cells 30%[ 11000] Cells 33%[ 12000] Cells 36%[ 13000] Cells 39%[ 14000] Cells 42%[ 15000] Cells 45%[ 16000] Cells 48%[ 17000] Cells 51%[ 18000] Cells 54%[ 19000] Cells 57%[ 20000] Cells 60%[ 21000] Cells 63%[ 22000] Cells 66%[ 23000] Cells 69%[ 24000] Cells 73%[ 25000] Cells 76%[ 26000] Cells 79%[ 27000] Cells 82%[ 28000] Cells 85%[ 29000] Cells 88%[ 30000] Cells 91%[ 31000] Cells 94%[ 32000] Cells 97%
>>> hmm-wrong-dna ... Passed
>>> Doing hmm-wrong-dna-est HMMs vs DNA sequence when there is no match
>>> Calling [../bin/estwise wrong.hmm -hmmer short.dna -alg 333 -pal > TEMP]
Warning Error
Strangely truncated line in fasta file
Information
In making HSHNCPA1 a cdna sequence, converted 3 bases (0.7%) to N's
from non ATGCN
EstWise3 Matrix calculation: [ 0] Cells 0%[ 1000] Cells 3%[ 2000] Cells 6%[ 3000] Cells 9%[ 4000] Cells 12%[ 5000] Cells 15%[ 6000] Cells 18%[ 7000] Cells 21%[ 8000] Cells 24%[ 9000] Cells 27%[ 10000] Cells 30%[ 11000] Cells 33%[ 12000] Cells 36%[ 13000] Cells 39%[ 14000] Cells 42%[ 15000] Cells 45%[ 16000] Cells 48%[ 17000] Cells 51%[ 18000] Cells 54%[ 19000] Cells 57%[ 20000] Cells 60%[ 21000] Cells 63%[ 22000] Cells 66%[ 23000] Cells 69%[ 24000] Cells 73%[ 25000] Cells 76%[ 26000] Cells 79%[ 27000] Cells 82%[ 28000] Cells 85%[ 29000] Cells 88%[ 30000] Cells 91%[ 31000] Cells 94%[ 32000] Cells 97%
EstWise3 Matrix calculation: [ 0] Cells 0%[ 1000] Cells 3%[ 2000] Cells 6%[ 3000] Cells 9%[ 4000] Cells 12%[ 5000] Cells 15%[ 6000] Cells 18%[ 7000] Cells 21%[ 8000] Cells 24%[ 9000] Cells 27%[ 10000] Cells 30%[ 11000] Cells 33%[ 12000] Cells 36%[ 13000] Cells 39%[ 14000] Cells 42%[ 15000] Cells 45%[ 16000] Cells 48%[ 17000] Cells 51%[ 18000] Cells 54%[ 19000] Cells 57%[ 20000] Cells 60%[ 21000] Cells 63%[ 22000] Cells 66%[ 23000] Cells 69%[ 24000] Cells 73%[ 25000] Cells 76%[ 26000] Cells 79%[ 27000] Cells 82%[ 28000] Cells 85%[ 29000] Cells 88%[ 30000] Cells 91%[ 31000] Cells 94%[ 32000] Cells 97%
>>> hmm-wrong-dna-est ... Failed
>>> Doing hmm-ascii-genomic cdna test case (protein v cdna), all outputs
>>> Calling [../bin/genewise -init local HMM.ascii -hmmer short.dna -pretty -para -genes -sum -cdna -trans -ace -gener -alb -pal -quiet > TEMP]
Warning Error
Strangely truncated line in fasta file
FATAL: No support for non-protein, non-nucleic acid alphabets.
>>> Bad exit status - 256 (system - )
>>> hmm-ascii-genomic ... Failed
>>> Doing genewise-db genewisedb hmm vs DNA sequences. Could take a while
>>> Calling [../bin/genewisedb rrm.HMM -hmmer dna.db -pretty -para -gener -genes -cdna -trans -ace -quiet -init global > TEMP]
Warning Error
DB searching: just finished [Query Pos: 0] [Target Pos: 5]
Strangely truncated line in fasta file
Warning Error
Strangely truncated line in fasta file
>>> genewise-db ... Passed
>>> Doing genewise-db-lite genewisedb hmm vs DNA sequences, using GWLITE. Could take a while
>>> Calling [../bin/genewisedb rrm.HMM -hmmer dna.db -pretty -para -gener -genes -cdna -trans -ace -quiet -init global -alg 6LITE > TEMP]
Warning Error
DB searching: just finished [Query Pos: 0] [Target Pos: 5]
Strangely truncated line in fasta file
Warning Error
Strangely truncated line in fasta file
>>> genewise-db-lite ... Passed
>>> Doing estwise-db estwisedb hmm vs DNA sequences. Could take a while
>>> Calling [../bin/estwisedb -init local rrm.HMM -hmmer dna.db -pretty -para -alb -quiet -alg 333 -aalg 333 > TEMP]
Warning Error
DB searching: just finished [Query Pos: 0] [Target Pos: 5]
Strangely truncated line in fasta file
Warning Error
Strangely truncated line in fasta file
>>> estwise-db ... Passed
>>> Doing pswdb Protein smith waterman db search
>>> Calling [../bin/pswdb road.pep pep.fa -quiet > TEMP ]
Warning Error
Strangely truncated line in fasta file
Warning Error
DB searching: just finished [Query Pos: 0] [Target Pos: 1]
Strangely truncated line in fasta file
Warning Error
Strangely truncated line in fasta file
>>> pswdb ... Failed
>>> Doing genewisedb-pfam-mode genewisedb designed for Pfam searching
>>> Calling [../bin/genewisedb -pfam rrm.HMM -dnas short.dna -pretty -para -alb -quiet -alg 623 -aalg 623L > TEMP]
Warning Error
Strangely truncated line in fasta file
>>> genewisedb-pfam-mode ... Failed
Tests failed
PLEASE: email ewan birney (birney@sanger.ac.uk) with the test.results file
make: Leaving directory '/builddir/build/BUILD/wise2.4.1/src'
+ RPM_EC=0
++ jobs -p
Processing files: wise2-2.4.1-16.fc38.ppc64le
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.R6hTSF
+ umask 022
+ cd /builddir/build/BUILD
+ cd wise2.4.1
+ DOCDIR=/builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2
+ cp -pr README /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.s8PPsX
+ umask 022
+ cd /builddir/build/BUILD
+ cd wise2.4.1
+ LICENSEDIR=/builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ cp -pr LICENSE /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ cp -pr LICENSE.base /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ cp -pr LICENSE.dynlibsrc /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ cp -pr LICENSE.dyc /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ cp -pr LICENSE.GPL /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: config(wise2) = 2.4.1-16.fc38 wise2 = 2.4.1-16.fc38 wise2(ppc-64) = 2.4.1-16.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libglib-2.0.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.29)(64bit) rtld(GNU_HASH)
Processing files: wise2-doc-2.4.1-16.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.mekTzN
+ umask 022
+ cd /builddir/build/BUILD
+ cd wise2.4.1
+ DOCDIR=/builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2-doc
+ cp -pr docs /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XvSQza
+ umask 022
+ cd /builddir/build/BUILD
+ cd wise2.4.1
+ LICENSEDIR=/builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2-doc
+ cp -pr LICENSE /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/licenses/wise2-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: wise2-doc = 2.4.1-16.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: wise2-examples-2.4.1-16.fc38.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.rEa5Uz
+ umask 022
+ cd /builddir/build/BUILD
+ cd wise2.4.1
+ DOCDIR=/builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2-examples
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2-examples
+ cp -pr test_data/README /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le/usr/share/doc/wise2-examples
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: wise2-examples = 2.4.1-16.fc38 wise2-examples(ppc-64) = 2.4.1-16.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: wise2-debugsource-2.4.1-16.fc38.ppc64le
Provides: wise2-debugsource = 2.4.1-16.fc38 wise2-debugsource(ppc-64) = 2.4.1-16.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: wise2-debuginfo-2.4.1-16.fc38.ppc64le
Provides: debuginfo(build-id) = 0cd273317dcc5e818d16d3d2802d8d4c685d35f2 debuginfo(build-id) = 38ef6c7915fb1eac6ce10a64faec9fcc40d39f2b debuginfo(build-id) = 3d9d9626f3ae98d41eb666a9b9b67d8871fe20f1 debuginfo(build-id) = 486da0c1dcb7116ff152849c8962b81c8cd61c60 debuginfo(build-id) = 4ef04bcea7b76becd5d1725e99a34383be77d11e debuginfo(build-id) = 6644594f0c6d2e60b5edbe091823274afc3ed772 debuginfo(build-id) = 67a9ab014cd4417d144c39964de15a194fb2a631 debuginfo(build-id) = 682d89e66b66b3c8effed77b63b3c77bf513e505 debuginfo(build-id) = 7010e249058815b9842d1c9f4b33f6a7458bb50d debuginfo(build-id) = c7bc1814ebe5ebb9fa581f5db81f704123c5ec48 debuginfo(build-id) = fcad9281709032626db20d2320b53db0ed936a3e wise2-debuginfo = 2.4.1-16.fc38 wise2-debuginfo(ppc-64) = 2.4.1-16.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: wise2-debugsource(ppc-64) = 2.4.1-16.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le
Wrote: /builddir/build/RPMS/wise2-doc-2.4.1-16.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/wise2-examples-2.4.1-16.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/wise2-2.4.1-16.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/wise2-debuginfo-2.4.1-16.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/wise2-debugsource-2.4.1-16.fc38.ppc64le.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Dh6oPv
+ umask 022
+ cd /builddir/build/BUILD
+ cd wise2.4.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/wise2-2.4.1-16.fc38.ppc64le
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qxQzK6
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf wise2.4.1 wise2.4.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild wise2-2.4.1-16.fc38.src.rpm
Finish: build phase for wise2-2.4.1-16.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1672363888.896173/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/wise2-2.4.1-16.fc38.src.rpm) Config(child) 4 minutes 18 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool