Warning: Permanently added '54.173.146.90' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5167502 --chroot fedora-rawhide-i386 --detached
Version: 0.62
PID: 27085
Logging PID: 27086
Task:
{'appstream': False,
'background': True,
'build_id': 5167502,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-i386',
'enable_net': False,
'fedora_review': False,
'git_hash': '4776c49620ade6df4499869259d2e2cdeef88c54',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/R-Biostrings',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'R-Biostrings',
'package_version': '2.64.1-1',
'project_dirname': 'gcc-13-test',
'project_name': 'gcc-13-test',
'project_owner': 'jakub',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-i386/',
'id': 'copr_base',
'name': 'Copr repository'},
{'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
'sandbox': 'jakub/gcc-13-test--jakub',
'source_json': {},
'source_type': None,
'submitter': 'jakub',
'tags': [],
'task_id': '5167502-fedora-rawhide-i386',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/R-Biostrings /var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/R-Biostrings', '/var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings'...
Running: git checkout 4776c49620ade6df4499869259d2e2cdeef88c54
cmd: ['git', 'checkout', '4776c49620ade6df4499869259d2e2cdeef88c54']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings
rc: 0
stdout:
stderr: Note: switching to '4776c49620ade6df4499869259d2e2cdeef88c54'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 4776c49 automatic import of R-Biostrings
Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading Biostrings_2.64.1.tar.gz
INFO: Calling: curl -H Pragma: -o Biostrings_2.64.1.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/R-Biostrings/Biostrings_2.64.1.tar.gz/md5/71a78d5b184e315b7d4565f783f35d6e/Biostrings_2.64.1.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 11.8M 100 11.8M 0 0 30.8M 0 --:--:-- --:--:-- --:--:-- 30.9M
INFO: Reading stdout from command: md5sum Biostrings_2.64.1.tar.gz
Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671756994.049510 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings/R-Biostrings.spec) Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671756994.049510/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 12 MB/s | 1.1 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 500 kB/s | 86 kB 00:00
local 83 MB/s | 60 MB 00:00
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing:
dnf noarch 4.14.0-1.fc38 local 469 k
dnf-plugins-core noarch 4.3.1-1.fc38 local 34 k
Installing dependencies:
alternatives i686 1.21-1.fc38 local 38 k
audit-libs i686 3.0.9-2.fc38 local 122 k
basesystem noarch 11-14.fc37 local 7.0 k
bash i686 5.2.9-3.fc38 local 1.8 M
bzip2-libs i686 1.0.8-12.fc37 local 41 k
ca-certificates noarch 2022.2.54-5.fc37 local 829 k
coreutils i686 9.1-8.fc38 local 1.1 M
coreutils-common i686 9.1-8.fc38 local 2.0 M
crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k
curl i686 7.87.0-1.fc38 local 347 k
cyrus-sasl-lib i686 2.1.28-8.fc38 local 857 k
dbus-libs i686 1:1.14.4-1.fc38 local 167 k
dnf-data noarch 4.14.0-1.fc38 local 43 k
elfutils-default-yama-scope noarch 0.188-3.fc38 local 15 k
elfutils-libelf i686 0.188-3.fc38 local 203 k
elfutils-libs i686 0.188-3.fc38 local 286 k
expat i686 2.5.0-1.fc38 local 115 k
fedora-gpg-keys noarch 38-0.3 local 115 k
fedora-release noarch 38-0.6 local 11 k
fedora-release-common noarch 38-0.6 local 21 k
fedora-release-identity-basic noarch 38-0.6 local 11 k
fedora-repos noarch 38-0.3 local 10 k
fedora-repos-rawhide noarch 38-0.3 local 9.7 k
file-libs i686 5.42-4.fc37 local 684 k
filesystem i686 3.18-2.fc37 local 1.1 M
findutils i686 1:4.9.0-2.fc37 local 492 k
gawk i686 5.1.1-4.fc37 local 1.0 M
gdbm-libs i686 1:1.23-2.fc37 local 60 k
glib2 i686 2.74.1-2.fc38 local 2.8 M
glibc i686 2.36.9000-18.fc38 local 1.9 M
glibc-common i686 2.36.9000-18.fc38 local 315 k
glibc-minimal-langpack i686 2.36.9000-18.fc38 local 30 k
gmp i686 1:6.2.1-3.fc37 local 305 k
gnupg2 i686 2.3.8-1.fc38 local 2.6 M
gnutls i686 3.7.8-9.fc38 local 1.1 M
gpgme i686 1.17.1-3.fc38 local 218 k
grep i686 3.8-1.fc38 local 289 k
ima-evm-utils i686 1.4-6.fc37 local 63 k
json-c i686 0.16-3.fc38 local 44 k
keyutils-libs i686 1.6.1-5.fc37 local 32 k
krb5-libs i686 1.20.1-3.fc38 local 763 k
libacl i686 2.3.1-4.fc37 local 25 k
libarchive i686 3.6.1-3.fc38 local 443 k
libassuan i686 2.5.5-5.fc37 local 69 k
libattr i686 2.5.1-5.fc37 local 18 k
libb2 i686 0.98.1-7.fc37 local 35 k
libblkid i686 2.38.1-3.fc38 local 116 k
libbrotli i686 1.0.9-9.fc37 local 317 k
libcap i686 2.48-5.fc37 local 68 k
libcap-ng i686 0.8.3-4.fc38 local 33 k
libcom_err i686 1.46.5-3.fc37 local 26 k
libcomps i686 0.1.18-4.fc37 local 84 k
libcurl i686 7.87.0-1.fc38 local 327 k
libdnf i686 0.68.0-1.fc38 local 722 k
libevent i686 2.1.12-7.fc37 local 279 k
libffi i686 3.4.4-1.fc38 local 36 k
libfsverity i686 1.4-8.fc37 local 20 k
libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k
libgcrypt i686 1.10.1-6.fc38 local 484 k
libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k
libgpg-error i686 1.46-1.fc38 local 225 k
libidn2 i686 2.3.4-1.fc38 local 154 k
libksba i686 1.6.3-1.fc38 local 161 k
libmodulemd i686 2.14.0-4.fc37 local 241 k
libmount i686 2.38.1-3.fc38 local 141 k
libnghttp2 i686 1.51.0-1.fc38 local 80 k
libnsl2 i686 2.0.0-4.fc37 local 31 k
libpsl i686 0.21.1-6.fc37 local 64 k
librepo i686 1.15.1-1.fc38 local 102 k
libreport-filesystem noarch 2.17.6-1.fc38 local 14 k
libselinux i686 3.4-6.fc38 local 91 k
libsemanage i686 3.4-6.fc38 local 128 k
libsepol i686 3.4-4.fc38 local 336 k
libsigsegv i686 2.14-3.fc37 local 27 k
libsmartcols i686 2.38.1-3.fc38 local 65 k
libsolv i686 0.7.22-3.fc37 local 428 k
libssh i686 0.10.4-2.fc38 local 222 k
libssh-config noarch 0.10.4-2.fc38 local 8.8 k
libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k
libtasn1 i686 4.19.0-1.fc38 local 76 k
libtirpc i686 1.3.3-0.fc37 local 101 k
libunistring i686 1.0-2.fc37 local 551 k
libuuid i686 2.38.1-3.fc38 local 28 k
libverto i686 0.3.2-4.fc37 local 21 k
libxcrypt i686 4.4.33-5.fc38 local 123 k
libxml2 i686 2.10.3-2.fc38 local 745 k
libyaml i686 0.2.5-8.fc37 local 62 k
libzstd i686 1.5.2-3.fc37 local 274 k
lua-libs i686 5.4.4-6.fc38 local 148 k
lz4-libs i686 1.9.3-5.fc37 local 72 k
mpdecimal i686 2.5.1-4.fc37 local 106 k
mpfr i686 4.1.1-2.fc38 local 637 k
ncurses-base noarch 6.3-5.20221126.fc38 local 61 k
ncurses-libs i686 6.3-5.20221126.fc38 local 348 k
nettle i686 3.8-2.fc37 local 430 k
npth i686 1.6-10.fc38 local 24 k
openldap i686 2.6.3-1.fc38 local 273 k
openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M
p11-kit i686 0.24.1-5.fc38 local 335 k
p11-kit-trust i686 0.24.1-5.fc38 local 135 k
pcre2 i686 10.40-1.fc37.1 local 234 k
pcre2-syntax noarch 10.40-1.fc37.1 local 142 k
popt i686 1.19-1.fc38 local 61 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k
python-pip-wheel noarch 22.3.1-1.fc38 local 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 local 715 k
python3 i686 3.11.1-1.fc38 local 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 local 350 k
python3-dbus i686 1.3.2-1.fc38 local 150 k
python3-distro noarch 1.8.0-1.fc38 local 45 k
python3-dnf noarch 4.14.0-1.fc38 local 567 k
python3-dnf-plugins-core noarch 4.3.1-1.fc38 local 263 k
python3-gpg i686 1.17.1-3.fc38 local 277 k
python3-hawkey i686 0.68.0-1.fc38 local 111 k
python3-libcomps i686 0.1.18-4.fc37 local 51 k
python3-libdnf i686 0.68.0-1.fc38 local 828 k
python3-libs i686 3.11.1-1.fc38 local 9.3 M
python3-rpm i686 4.18.0-8.fc38 local 95 k
python3-six noarch 1.16.0-8.fc37 local 42 k
readline i686 8.2-2.fc38 local 218 k
rpm i686 4.18.0-8.fc38 local 543 k
rpm-build-libs i686 4.18.0-8.fc38 local 102 k
rpm-libs i686 4.18.0-8.fc38 local 341 k
rpm-sequoia i686 1.2.0-1.fc38 local 924 k
rpm-sign-libs i686 4.18.0-8.fc38 local 27 k
sed i686 4.8-11.fc37 local 300 k
setup noarch 2.14.3-1.fc38 local 146 k
shadow-utils i686 2:4.13-3.fc38 local 1.2 M
sqlite-libs i686 3.40.0-1.fc38 local 705 k
systemd-libs i686 252.4-598.fc38 local 662 k
tpm2-tss i686 4.0.0-0.1.rc2.fc38 local 603 k
tzdata noarch 2022g-1.fc38 local 432 k
xz-libs i686 5.2.9-1.fc38 local 101 k
zchunk-libs i686 1.2.3-1.fc38 local 54 k
zlib i686 1.2.13-1.fc38 local 92 k
Transaction Summary
=========================================================================================================================
Install 137 Packages
Total download size: 57 M
Installed size: 199 M
Downloading Packages:
(1/137): libgomp-13.0.0-0.4.fc38.i686.rpm 2.0 MB/s | 304 kB 00:00
(2/137): libgcc-13.0.0-0.4.fc38.i686.rpm 596 kB/s | 101 kB 00:00
(3/137): alternatives-1.21-1.fc38.i686.rpm 875 kB/s | 38 kB 00:00
(4/137): basesystem-11-14.fc37.noarch.rpm 2.7 MB/s | 7.0 kB 00:00
(5/137): audit-libs-3.0.9-2.fc38.i686.rpm 3.2 MB/s | 122 kB 00:00
(6/137): bzip2-libs-1.0.8-12.fc37.i686.rpm 6.5 MB/s | 41 kB 00:00
(7/137): libstdc++-13.0.0-0.4.fc38.i686.rpm 3.8 MB/s | 857 kB 00:00
(8/137): bash-5.2.9-3.fc38.i686.rpm 38 MB/s | 1.8 MB 00:00
(9/137): ca-certificates-2022.2.54-5.fc37.noarc 18 MB/s | 829 kB 00:00
(10/137): crypto-policies-20221215-1.gita4c31a3 9.9 MB/s | 63 kB 00:00
(11/137): curl-7.87.0-1.fc38.i686.rpm 33 MB/s | 347 kB 00:00
(12/137): coreutils-9.1-8.fc38.i686.rpm 19 MB/s | 1.1 MB 00:00
(13/137): coreutils-common-9.1-8.fc38.i686.rpm 47 MB/s | 2.0 MB 00:00
(14/137): dbus-libs-1.14.4-1.fc38.i686.rpm 16 MB/s | 167 kB 00:00
(15/137): cyrus-sasl-lib-2.1.28-8.fc38.i686.rpm 46 MB/s | 857 kB 00:00
(16/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 6.0 MB/s | 34 kB 00:00
(17/137): dnf-4.14.0-1.fc38.noarch.rpm 27 MB/s | 469 kB 00:00
(18/137): elfutils-default-yama-scope-0.188-3.f 3.9 MB/s | 15 kB 00:00
(19/137): dnf-data-4.14.0-1.fc38.noarch.rpm 3.3 MB/s | 43 kB 00:00
(20/137): expat-2.5.0-1.fc38.i686.rpm 27 MB/s | 115 kB 00:00
(21/137): elfutils-libelf-0.188-3.fc38.i686.rpm 28 MB/s | 203 kB 00:00
(22/137): elfutils-libs-0.188-3.fc38.i686.rpm 37 MB/s | 286 kB 00:00
(23/137): fedora-release-38-0.6.noarch.rpm 3.8 MB/s | 11 kB 00:00
(24/137): fedora-gpg-keys-38-0.3.noarch.rpm 22 MB/s | 115 kB 00:00
(25/137): fedora-release-common-38-0.6.noarch.r 6.4 MB/s | 21 kB 00:00
(26/137): fedora-release-identity-basic-38-0.6. 4.8 MB/s | 11 kB 00:00
(27/137): fedora-repos-38-0.3.noarch.rpm 3.6 MB/s | 10 kB 00:00
(28/137): fedora-repos-rawhide-38-0.3.noarch.rp 3.7 MB/s | 9.7 kB 00:00
(29/137): findutils-4.9.0-2.fc37.i686.rpm 46 MB/s | 492 kB 00:00
(30/137): file-libs-5.42-4.fc37.i686.rpm 46 MB/s | 684 kB 00:00
(31/137): gdbm-libs-1.23-2.fc37.i686.rpm 13 MB/s | 60 kB 00:00
(32/137): filesystem-3.18-2.fc37.i686.rpm 52 MB/s | 1.1 MB 00:00
(33/137): gawk-5.1.1-4.fc37.i686.rpm 50 MB/s | 1.0 MB 00:00
(34/137): glibc-common-2.36.9000-18.fc38.i686.r 31 MB/s | 315 kB 00:00
(35/137): glibc-minimal-langpack-2.36.9000-18.f 8.7 MB/s | 30 kB 00:00
(36/137): glibc-2.36.9000-18.fc38.i686.rpm 54 MB/s | 1.9 MB 00:00
(37/137): gmp-6.2.1-3.fc37.i686.rpm 27 MB/s | 305 kB 00:00
(38/137): glib2-2.74.1-2.fc38.i686.rpm 60 MB/s | 2.8 MB 00:00
(39/137): gnutls-3.7.8-9.fc38.i686.rpm 52 MB/s | 1.1 MB 00:00
(40/137): gpgme-1.17.1-3.fc38.i686.rpm 13 MB/s | 218 kB 00:00
(41/137): ima-evm-utils-1.4-6.fc37.i686.rpm 14 MB/s | 63 kB 00:00
(42/137): grep-3.8-1.fc38.i686.rpm 32 MB/s | 289 kB 00:00
(43/137): json-c-0.16-3.fc38.i686.rpm 13 MB/s | 44 kB 00:00
(44/137): keyutils-libs-1.6.1-5.fc37.i686.rpm 9.5 MB/s | 32 kB 00:00
(45/137): libacl-2.3.1-4.fc37.i686.rpm 7.1 MB/s | 25 kB 00:00
(46/137): gnupg2-2.3.8-1.fc38.i686.rpm 61 MB/s | 2.6 MB 00:00
(47/137): libassuan-2.5.5-5.fc37.i686.rpm 14 MB/s | 69 kB 00:00
(48/137): libarchive-3.6.1-3.fc38.i686.rpm 40 MB/s | 443 kB 00:00
(49/137): krb5-libs-1.20.1-3.fc38.i686.rpm 44 MB/s | 763 kB 00:00
(50/137): libattr-2.5.1-5.fc37.i686.rpm 5.7 MB/s | 18 kB 00:00
(51/137): libb2-0.98.1-7.fc37.i686.rpm 7.2 MB/s | 35 kB 00:00
(52/137): libblkid-2.38.1-3.fc38.i686.rpm 18 MB/s | 116 kB 00:00
(53/137): libbrotli-1.0.9-9.fc37.i686.rpm 43 MB/s | 317 kB 00:00
(54/137): libcap-2.48-5.fc37.i686.rpm 13 MB/s | 68 kB 00:00
(55/137): libcap-ng-0.8.3-4.fc38.i686.rpm 9.4 MB/s | 33 kB 00:00
(56/137): libcom_err-1.46.5-3.fc37.i686.rpm 8.9 MB/s | 26 kB 00:00
(57/137): libcomps-0.1.18-4.fc37.i686.rpm 24 MB/s | 84 kB 00:00
(58/137): libcurl-7.87.0-1.fc38.i686.rpm 33 MB/s | 327 kB 00:00
(59/137): libevent-2.1.12-7.fc37.i686.rpm 26 MB/s | 279 kB 00:00
(60/137): libdnf-0.68.0-1.fc38.i686.rpm 53 MB/s | 722 kB 00:00
(61/137): libffi-3.4.4-1.fc38.i686.rpm 8.2 MB/s | 36 kB 00:00
(62/137): libfsverity-1.4-8.fc37.i686.rpm 4.7 MB/s | 20 kB 00:00
(63/137): libgpg-error-1.46-1.fc38.i686.rpm 40 MB/s | 225 kB 00:00
(64/137): libgcrypt-1.10.1-6.fc38.i686.rpm 52 MB/s | 484 kB 00:00
(65/137): libidn2-2.3.4-1.fc38.i686.rpm 22 MB/s | 154 kB 00:00
(66/137): libksba-1.6.3-1.fc38.i686.rpm 30 MB/s | 161 kB 00:00
(67/137): libmount-2.38.1-3.fc38.i686.rpm 28 MB/s | 141 kB 00:00
(68/137): libmodulemd-2.14.0-4.fc37.i686.rpm 35 MB/s | 241 kB 00:00
(69/137): libnghttp2-1.51.0-1.fc38.i686.rpm 15 MB/s | 80 kB 00:00
(70/137): libnsl2-2.0.0-4.fc37.i686.rpm 10 MB/s | 31 kB 00:00
(71/137): librepo-1.15.1-1.fc38.i686.rpm 29 MB/s | 102 kB 00:00
(72/137): libpsl-0.21.1-6.fc37.i686.rpm 12 MB/s | 64 kB 00:00
(73/137): libreport-filesystem-2.17.6-1.fc38.no 4.2 MB/s | 14 kB 00:00
(74/137): libselinux-3.4-6.fc38.i686.rpm 23 MB/s | 91 kB 00:00
(75/137): libsemanage-3.4-6.fc38.i686.rpm 25 MB/s | 128 kB 00:00
(76/137): libsigsegv-2.14-3.fc37.i686.rpm 8.2 MB/s | 27 kB 00:00
(77/137): libsmartcols-2.38.1-3.fc38.i686.rpm 19 MB/s | 65 kB 00:00
(78/137): libssh-0.10.4-2.fc38.i686.rpm 31 MB/s | 222 kB 00:00
(79/137): libsolv-0.7.22-3.fc37.i686.rpm 41 MB/s | 428 kB 00:00
(80/137): libsepol-3.4-4.fc38.i686.rpm 19 MB/s | 336 kB 00:00
(81/137): libssh-config-0.10.4-2.fc38.noarch.rp 3.8 MB/s | 8.8 kB 00:00
(82/137): libtasn1-4.19.0-1.fc38.i686.rpm 19 MB/s | 76 kB 00:00
(83/137): libuuid-2.38.1-3.fc38.i686.rpm 8.4 MB/s | 28 kB 00:00
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(89/137): libzstd-1.5.2-3.fc37.i686.rpm 38 MB/s | 274 kB 00:00
(90/137): lua-libs-5.4.4-6.fc38.i686.rpm 23 MB/s | 148 kB 00:00
(91/137): libxml2-2.10.3-2.fc38.i686.rpm 49 MB/s | 745 kB 00:00
(92/137): lz4-libs-1.9.3-5.fc37.i686.rpm 20 MB/s | 72 kB 00:00
(93/137): mpdecimal-2.5.1-4.fc37.i686.rpm 25 MB/s | 106 kB 00:00
(94/137): ncurses-base-6.3-5.20221126.fc38.noar 13 MB/s | 61 kB 00:00
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(96/137): ncurses-libs-6.3-5.20221126.fc38.i686 34 MB/s | 348 kB 00:00
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(103/137): pcre2-syntax-10.40-1.fc37.1.noarch.r 28 MB/s | 142 kB 00:00
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(105/137): publicsuffix-list-dafsa-20221208-1.f 17 MB/s | 59 kB 00:00
(106/137): python-setuptools-wheel-65.5.1-1.fc3 54 MB/s | 715 kB 00:00
(107/137): openssl-libs-3.0.5-6.fc38.i686.rpm 48 MB/s | 2.1 MB 00:00
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(112/137): python3-dateutil-2.8.2-4.fc37.noarch 37 MB/s | 350 kB 00:00
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(116/137): python3-hawkey-0.68.0-1.fc38.i686.rp 21 MB/s | 111 kB 00:00
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(119/137): python3-six-1.16.0-8.fc37.noarch.rpm 8.1 MB/s | 42 kB 00:00
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(129/137): sqlite-libs-3.40.0-1.fc38.i686.rpm 50 MB/s | 705 kB 00:00
(130/137): shadow-utils-4.13-3.fc38.i686.rpm 46 MB/s | 1.2 MB 00:00
(131/137): systemd-libs-252.4-598.fc38.i686.rpm 42 MB/s | 662 kB 00:00
(132/137): tpm2-tss-4.0.0-0.1.rc2.fc38.i686.rpm 46 MB/s | 603 kB 00:00
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(137/137): python3-libs-3.11.1-1.fc38.i686.rpm 77 MB/s | 9.3 MB 00:00
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Total 77 MB/s | 57 MB 00:00
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Verifying : libssh-0.10.4-2.fc38.i686 80/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 81/137
Verifying : libtasn1-4.19.0-1.fc38.i686 82/137
Verifying : libtirpc-1.3.3-0.fc37.i686 83/137
Verifying : libunistring-1.0-2.fc37.i686 84/137
Verifying : libuuid-2.38.1-3.fc38.i686 85/137
Verifying : libverto-0.3.2-4.fc37.i686 86/137
Verifying : libxcrypt-4.4.33-5.fc38.i686 87/137
Verifying : libxml2-2.10.3-2.fc38.i686 88/137
Verifying : libyaml-0.2.5-8.fc37.i686 89/137
Verifying : libzstd-1.5.2-3.fc37.i686 90/137
Verifying : lua-libs-5.4.4-6.fc38.i686 91/137
Verifying : lz4-libs-1.9.3-5.fc37.i686 92/137
Verifying : mpdecimal-2.5.1-4.fc37.i686 93/137
Verifying : mpfr-4.1.1-2.fc38.i686 94/137
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 95/137
Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 96/137
Verifying : nettle-3.8-2.fc37.i686 97/137
Verifying : npth-1.6-10.fc38.i686 98/137
Verifying : openldap-2.6.3-1.fc38.i686 99/137
Verifying : openssl-libs-1:3.0.5-6.fc38.i686 100/137
Verifying : p11-kit-0.24.1-5.fc38.i686 101/137
Verifying : p11-kit-trust-0.24.1-5.fc38.i686 102/137
Verifying : pcre2-10.40-1.fc37.1.i686 103/137
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 104/137
Verifying : popt-1.19-1.fc38.i686 105/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 106/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 107/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 108/137
Verifying : python3-3.11.1-1.fc38.i686 109/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 110/137
Verifying : python3-dbus-1.3.2-1.fc38.i686 111/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 112/137
Verifying : python3-dnf-4.14.0-1.fc38.noarch 113/137
Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 114/137
Verifying : python3-gpg-1.17.1-3.fc38.i686 115/137
Verifying : python3-hawkey-0.68.0-1.fc38.i686 116/137
Verifying : python3-libcomps-0.1.18-4.fc37.i686 117/137
Verifying : python3-libdnf-0.68.0-1.fc38.i686 118/137
Verifying : python3-libs-3.11.1-1.fc38.i686 119/137
Verifying : python3-rpm-4.18.0-8.fc38.i686 120/137
Verifying : python3-six-1.16.0-8.fc37.noarch 121/137
Verifying : readline-8.2-2.fc38.i686 122/137
Verifying : rpm-4.18.0-8.fc38.i686 123/137
Verifying : rpm-build-libs-4.18.0-8.fc38.i686 124/137
Verifying : rpm-libs-4.18.0-8.fc38.i686 125/137
Verifying : rpm-sequoia-1.2.0-1.fc38.i686 126/137
Verifying : rpm-sign-libs-4.18.0-8.fc38.i686 127/137
Verifying : sed-4.8-11.fc37.i686 128/137
Verifying : setup-2.14.3-1.fc38.noarch 129/137
Verifying : shadow-utils-2:4.13-3.fc38.i686 130/137
Verifying : sqlite-libs-3.40.0-1.fc38.i686 131/137
Verifying : systemd-libs-252.4-598.fc38.i686 132/137
Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.i686 133/137
Verifying : tzdata-2022g-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.i686 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.i686 136/137
Verifying : zlib-1.2.13-1.fc38.i686 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.i686
audit-libs-3.0.9-2.fc38.i686
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.i686
bzip2-libs-1.0.8-12.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
dbus-libs-1:1.14.4-1.fc38.i686
dnf-4.14.0-1.fc38.noarch
dnf-data-4.14.0-1.fc38.noarch
dnf-plugins-core-4.3.1-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.i686
elfutils-libs-0.188-3.fc38.i686
expat-2.5.0-1.fc38.i686
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-4.fc37.i686
filesystem-3.18-2.fc37.i686
findutils-1:4.9.0-2.fc37.i686
gawk-5.1.1-4.fc37.i686
gdbm-libs-1:1.23-2.fc37.i686
glib2-2.74.1-2.fc38.i686
glibc-2.36.9000-18.fc38.i686
glibc-common-2.36.9000-18.fc38.i686
glibc-minimal-langpack-2.36.9000-18.fc38.i686
gmp-1:6.2.1-3.fc37.i686
gnupg2-2.3.8-1.fc38.i686
gnutls-3.7.8-9.fc38.i686
gpgme-1.17.1-3.fc38.i686
grep-3.8-1.fc38.i686
ima-evm-utils-1.4-6.fc37.i686
json-c-0.16-3.fc38.i686
keyutils-libs-1.6.1-5.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
libacl-2.3.1-4.fc37.i686
libarchive-3.6.1-3.fc38.i686
libassuan-2.5.5-5.fc37.i686
libattr-2.5.1-5.fc37.i686
libb2-0.98.1-7.fc37.i686
libblkid-2.38.1-3.fc38.i686
libbrotli-1.0.9-9.fc37.i686
libcap-2.48-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libcomps-0.1.18-4.fc37.i686
libcurl-7.87.0-1.fc38.i686
libdnf-0.68.0-1.fc38.i686
libevent-2.1.12-7.fc37.i686
libffi-3.4.4-1.fc38.i686
libfsverity-1.4-8.fc37.i686
libgcc-13.0.0-0.4.fc38.i686
libgcrypt-1.10.1-6.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
libgpg-error-1.46-1.fc38.i686
libidn2-2.3.4-1.fc38.i686
libksba-1.6.3-1.fc38.i686
libmodulemd-2.14.0-4.fc37.i686
libmount-2.38.1-3.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libpsl-0.21.1-6.fc37.i686
librepo-1.15.1-1.fc38.i686
libreport-filesystem-2.17.6-1.fc38.noarch
libselinux-3.4-6.fc38.i686
libsemanage-3.4-6.fc38.i686
libsepol-3.4-4.fc38.i686
libsigsegv-2.14-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
libsolv-0.7.22-3.fc37.i686
libssh-0.10.4-2.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libunistring-1.0-2.fc37.i686
libuuid-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
libxml2-2.10.3-2.fc38.i686
libyaml-0.2.5-8.fc37.i686
libzstd-1.5.2-3.fc37.i686
lua-libs-5.4.4-6.fc38.i686
lz4-libs-1.9.3-5.fc37.i686
mpdecimal-2.5.1-4.fc37.i686
mpfr-4.1.1-2.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
nettle-3.8-2.fc37.i686
npth-1.6-10.fc38.i686
openldap-2.6.3-1.fc38.i686
openssl-libs-1:3.0.5-6.fc38.i686
p11-kit-0.24.1-5.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
popt-1.19-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-1.fc38.i686
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-1.fc38.i686
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-1.fc38.noarch
python3-dnf-plugins-core-4.3.1-1.fc38.noarch
python3-gpg-1.17.1-3.fc38.i686
python3-hawkey-0.68.0-1.fc38.i686
python3-libcomps-0.1.18-4.fc37.i686
python3-libdnf-0.68.0-1.fc38.i686
python3-libs-3.11.1-1.fc38.i686
python3-rpm-4.18.0-8.fc38.i686
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.i686
rpm-4.18.0-8.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
rpm-sign-libs-4.18.0-8.fc38.i686
sed-4.8-11.fc37.i686
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
tpm2-tss-4.0.0-0.1.rc2.fc38.i686
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.i686
zchunk-libs-1.2.3-1.fc38.i686
zlib-1.2.13-1.fc38.i686
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671756994.049510/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 12 kB/s | 3.0 kB 00:00
Copr repository 3.9 MB/s | 1.1 MB 00:00
Additional repo https_jakub_fedorapeople_org_fe 11 kB/s | 3.0 kB 00:00
local 16 kB/s | 3.8 kB 00:00
Dependencies resolved.
=========================================================================================================================
Package Arch Version Repository Size
=========================================================================================================================
Installing group/module packages:
bash i686 5.2.9-3.fc38 local 1.8 M
bzip2 i686 1.0.8-12.fc37 local 53 k
coreutils i686 9.1-8.fc38 local 1.1 M
cpio i686 2.13-13.fc38 local 275 k
diffutils i686 3.8-3.fc37 local 375 k
fedora-release noarch 38-0.6 local 11 k
findutils i686 1:4.9.0-2.fc37 local 492 k
gawk i686 5.1.1-4.fc37 local 1.0 M
glibc-minimal-langpack i686 2.36.9000-18.fc38 local 30 k
grep i686 3.8-1.fc38 local 289 k
gzip i686 1.12-2.fc37 local 157 k
info i686 7.0.1-1.fc38 local 183 k
patch i686 2.7.6-17.fc37 local 137 k
redhat-rpm-config noarch 235-1.fc38 local 74 k
rpm-build i686 4.18.0-8.fc38 local 69 k
sed i686 4.8-11.fc37 local 300 k
shadow-utils i686 2:4.13-3.fc38 local 1.2 M
tar i686 2:1.34-5.fc38 local 892 k
unzip i686 6.0-58.fc38 local 177 k
util-linux i686 2.38.1-3.fc38 local 2.3 M
which i686 2.21-36.fc38 local 42 k
xz i686 5.2.9-1.fc38 local 300 k
Installing dependencies:
alternatives i686 1.21-1.fc38 local 38 k
ansible-srpm-macros noarch 1-8.1.fc38 local 8.6 k
audit-libs i686 3.0.9-2.fc38 local 122 k
authselect i686 1.4.2-1.fc38 local 140 k
authselect-libs i686 1.4.2-1.fc38 local 238 k
basesystem noarch 11-14.fc37 local 7.0 k
binutils i686 2.39-6.fc38 local 5.6 M
binutils-gold i686 2.39-6.fc38 local 841 k
bzip2-libs i686 1.0.8-12.fc37 local 41 k
ca-certificates noarch 2022.2.54-5.fc37 local 829 k
coreutils-common i686 9.1-8.fc38 local 2.0 M
cracklib i686 2.9.7-30.fc38 local 81 k
crypto-policies noarch 20221215-1.gita4c31a3.fc38 local 63 k
curl i686 7.87.0-1.fc38 local 347 k
cyrus-sasl-lib i686 2.1.28-8.fc38 local 857 k
debugedit i686 5.0-5.fc37 local 78 k
dwz i686 0.15-1.fc38 local 144 k
ed i686 1.18-2.fc37 local 78 k
efi-srpm-macros noarch 5-6.fc37 local 22 k
elfutils i686 0.188-3.fc38 local 540 k
elfutils-debuginfod-client i686 0.188-3.fc38 local 41 k
elfutils-default-yama-scope noarch 0.188-3.fc38 local 15 k
elfutils-libelf i686 0.188-3.fc38 local 203 k
elfutils-libs i686 0.188-3.fc38 local 286 k
fedora-gpg-keys noarch 38-0.3 local 115 k
fedora-release-common noarch 38-0.6 local 21 k
fedora-release-identity-basic noarch 38-0.6 local 11 k
fedora-repos noarch 38-0.3 local 10 k
fedora-repos-rawhide noarch 38-0.3 local 9.7 k
file i686 5.42-4.fc37 local 49 k
file-libs i686 5.42-4.fc37 local 684 k
filesystem i686 3.18-2.fc37 local 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 local 26 k
fpc-srpm-macros noarch 1.3-6.fc37 local 7.7 k
gdb-minimal i686 12.1-10.fc38 local 3.9 M
gdbm-libs i686 1:1.23-2.fc37 local 60 k
ghc-srpm-macros noarch 1.5.0-7.fc37 local 7.8 k
glibc i686 2.36.9000-18.fc38 local 1.9 M
glibc-common i686 2.36.9000-18.fc38 local 315 k
glibc-gconv-extra i686 2.36.9000-18.fc38 local 1.6 M
gmp i686 1:6.2.1-3.fc37 local 305 k
gnat-srpm-macros noarch 4-16.fc37 local 8.3 k
go-srpm-macros noarch 3.2.0-1.fc38 local 27 k
jansson i686 2.13.1-5.fc37 local 46 k
kernel-srpm-macros noarch 1.0-15.fc37 local 9.4 k
keyutils-libs i686 1.6.1-5.fc37 local 32 k
krb5-libs i686 1.20.1-3.fc38 local 763 k
libacl i686 2.3.1-4.fc37 local 25 k
libarchive i686 3.6.1-3.fc38 local 443 k
libattr i686 2.5.1-5.fc37 local 18 k
libblkid i686 2.38.1-3.fc38 local 116 k
libbrotli i686 1.0.9-9.fc37 local 317 k
libcap i686 2.48-5.fc37 local 68 k
libcap-ng i686 0.8.3-4.fc38 local 33 k
libcom_err i686 1.46.5-3.fc37 local 26 k
libcurl i686 7.87.0-1.fc38 local 327 k
libdb i686 5.3.28-54.fc38 local 827 k
libeconf i686 0.4.0-4.fc37 local 29 k
libevent i686 2.1.12-7.fc37 local 279 k
libfdisk i686 2.38.1-3.fc38 local 173 k
libffi i686 3.4.4-1.fc38 local 36 k
libgcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 101 k
libgomp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 304 k
libidn2 i686 2.3.4-1.fc38 local 154 k
libmount i686 2.38.1-3.fc38 local 141 k
libnghttp2 i686 1.51.0-1.fc38 local 80 k
libnsl2 i686 2.0.0-4.fc37 local 31 k
libpkgconf i686 1.8.0-3.fc37 local 38 k
libpsl i686 0.21.1-6.fc37 local 64 k
libpwquality i686 1.4.4-11.fc37 local 106 k
libselinux i686 3.4-6.fc38 local 91 k
libsemanage i686 3.4-6.fc38 local 128 k
libsepol i686 3.4-4.fc38 local 336 k
libsigsegv i686 2.14-3.fc37 local 27 k
libsmartcols i686 2.38.1-3.fc38 local 65 k
libssh i686 0.10.4-2.fc38 local 222 k
libssh-config noarch 0.10.4-2.fc38 local 8.8 k
libstdc++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 857 k
libtasn1 i686 4.19.0-1.fc38 local 76 k
libtirpc i686 1.3.3-0.fc37 local 101 k
libunistring i686 1.0-2.fc37 local 551 k
libutempter i686 1.2.1-7.fc37 local 26 k
libuuid i686 2.38.1-3.fc38 local 28 k
libverto i686 0.3.2-4.fc37 local 21 k
libxcrypt i686 4.4.33-5.fc38 local 123 k
libxml2 i686 2.10.3-2.fc38 local 745 k
libzstd i686 1.5.2-3.fc37 local 274 k
lua-libs i686 5.4.4-6.fc38 local 148 k
lua-srpm-macros noarch 1-7.fc37 local 8.8 k
lz4-libs i686 1.9.3-5.fc37 local 72 k
mpfr i686 4.1.1-2.fc38 local 637 k
ncurses-base noarch 6.3-5.20221126.fc38 local 61 k
ncurses-libs i686 6.3-5.20221126.fc38 local 348 k
nettle i686 3.8-2.fc37 local 430 k
nim-srpm-macros noarch 3-7.fc37 local 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 local 13 k
openblas-srpm-macros noarch 2-12.fc37 local 7.5 k
openldap i686 2.6.3-1.fc38 local 273 k
openssl-libs i686 1:3.0.5-6.fc38 local 2.1 M
p11-kit i686 0.24.1-5.fc38 local 335 k
p11-kit-trust i686 0.24.1-5.fc38 local 135 k
package-notes-srpm-macros noarch 0.5-6.fc38 local 11 k
pam i686 1.5.2-15.fc38 local 535 k
pam-libs i686 1.5.2-15.fc38 local 60 k
pcre2 i686 10.40-1.fc37.1 local 234 k
pcre2-syntax noarch 10.40-1.fc37.1 local 142 k
perl-srpm-macros noarch 1-47.fc38 local 8.2 k
pkgconf i686 1.8.0-3.fc37 local 42 k
pkgconf-m4 noarch 1.8.0-3.fc37 local 14 k
pkgconf-pkg-config i686 1.8.0-3.fc37 local 10 k
popt i686 1.19-1.fc38 local 61 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 local 59 k
python-srpm-macros noarch 3.11-6.fc38 local 25 k
qt5-srpm-macros noarch 5.15.7-1.fc38 local 7.9 k
readline i686 8.2-2.fc38 local 218 k
rpm i686 4.18.0-8.fc38 local 543 k
rpm-build-libs i686 4.18.0-8.fc38 local 102 k
rpm-libs i686 4.18.0-8.fc38 local 341 k
rpm-sequoia i686 1.2.0-1.fc38 local 924 k
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 local 8.8 k
rust-srpm-macros noarch 23-1.fc38 local 9.4 k
setup noarch 2.14.3-1.fc38 local 146 k
sqlite-libs i686 3.40.0-1.fc38 local 705 k
systemd-libs i686 252.4-598.fc38 local 662 k
tzdata noarch 2022g-1.fc38 local 432 k
util-linux-core i686 2.38.1-3.fc38 local 467 k
xxhash-libs i686 0.8.1-3.fc37 local 59 k
xz-libs i686 5.2.9-1.fc38 local 101 k
zip i686 3.0-35.fc38 local 263 k
zlib i686 1.2.13-1.fc38 local 92 k
zstd i686 1.5.2-3.fc37 local 418 k
Installing Groups:
build
Transaction Summary
=========================================================================================================================
Install 153 Packages
Total size: 53 M
Installed size: 179 M
Downloading Packages:
[SKIPPED] libgcc-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libgomp-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libstdc++-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] alternatives-1.21-1.fc38.i686.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.0.9-2.fc38.i686.rpm: Already downloaded
[SKIPPED] authselect-1.4.2-1.fc38.i686.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.2-1.fc38.i686.rpm: Already downloaded
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded
[SKIPPED] bash-5.2.9-3.fc38.i686.rpm: Already downloaded
[SKIPPED] binutils-2.39-6.fc38.i686.rpm: Already downloaded
[SKIPPED] binutils-gold-2.39-6.fc38.i686.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-12.fc37.i686.rpm: Already downloaded
[SKIPPED] bzip2-libs-1.0.8-12.fc37.i686.rpm: Already downloaded
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] coreutils-9.1-8.fc38.i686.rpm: Already downloaded
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Installing : go-srpm-macros-3.2.0-1.fc38.noarch 144/153
Installing : python-srpm-macros-3.11-6.fc38.noarch 145/153
Installing : redhat-rpm-config-235-1.fc38.noarch 146/153
Installing : xxhash-libs-0.8.1-3.fc37.i686 147/153
Installing : gdb-minimal-12.1-10.fc38.i686 148/153
Installing : debugedit-5.0-5.fc37.i686 149/153
Installing : rpm-build-4.18.0-8.fc38.i686 150/153
Installing : util-linux-2.38.1-3.fc38.i686 151/153
Installing : which-2.21-36.fc38.i686 152/153
Installing : info-7.0.1-1.fc38.i686 153/153
Running scriptlet: filesystem-3.18-2.fc37.i686 153/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.i686 153/153
Running scriptlet: rpm-4.18.0-8.fc38.i686 153/153
Running scriptlet: info-7.0.1-1.fc38.i686 153/153
Verifying : libgcc-13.0.0-0.4.fc38.i686 1/153
Verifying : libgomp-13.0.0-0.4.fc38.i686 2/153
Verifying : libstdc++-13.0.0-0.4.fc38.i686 3/153
Verifying : alternatives-1.21-1.fc38.i686 4/153
Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 5/153
Verifying : audit-libs-3.0.9-2.fc38.i686 6/153
Verifying : authselect-1.4.2-1.fc38.i686 7/153
Verifying : authselect-libs-1.4.2-1.fc38.i686 8/153
Verifying : basesystem-11-14.fc37.noarch 9/153
Verifying : bash-5.2.9-3.fc38.i686 10/153
Verifying : binutils-2.39-6.fc38.i686 11/153
Verifying : binutils-gold-2.39-6.fc38.i686 12/153
Verifying : bzip2-1.0.8-12.fc37.i686 13/153
Verifying : bzip2-libs-1.0.8-12.fc37.i686 14/153
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 15/153
Verifying : coreutils-9.1-8.fc38.i686 16/153
Verifying : coreutils-common-9.1-8.fc38.i686 17/153
Verifying : cpio-2.13-13.fc38.i686 18/153
Verifying : cracklib-2.9.7-30.fc38.i686 19/153
Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 20/153
Verifying : curl-7.87.0-1.fc38.i686 21/153
Verifying : cyrus-sasl-lib-2.1.28-8.fc38.i686 22/153
Verifying : debugedit-5.0-5.fc37.i686 23/153
Verifying : diffutils-3.8-3.fc37.i686 24/153
Verifying : dwz-0.15-1.fc38.i686 25/153
Verifying : ed-1.18-2.fc37.i686 26/153
Verifying : efi-srpm-macros-5-6.fc37.noarch 27/153
Verifying : elfutils-0.188-3.fc38.i686 28/153
Verifying : elfutils-debuginfod-client-0.188-3.fc38.i686 29/153
Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 30/153
Verifying : elfutils-libelf-0.188-3.fc38.i686 31/153
Verifying : elfutils-libs-0.188-3.fc38.i686 32/153
Verifying : fedora-gpg-keys-38-0.3.noarch 33/153
Verifying : fedora-release-38-0.6.noarch 34/153
Verifying : fedora-release-common-38-0.6.noarch 35/153
Verifying : fedora-release-identity-basic-38-0.6.noarch 36/153
Verifying : fedora-repos-38-0.3.noarch 37/153
Verifying : fedora-repos-rawhide-38-0.3.noarch 38/153
Verifying : file-5.42-4.fc37.i686 39/153
Verifying : file-libs-5.42-4.fc37.i686 40/153
Verifying : filesystem-3.18-2.fc37.i686 41/153
Verifying : findutils-1:4.9.0-2.fc37.i686 42/153
Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 43/153
Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 44/153
Verifying : gawk-5.1.1-4.fc37.i686 45/153
Verifying : gdb-minimal-12.1-10.fc38.i686 46/153
Verifying : gdbm-libs-1:1.23-2.fc37.i686 47/153
Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 48/153
Verifying : glibc-2.36.9000-18.fc38.i686 49/153
Verifying : glibc-common-2.36.9000-18.fc38.i686 50/153
Verifying : glibc-gconv-extra-2.36.9000-18.fc38.i686 51/153
Verifying : glibc-minimal-langpack-2.36.9000-18.fc38.i686 52/153
Verifying : gmp-1:6.2.1-3.fc37.i686 53/153
Verifying : gnat-srpm-macros-4-16.fc37.noarch 54/153
Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 55/153
Verifying : grep-3.8-1.fc38.i686 56/153
Verifying : gzip-1.12-2.fc37.i686 57/153
Verifying : info-7.0.1-1.fc38.i686 58/153
Verifying : jansson-2.13.1-5.fc37.i686 59/153
Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 60/153
Verifying : keyutils-libs-1.6.1-5.fc37.i686 61/153
Verifying : krb5-libs-1.20.1-3.fc38.i686 62/153
Verifying : libacl-2.3.1-4.fc37.i686 63/153
Verifying : libarchive-3.6.1-3.fc38.i686 64/153
Verifying : libattr-2.5.1-5.fc37.i686 65/153
Verifying : libblkid-2.38.1-3.fc38.i686 66/153
Verifying : libbrotli-1.0.9-9.fc37.i686 67/153
Verifying : libcap-2.48-5.fc37.i686 68/153
Verifying : libcap-ng-0.8.3-4.fc38.i686 69/153
Verifying : libcom_err-1.46.5-3.fc37.i686 70/153
Verifying : libcurl-7.87.0-1.fc38.i686 71/153
Verifying : libdb-5.3.28-54.fc38.i686 72/153
Verifying : libeconf-0.4.0-4.fc37.i686 73/153
Verifying : libevent-2.1.12-7.fc37.i686 74/153
Verifying : libfdisk-2.38.1-3.fc38.i686 75/153
Verifying : libffi-3.4.4-1.fc38.i686 76/153
Verifying : libidn2-2.3.4-1.fc38.i686 77/153
Verifying : libmount-2.38.1-3.fc38.i686 78/153
Verifying : libnghttp2-1.51.0-1.fc38.i686 79/153
Verifying : libnsl2-2.0.0-4.fc37.i686 80/153
Verifying : libpkgconf-1.8.0-3.fc37.i686 81/153
Verifying : libpsl-0.21.1-6.fc37.i686 82/153
Verifying : libpwquality-1.4.4-11.fc37.i686 83/153
Verifying : libselinux-3.4-6.fc38.i686 84/153
Verifying : libsemanage-3.4-6.fc38.i686 85/153
Verifying : libsepol-3.4-4.fc38.i686 86/153
Verifying : libsigsegv-2.14-3.fc37.i686 87/153
Verifying : libsmartcols-2.38.1-3.fc38.i686 88/153
Verifying : libssh-0.10.4-2.fc38.i686 89/153
Verifying : libssh-config-0.10.4-2.fc38.noarch 90/153
Verifying : libtasn1-4.19.0-1.fc38.i686 91/153
Verifying : libtirpc-1.3.3-0.fc37.i686 92/153
Verifying : libunistring-1.0-2.fc37.i686 93/153
Verifying : libutempter-1.2.1-7.fc37.i686 94/153
Verifying : libuuid-2.38.1-3.fc38.i686 95/153
Verifying : libverto-0.3.2-4.fc37.i686 96/153
Verifying : libxcrypt-4.4.33-5.fc38.i686 97/153
Verifying : libxml2-2.10.3-2.fc38.i686 98/153
Verifying : libzstd-1.5.2-3.fc37.i686 99/153
Verifying : lua-libs-5.4.4-6.fc38.i686 100/153
Verifying : lua-srpm-macros-1-7.fc37.noarch 101/153
Verifying : lz4-libs-1.9.3-5.fc37.i686 102/153
Verifying : mpfr-4.1.1-2.fc38.i686 103/153
Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 104/153
Verifying : ncurses-libs-6.3-5.20221126.fc38.i686 105/153
Verifying : nettle-3.8-2.fc37.i686 106/153
Verifying : nim-srpm-macros-3-7.fc37.noarch 107/153
Verifying : ocaml-srpm-macros-7-2.fc37.noarch 108/153
Verifying : openblas-srpm-macros-2-12.fc37.noarch 109/153
Verifying : openldap-2.6.3-1.fc38.i686 110/153
Verifying : openssl-libs-1:3.0.5-6.fc38.i686 111/153
Verifying : p11-kit-0.24.1-5.fc38.i686 112/153
Verifying : p11-kit-trust-0.24.1-5.fc38.i686 113/153
Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 114/153
Verifying : pam-1.5.2-15.fc38.i686 115/153
Verifying : pam-libs-1.5.2-15.fc38.i686 116/153
Verifying : patch-2.7.6-17.fc37.i686 117/153
Verifying : pcre2-10.40-1.fc37.1.i686 118/153
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/153
Verifying : perl-srpm-macros-1-47.fc38.noarch 120/153
Verifying : pkgconf-1.8.0-3.fc37.i686 121/153
Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/153
Verifying : pkgconf-pkg-config-1.8.0-3.fc37.i686 123/153
Verifying : popt-1.19-1.fc38.i686 124/153
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 125/153
Verifying : python-srpm-macros-3.11-6.fc38.noarch 126/153
Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 127/153
Verifying : readline-8.2-2.fc38.i686 128/153
Verifying : redhat-rpm-config-235-1.fc38.noarch 129/153
Verifying : rpm-4.18.0-8.fc38.i686 130/153
Verifying : rpm-build-4.18.0-8.fc38.i686 131/153
Verifying : rpm-build-libs-4.18.0-8.fc38.i686 132/153
Verifying : rpm-libs-4.18.0-8.fc38.i686 133/153
Verifying : rpm-sequoia-1.2.0-1.fc38.i686 134/153
Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 135/153
Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153
Verifying : sed-4.8-11.fc37.i686 137/153
Verifying : setup-2.14.3-1.fc38.noarch 138/153
Verifying : shadow-utils-2:4.13-3.fc38.i686 139/153
Verifying : sqlite-libs-3.40.0-1.fc38.i686 140/153
Verifying : systemd-libs-252.4-598.fc38.i686 141/153
Verifying : tar-2:1.34-5.fc38.i686 142/153
Verifying : tzdata-2022g-1.fc38.noarch 143/153
Verifying : unzip-6.0-58.fc38.i686 144/153
Verifying : util-linux-2.38.1-3.fc38.i686 145/153
Verifying : util-linux-core-2.38.1-3.fc38.i686 146/153
Verifying : which-2.21-36.fc38.i686 147/153
Verifying : xxhash-libs-0.8.1-3.fc37.i686 148/153
Verifying : xz-5.2.9-1.fc38.i686 149/153
Verifying : xz-libs-5.2.9-1.fc38.i686 150/153
Verifying : zip-3.0-35.fc38.i686 151/153
Verifying : zlib-1.2.13-1.fc38.i686 152/153
Verifying : zstd-1.5.2-3.fc37.i686 153/153
Installed:
alternatives-1.21-1.fc38.i686
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-2.fc38.i686
authselect-1.4.2-1.fc38.i686
authselect-libs-1.4.2-1.fc38.i686
basesystem-11-14.fc37.noarch
bash-5.2.9-3.fc38.i686
binutils-2.39-6.fc38.i686
binutils-gold-2.39-6.fc38.i686
bzip2-1.0.8-12.fc37.i686
bzip2-libs-1.0.8-12.fc37.i686
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-8.fc38.i686
coreutils-common-9.1-8.fc38.i686
cpio-2.13-13.fc38.i686
cracklib-2.9.7-30.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
curl-7.87.0-1.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
debugedit-5.0-5.fc37.i686
diffutils-3.8-3.fc37.i686
dwz-0.15-1.fc38.i686
ed-1.18-2.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.i686
elfutils-libs-0.188-3.fc38.i686
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.6.noarch
fedora-release-common-38-0.6.noarch
fedora-release-identity-basic-38-0.6.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-4.fc37.i686
file-libs-5.42-4.fc37.i686
filesystem-3.18-2.fc37.i686
findutils-1:4.9.0-2.fc37.i686
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc37.i686
gdb-minimal-12.1-10.fc38.i686
gdbm-libs-1:1.23-2.fc37.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-18.fc38.i686
glibc-common-2.36.9000-18.fc38.i686
glibc-gconv-extra-2.36.9000-18.fc38.i686
glibc-minimal-langpack-2.36.9000-18.fc38.i686
gmp-1:6.2.1-3.fc37.i686
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-1.fc38.i686
gzip-1.12-2.fc37.i686
info-7.0.1-1.fc38.i686
jansson-2.13.1-5.fc37.i686
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc37.i686
krb5-libs-1.20.1-3.fc38.i686
libacl-2.3.1-4.fc37.i686
libarchive-3.6.1-3.fc38.i686
libattr-2.5.1-5.fc37.i686
libblkid-2.38.1-3.fc38.i686
libbrotli-1.0.9-9.fc37.i686
libcap-2.48-5.fc37.i686
libcap-ng-0.8.3-4.fc38.i686
libcom_err-1.46.5-3.fc37.i686
libcurl-7.87.0-1.fc38.i686
libdb-5.3.28-54.fc38.i686
libeconf-0.4.0-4.fc37.i686
libevent-2.1.12-7.fc37.i686
libfdisk-2.38.1-3.fc38.i686
libffi-3.4.4-1.fc38.i686
libgcc-13.0.0-0.4.fc38.i686
libgomp-13.0.0-0.4.fc38.i686
libidn2-2.3.4-1.fc38.i686
libmount-2.38.1-3.fc38.i686
libnghttp2-1.51.0-1.fc38.i686
libnsl2-2.0.0-4.fc37.i686
libpkgconf-1.8.0-3.fc37.i686
libpsl-0.21.1-6.fc37.i686
libpwquality-1.4.4-11.fc37.i686
libselinux-3.4-6.fc38.i686
libsemanage-3.4-6.fc38.i686
libsepol-3.4-4.fc38.i686
libsigsegv-2.14-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
libssh-0.10.4-2.fc38.i686
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
libtirpc-1.3.3-0.fc37.i686
libunistring-1.0-2.fc37.i686
libutempter-1.2.1-7.fc37.i686
libuuid-2.38.1-3.fc38.i686
libverto-0.3.2-4.fc37.i686
libxcrypt-4.4.33-5.fc38.i686
libxml2-2.10.3-2.fc38.i686
libzstd-1.5.2-3.fc37.i686
lua-libs-5.4.4-6.fc38.i686
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc37.i686
mpfr-4.1.1-2.fc38.i686
ncurses-base-6.3-5.20221126.fc38.noarch
ncurses-libs-6.3-5.20221126.fc38.i686
nettle-3.8-2.fc37.i686
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.i686
openssl-libs-1:3.0.5-6.fc38.i686
p11-kit-0.24.1-5.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.i686
pam-libs-1.5.2-15.fc38.i686
patch-2.7.6-17.fc37.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc37.i686
pkgconf-m4-1.8.0-3.fc37.noarch
pkgconf-pkg-config-1.8.0-3.fc37.i686
popt-1.19-1.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
qt5-srpm-macros-5.15.7-1.fc38.noarch
readline-8.2-2.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
rpm-4.18.0-8.fc38.i686
rpm-build-4.18.0-8.fc38.i686
rpm-build-libs-4.18.0-8.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc37.i686
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
systemd-libs-252.4-598.fc38.i686
tar-2:1.34-5.fc38.i686
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.i686
util-linux-2.38.1-3.fc38.i686
util-linux-core-2.38.1-3.fc38.i686
which-2.21-36.fc38.i686
xxhash-libs-0.8.1-3.fc37.i686
xz-5.2.9-1.fc38.i686
xz-libs-5.2.9-1.fc38.i686
zip-3.0-35.fc38.i686
zlib-1.2.13-1.fc38.i686
zstd-1.5.2-3.fc37.i686
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: kernel-srpm-macros-1.0-15.fc37.noarch
util-linux-core-2.38.1-3.fc38.i686
pcre2-10.40-1.fc37.1.i686
pcre2-syntax-10.40-1.fc37.1.noarch
fedora-repos-rawhide-38-0.3.noarch
glibc-common-2.36.9000-18.fc38.i686
libxcrypt-4.4.33-5.fc38.i686
libselinux-3.4-6.fc38.i686
sed-4.8-11.fc37.i686
authselect-libs-1.4.2-1.fc38.i686
glibc-2.36.9000-18.fc38.i686
libeconf-0.4.0-4.fc37.i686
fonts-srpm-macros-2.0.5-10.fc38.noarch
setup-2.14.3-1.fc38.noarch
binutils-2.39-6.fc38.i686
rpm-build-4.18.0-8.fc38.i686
patch-2.7.6-17.fc37.i686
nettle-3.8-2.fc37.i686
filesystem-3.18-2.fc37.i686
libunistring-1.0-2.fc37.i686
libstdc++-13.0.0-0.4.fc38.i686
dwz-0.15-1.fc38.i686
elfutils-libs-0.188-3.fc38.i686
elfutils-libelf-0.188-3.fc38.i686
zstd-1.5.2-3.fc37.i686
libffi-3.4.4-1.fc38.i686
krb5-libs-1.20.1-3.fc38.i686
p11-kit-trust-0.24.1-5.fc38.i686
keyutils-libs-1.6.1-5.fc37.i686
lua-libs-5.4.4-6.fc38.i686
zip-3.0-35.fc38.i686
bzip2-libs-1.0.8-12.fc37.i686
jansson-2.13.1-5.fc37.i686
libnghttp2-1.51.0-1.fc38.i686
tzdata-2022g-1.fc38.noarch
gdbm-libs-1.23-2.fc37.i686
libxml2-2.10.3-2.fc38.i686
binutils-gold-2.39-6.fc38.i686
file-libs-5.42-4.fc37.i686
qt5-srpm-macros-5.15.7-1.fc38.noarch
pam-1.5.2-15.fc38.i686
fpc-srpm-macros-1.3-6.fc37.noarch
file-5.42-4.fc37.i686
lua-srpm-macros-1-7.fc37.noarch
coreutils-9.1-8.fc38.i686
libuuid-2.38.1-3.fc38.i686
zlib-1.2.13-1.fc38.i686
libmount-2.38.1-3.fc38.i686
sqlite-libs-3.40.0-1.fc38.i686
libcap-ng-0.8.3-4.fc38.i686
rust-srpm-macros-23-1.fc38.noarch
libcurl-7.87.0-1.fc38.i686
curl-7.87.0-1.fc38.i686
xz-5.2.9-1.fc38.i686
libpwquality-1.4.4-11.fc37.i686
elfutils-0.188-3.fc38.i686
fedora-gpg-keys-38-0.3.noarch
libblkid-2.38.1-3.fc38.i686
cyrus-sasl-lib-2.1.28-8.fc38.i686
rpm-4.18.0-8.fc38.i686
elfutils-default-yama-scope-0.188-3.fc38.noarch
libnsl2-2.0.0-4.fc37.i686
openblas-srpm-macros-2-12.fc37.noarch
basesystem-11-14.fc37.noarch
libgomp-13.0.0-0.4.fc38.i686
glibc-gconv-extra-2.36.9000-18.fc38.i686
libevent-2.1.12-7.fc37.i686
ncurses-libs-6.3-5.20221126.fc38.i686
fedora-release-38-0.6.noarch
ansible-srpm-macros-1-8.1.fc38.noarch
systemd-libs-252.4-598.fc38.i686
libsigsegv-2.14-3.fc37.i686
libacl-2.3.1-4.fc37.i686
fedora-repos-38-0.3.noarch
rpm-build-libs-4.18.0-8.fc38.i686
perl-srpm-macros-1-47.fc38.noarch
libpsl-0.21.1-6.fc37.i686
gzip-1.12-2.fc37.i686
package-notes-srpm-macros-0.5-6.fc38.noarch
ed-1.18-2.fc37.i686
fedora-release-identity-basic-38-0.6.noarch
libpkgconf-1.8.0-3.fc37.i686
libattr-2.5.1-5.fc37.i686
cpio-2.13-13.fc38.i686
libidn2-2.3.4-1.fc38.i686
lz4-libs-1.9.3-5.fc37.i686
efi-srpm-macros-5-6.fc37.noarch
libssh-config-0.10.4-2.fc38.noarch
pkgconf-1.8.0-3.fc37.i686
debugedit-5.0-5.fc37.i686
util-linux-2.38.1-3.fc38.i686
unzip-6.0-58.fc38.i686
info-7.0.1-1.fc38.i686
elfutils-debuginfod-client-0.188-3.fc38.i686
fedora-release-common-38-0.6.noarch
readline-8.2-2.fc38.i686
bzip2-1.0.8-12.fc37.i686
which-2.21-36.fc38.i686
bash-5.2.9-3.fc38.i686
diffutils-3.8-3.fc37.i686
libgcc-13.0.0-0.4.fc38.i686
libtasn1-4.19.0-1.fc38.i686
redhat-rpm-config-235-1.fc38.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
libtirpc-1.3.3-0.fc37.i686
authselect-1.4.2-1.fc38.i686
libsepol-3.4-4.fc38.i686
python-srpm-macros-3.11-6.fc38.noarch
pam-libs-1.5.2-15.fc38.i686
libzstd-1.5.2-3.fc37.i686
ncurses-base-6.3-5.20221126.fc38.noarch
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
shadow-utils-4.13-3.fc38.i686
ca-certificates-2022.2.54-5.fc37.noarch
libcap-2.48-5.fc37.i686
ocaml-srpm-macros-7-2.fc37.noarch
alternatives-1.21-1.fc38.i686
gmp-6.2.1-3.fc37.i686
libsmartcols-2.38.1-3.fc38.i686
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
coreutils-common-9.1-8.fc38.i686
pkgconf-m4-1.8.0-3.fc37.noarch
gawk-5.1.1-4.fc37.i686
openssl-libs-3.0.5-6.fc38.i686
findutils-4.9.0-2.fc37.i686
ghc-srpm-macros-1.5.0-7.fc37.noarch
gdb-minimal-12.1-10.fc38.i686
libarchive-3.6.1-3.fc38.i686
libsemanage-3.4-6.fc38.i686
publicsuffix-list-dafsa-20221208-1.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc37.i686
openldap-2.6.3-1.fc38.i686
glibc-minimal-langpack-2.36.9000-18.fc38.i686
libverto-0.3.2-4.fc37.i686
libdb-5.3.28-54.fc38.i686
libbrotli-1.0.9-9.fc37.i686
tar-1.34-5.fc38.i686
libcom_err-1.46.5-3.fc37.i686
audit-libs-3.0.9-2.fc38.i686
gnat-srpm-macros-4-16.fc37.noarch
cracklib-2.9.7-30.fc38.i686
rpm-sequoia-1.2.0-1.fc38.i686
mpfr-4.1.1-2.fc38.i686
rpm-libs-4.18.0-8.fc38.i686
p11-kit-0.24.1-5.fc38.i686
libfdisk-2.38.1-3.fc38.i686
popt-1.19-1.fc38.i686
libssh-0.10.4-2.fc38.i686
libutempter-1.2.1-7.fc37.i686
nim-srpm-macros-3-7.fc37.noarch
xxhash-libs-0.8.1-3.fc37.i686
xz-libs-5.2.9-1.fc38.i686
grep-3.8-1.fc38.i686
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1662163200
Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-1.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-8xiil0gu/R-Biostrings/R-Biostrings.spec) Config(child) 0 minutes 43 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-1.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671756994.049510 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-1.fc38.src.rpm) Config(fedora-rawhide-i686)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671756994.049510/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-i686-bootstrap-1671756994.049510/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-i686-1671756994.049510/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 13 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 11 kB/s | 3.0 kB 00:00
local 16 kB/s | 3.8 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for R-Biostrings-2.64.1-1.fc38.src.rpm
Start: build setup for R-Biostrings-2.64.1-1.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1662163200
Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-1.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 13 kB/s | 3.0 kB 00:00
Additional repo https_jakub_fedorapeople_org_fe 11 kB/s | 3.0 kB 00:00
local 16 kB/s | 3.8 kB 00:00
Dependencies resolved.
======================================================================================================================================
Package Arch Version Repository Size
======================================================================================================================================
Installing:
R-BiocGenerics noarch 0.42.0-1.fc38 local 638 k
R-GenomeInfoDb noarch 1.32.3-1.fc38 local 3.8 M
R-IRanges-devel i686 2.30.1-1.fc38 local 9.9 k
R-S4Vectors-devel i686 0.34.0-1.fc38 local 13 k
R-XVector-devel i686 0.36.0-1.fc38 local 10 k
R-core i686 4.2.2-5.fc38 local 60 M
R-crayon noarch 1.5.1-1.fc38 local 182 k
R-devel i686 4.2.2-5.fc38 local 9.8 k
texlive-collection-latexrecommended noarch 9:svn57862-61.fc38 local 13 k
Installing dependencies:
R-GenomeInfoDbData noarch 1.2.8-1.fc38 local 11 M
R-IRanges i686 2.30.1-1.fc38 local 2.4 M
R-RCurl i686 1.98.1.8-1.fc38 local 853 k
R-S4Vectors i686 0.34.0-1.fc38 local 2.1 M
R-XVector i686 0.36.0-1.fc38 local 652 k
R-bitops i686 1.0.7-6.fc38 local 41 k
R-core-devel i686 4.2.2-5.fc38 local 84 k
R-rpm-macros noarch 1.2.1-5.fc37 local 11 k
adobe-mappings-cmap noarch 20190730-4.fc37 local 2.1 M
adobe-mappings-cmap-deprecated noarch 20190730-4.fc37 local 113 k
adobe-mappings-pdf noarch 20190401-2.fc37 local 689 k
annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k
annobin-plugin-gcc i686 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k
avahi-libs i686 0.8-19.fc38 local 72 k
biber noarch 2.18-1.fc38 local 302 k
brotli i686 1.0.9-9.fc37 local 318 k
brotli-devel i686 1.0.9-9.fc37 local 31 k
bzip2-devel i686 1.0.8-12.fc37 local 214 k
cairo i686 1.17.6-2.fc37 local 721 k
cmake-filesystem i686 3.25.1-1.fc38 local 16 k
cpp i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M
crypto-policies-scripts noarch 20221215-1.gita4c31a3.fc38 local 103 k
cups-libs i686 1:2.4.2-5.fc38 local 284 k
dbus-libs i686 1:1.14.4-1.fc38 local 167 k
desktop-file-utils i686 0.26-7.fc37 local 70 k
emacs-filesystem noarch 1:28.1-3.fc37 local 9.5 k
expat i686 2.5.0-1.fc38 local 115 k
flexiblas i686 3.2.1-2.fc37 local 33 k
flexiblas-devel i686 3.2.1-2.fc37 local 102 k
flexiblas-netlib i686 3.2.1-2.fc37 local 3.0 M
flexiblas-openblas-openmp i686 3.2.1-2.fc37 local 17 k
fontconfig i686 2.14.1-2.fc38 local 291 k
fontconfig-devel i686 2.14.1-2.fc38 local 128 k
fonts-filesystem noarch 1:2.0.5-10.fc38 local 8.0 k
freetype i686 2.12.1-3.fc37 local 418 k
freetype-devel i686 2.12.1-3.fc37 local 859 k
fribidi i686 1.0.12-2.fc37 local 89 k
gc i686 8.2.2-1.fc38 local 112 k
gcc i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 34 M
gcc-c++ i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 13 M
gcc-gfortran i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 12 M
gcc-plugin-annobin i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 k
gettext i686 0.21.1-1.fc38 local 1.0 M
gettext-envsubst i686 0.21.1-1.fc38 local 37 k
gettext-libs i686 0.21.1-1.fc38 local 336 k
gettext-runtime i686 0.21.1-1.fc38 local 108 k
ghostscript i686 9.56.1-5.fc38 local 37 k
ghostscript-tools-fonts i686 9.56.1-5.fc38 local 12 k
ghostscript-tools-printing i686 9.56.1-5.fc38 local 12 k
glib2 i686 2.74.1-2.fc38 local 2.8 M
glib2-devel i686 2.74.1-2.fc38 local 519 k
glibc-devel i686 2.36.9000-18.fc38 local 43 k
glibc-headers-x86 noarch 2.36.9000-18.fc38 local 450 k
gnutls i686 3.7.8-9.fc38 local 1.1 M
google-droid-sans-fonts noarch 20200215-13.fc37 local 2.7 M
google-noto-fonts-common noarch 20201206^1.git0c78c8329-9.fc38 local 18 k
google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-9.fc38 local 729 k
graphite2 i686 1.3.14-10.fc37 local 96 k
graphite2-devel i686 1.3.14-10.fc37 local 20 k
groff-base i686 1.22.4-10.fc37 local 1.0 M
guile22 i686 2.2.7-6.fc37 local 6.5 M
harfbuzz i686 6.0.0-1.fc38 local 844 k
harfbuzz-devel i686 6.0.0-1.fc38 local 362 k
harfbuzz-icu i686 6.0.0-1.fc38 local 16 k
jbig2dec-libs i686 0.19-7.fc37 local 76 k
jbigkit-libs i686 2.1-24.fc37 local 53 k
kernel-headers i686 6.1.0-1.fc38 local 1.4 M
langpacks-core-font-en noarch 3.0-27.fc38 local 9.9 k
lcms2 i686 2.14-1.fc38 local 192 k
less i686 608-1.fc38 local 171 k
libICE i686 1.0.10-9.fc37 local 74 k
libRmath i686 4.2.2-5.fc38 local 128 k
libRmath-devel i686 4.2.2-5.fc38 local 15 k
libSM i686 1.2.3-11.fc37 local 42 k
libX11 i686 1.8.1-2.fc38 local 671 k
libX11-common noarch 1.8.1-2.fc38 local 150 k
libX11-devel i686 1.8.1-2.fc38 local 938 k
libX11-xcb i686 1.8.1-2.fc38 local 12 k
libXau i686 1.0.11-1.fc38 local 32 k
libXau-devel i686 1.0.11-1.fc38 local 13 k
libXaw i686 1.0.14-3.fc37 local 198 k
libXext i686 1.3.5-1.fc38 local 42 k
libXft i686 2.3.6-1.fc38 local 72 k
libXft-devel i686 2.3.6-1.fc38 local 36 k
libXi i686 1.8-3.fc37 local 42 k
libXmu i686 1.1.4-1.fc38 local 80 k
libXpm i686 3.5.13-8.fc37 local 61 k
libXrender i686 0.9.11-1.fc38 local 29 k
libXrender-devel i686 0.9.11-1.fc38 local 19 k
libXt i686 1.2.1-3.fc37 local 189 k
libasan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 491 k
libatomic i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 17 k
libb2 i686 0.98.1-7.fc37 local 35 k
libblkid-devel i686 2.38.1-3.fc38 local 16 k
libdatrie i686 0.2.13-4.fc37 local 33 k
libffi-devel i686 3.4.4-1.fc38 local 28 k
libgfortran i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 825 k
libgs i686 9.56.1-5.fc38 local 3.7 M
libicu i686 71.1-2.fc38 local 10 M
libicu-devel i686 71.1-2.fc38 local 843 k
libijs i686 0.35-16.fc37 local 30 k
libjpeg-turbo i686 2.1.4-1.fc38 local 199 k
libmount-devel i686 2.38.1-3.fc38 local 18 k
libmpc i686 1.2.1-5.fc37 local 65 k
libpaper i686 1.1.28-5.fc37 local 41 k
libpng i686 2:1.6.37-13.fc37 local 127 k
libpng-devel i686 2:1.6.37-13.fc37 local 292 k
libquadmath i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 225 k
libquadmath-devel i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 20 k
libselinux-devel i686 3.4-6.fc38 local 114 k
libsepol-devel i686 3.4-4.fc38 local 40 k
libstdc++-devel i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M
libthai i686 0.1.29-3.fc37 local 214 k
libtiff i686 4.4.0-4.fc37 local 215 k
libtool-ltdl i686 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 39 k
libubsan i686 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 219 k
libwebp i686 1.2.4-2.fc38 local 289 k
libxcb i686 1.13.1-10.fc37 local 247 k
libxcb-devel i686 1.13.1-10.fc37 local 1.0 M
libxcrypt-devel i686 4.4.33-5.fc38 local 30 k
libxml2-devel i686 2.10.3-2.fc38 local 502 k
libxslt i686 1.1.37-1.fc38 local 198 k
mailcap noarch 2.1.53-4.fc37 local 33 k
make i686 1:4.3-11.fc37 local 540 k
mpdecimal i686 2.5.1-4.fc37 local 106 k
ncurses i686 6.3-5.20221126.fc38 local 409 k
nspr i686 4.35.0-2.fc38 local 147 k
nss i686 3.85.0-1.fc38 local 748 k
nss-softokn i686 3.85.0-1.fc38 local 1.1 M
nss-softokn-freebl i686 3.85.0-1.fc38 local 353 k
nss-sysinit i686 3.85.0-1.fc38 local 18 k
nss-util i686 3.85.0-1.fc38 local 89 k
openblas i686 0.3.21-4.fc38 local 35 k
openblas-openmp i686 0.3.21-4.fc38 local 3.8 M
openjpeg2 i686 2.5.0-2.fc37 local 189 k
pango i686 1.50.12-1.fc38 local 357 k
pcre2-devel i686 10.40-1.fc37.1 local 473 k
pcre2-utf16 i686 10.40-1.fc37.1 local 216 k
pcre2-utf32 i686 10.40-1.fc37.1 local 203 k
perl-Authen-SASL noarch 2.16-28.fc37 local 52 k
perl-AutoLoader noarch 5.74-492.fc38 local 24 k
perl-B i686 1.83-492.fc38 local 189 k
perl-B-Hooks-EndOfScope noarch 0.26-4.fc37 local 38 k
perl-Business-ISBN noarch 3.007-4.fc37 local 33 k
perl-Business-ISBN-Data noarch 20210112.006-6.fc37 local 36 k
perl-Business-ISMN noarch 1.202-6.fc37 local 25 k
perl-Business-ISSN noarch 1.005-3.fc37 local 18 k
perl-Carp noarch 1.52-489.fc37 local 29 k
perl-Class-Accessor noarch 0.51-16.fc37 local 29 k
perl-Class-Data-Inheritable noarch 0.09-4.fc37 local 13 k
perl-Class-Inspector noarch 1.36-12.fc38 local 31 k
perl-Class-Method-Modifiers noarch 2.13-13.fc37 local 44 k
perl-Class-Singleton noarch 1.6-7.fc37 local 27 k
perl-Class-Struct noarch 0.66-492.fc38 local 25 k
perl-Clone i686 0.46-1.fc38 local 22 k
perl-Compress-Raw-Bzip2 i686 2.201-2.fc37 local 35 k
perl-Compress-Raw-Zlib i686 2.202-4.fc38 local 65 k
perl-Convert-ASN1 noarch 0.33-4.fc37 local 60 k
perl-Data-Compare noarch 1.27-10.fc37 local 35 k
perl-Data-Dump noarch 1.25-5.fc37 local 33 k
perl-Data-Dumper i686 2.184-490.fc37 local 58 k
perl-Data-OptList noarch 0.112-5.fc37 local 27 k
perl-Data-Uniqid noarch 0.12-29.fc37 local 12 k
perl-Date-ISO8601 noarch 0.005-16.fc37 local 20 k
perl-Date-Manip noarch 6.90-1.fc38 local 1.0 M
perl-DateTime i686 2:1.59-1.fc38 local 133 k
perl-DateTime-Calendar-Julian noarch 0.107-3.fc37 local 24 k
perl-DateTime-Format-Builder noarch 0.8300-8.fc37 local 85 k
perl-DateTime-Format-Strptime noarch 1:1.79-6.fc37 local 42 k
perl-DateTime-Locale noarch 1.37-1.fc38 local 3.0 M
perl-DateTime-TimeZone noarch 2.57-1.fc38 local 335 k
perl-DateTime-TimeZone-SystemV noarch 0.010-17.fc37 local 24 k
perl-DateTime-TimeZone-Tzfile noarch 0.011-17.fc37 local 20 k
perl-Devel-CallChecker i686 0.008-18.fc38 local 23 k
perl-Devel-Caller i686 2.06-29.fc37 local 19 k
perl-Devel-GlobalDestruction noarch 0.14-19.fc37 local 17 k
perl-Devel-LexAlias i686 0.05-30.fc37 local 16 k
perl-Devel-StackTrace noarch 1:2.04-14.fc38 local 30 k
perl-Digest noarch 1.20-489.fc37 local 26 k
perl-Digest-HMAC noarch 1.04-6.fc37 local 23 k
perl-Digest-MD5 i686 2.58-489.fc37 local 37 k
perl-Digest-SHA i686 1:6.03-1.fc37 local 62 k
perl-Dist-CheckConflicts noarch 0.11-26.fc37 local 23 k
perl-DynaLoader i686 1.52-492.fc38 local 29 k
perl-DynaLoader-Functions noarch 0.003-17.fc38 local 18 k
perl-Email-Date-Format noarch 1.005-23.fc37 local 18 k
perl-Encode i686 4:3.19-492.fc38 local 1.2 M
perl-Encode-Locale noarch 1.05-25.fc38 local 18 k
perl-English noarch 1.11-492.fc38 local 17 k
perl-Errno i686 1.36-492.fc38 local 18 k
perl-Eval-Closure noarch 0.14-19.fc37 local 24 k
perl-Exception-Class noarch 1.45-6.fc37 local 44 k
perl-Exporter noarch 5.77-489.fc37 local 31 k
perl-ExtUtils-MM-Utils noarch 2:7.64-490.fc37 local 12 k
perl-Fcntl i686 1.15-492.fc38 local 24 k
perl-File-Basename noarch 2.85-492.fc38 local 20 k
perl-File-Compare noarch 1.100.700-492.fc38 local 16 k
perl-File-Copy noarch 2.39-492.fc38 local 23 k
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texlive-mptopdf noarch 9:20210325-52.fc38 local 52 k
texlive-ms noarch 9:svn57473-61.fc38 local 18 k
texlive-multido noarch 9:svn18302.1.42-61.fc38 local 18 k
texlive-natbib noarch 9:svn20668.8.31b-61.fc38 local 32 k
texlive-ncntrsbk noarch 9:svn31835.0-61.fc38 local 343 k
texlive-newfloat noarch 9:svn52906-61.fc38 local 120 k
texlive-notoccite noarch 9:svn18129.0-61.fc38 local 13 k
texlive-ntgclass noarch 9:svn56959-61.fc38 local 35 k
texlive-oberdiek noarch 9:20210325-52.fc38 local 8.6 M
texlive-pagesel noarch 9:svn56105-61.fc38 local 341 k
texlive-palatino noarch 9:svn31835.0-61.fc38 local 392 k
texlive-paralist noarch 9:svn43021-61.fc38 local 18 k
texlive-parallel noarch 9:svn15878.0-61.fc38 local 18 k
texlive-parskip noarch 9:svn58358-61.fc38 local 17 k
texlive-pdfcolmk noarch 9:svn52912-61.fc38 local 19 k
texlive-pdfescape noarch 9:svn53082-61.fc38 local 353 k
texlive-pdflscape noarch 9:svn53047-61.fc38 local 308 k
texlive-pdfmanagement-testphase noarch 9:svn59194-61.fc38 local 6.4 M
texlive-pdfpages noarch 9:svn58212-61.fc38 local 32 k
texlive-pdftex i686 9:20210325-52.fc38 local 1.9 M
texlive-pdftexcmds noarch 9:svn55777-61.fc38 local 391 k
texlive-pgf noarch 9:svn57240-61.fc38 local 822 k
texlive-picture noarch 9:svn54867-61.fc38 local 313 k
texlive-placeins noarch 9:svn19848.2.2-61.fc38 local 14 k
texlive-plain noarch 9:svn57963-61.fc38 local 44 k
texlive-polyglossia noarch 9:svn58869-61.fc38 local 169 k
texlive-psfrag noarch 9:svn15878.3.04-61.fc38 local 16 k
texlive-pslatex noarch 9:svn57434-61.fc38 local 23 k
texlive-psnfss noarch 9:svn54694-61.fc38 local 42 k
texlive-pspicture noarch 9:svn15878.0-61.fc38 local 17 k
texlive-pst-3d noarch 9:svn17257.1.10-61.fc38 local 19 k
texlive-pst-coil noarch 9:svn37377.1.07-61.fc38 local 19 k
texlive-pst-eps noarch 9:svn15878.1.0-61.fc38 local 18 k
texlive-pst-fill noarch 9:svn15878.1.01-61.fc38 local 19 k
texlive-pst-grad noarch 9:svn15878.1.06-61.fc38 local 19 k
texlive-pst-math noarch 9:svn49425-61.fc38 local 21 k
texlive-pst-node noarch 9:svn54687-61.fc38 local 41 k
texlive-pst-ovl noarch 9:svn54963-61.fc38 local 17 k
texlive-pst-plot noarch 9:svn54080-61.fc38 local 38 k
texlive-pst-text noarch 9:svn49542-61.fc38 local 19 k
texlive-pst-tools noarch 9:svn54518-61.fc38 local 21 k
texlive-pst-tree noarch 9:svn43272-61.fc38 local 21 k
texlive-pstricks noarch 9:svn58371-61.fc38 local 99 k
texlive-pstricks-add noarch 9:svn53763-61.fc38 local 37 k
texlive-pxfonts noarch 9:svn15878.0-61.fc38 local 496 k
texlive-qstest noarch 9:svn15878.0-61.fc38 local 20 k
texlive-ragged2e noarch 9:svn57638-61.fc38 local 664 k
texlive-rcs noarch 9:svn15878.0-61.fc38 local 28 k
texlive-realscripts noarch 9:svn56594-61.fc38 local 19 k
texlive-refcount noarch 9:svn53164-61.fc38 local 335 k
texlive-rerunfilecheck noarch 9:svn54841-61.fc38 local 324 k
texlive-rsfs noarch 9:svn15878.0-61.fc38 local 70 k
texlive-sansmath noarch 9:svn17997.1.1-61.fc38 local 15 k
texlive-sansmathaccent noarch 9:svn53628-61.fc38 local 33 k
texlive-sauerj noarch 9:svn15878.0-61.fc38 local 20 k
texlive-section noarch 9:svn20180.0-61.fc38 local 24 k
texlive-seminar noarch 9:svn34011.1.62-61.fc38 local 48 k
texlive-sepnum noarch 9:svn20186.2.0-61.fc38 local 17 k
texlive-setspace noarch 9:svn24881.6.7a-61.fc38 local 19 k
texlive-showexpl noarch 9:svn57414-61.fc38 local 19 k
texlive-soul noarch 9:svn56495-61.fc38 local 21 k
texlive-stringenc noarch 9:svn52982-61.fc38 local 695 k
texlive-subfig noarch 9:svn15878.1.3-61.fc38 local 22 k
texlive-symbol noarch 9:svn31835.0-61.fc38 local 55 k
texlive-tex i686 9:20210325-52.fc38 local 188 k
texlive-tex-gyre noarch 9:svn48058-61.fc38 local 7.9 M
texlive-tex-gyre-math noarch 9:svn41264-61.fc38 local 1.4 M
texlive-tex-ini-files noarch 9:svn40533-61.fc38 local 16 k
texlive-texlive-common-doc noarch 9:svn54176-61.fc38 local 106 k
texlive-texlive-en noarch 9:20210325-52.fc38 local 1.9 M
texlive-texlive-msg-translations noarch 9:svn59096-61.fc38 local 158 k
texlive-texlive-scripts noarch 9:20210325-52.fc38 local 106 k
texlive-texlive-scripts-extra noarch 9:20210325-52.fc38 local 55 k
texlive-texlive.infra noarch 9:20210325-52.fc38 local 281 k
texlive-textcase noarch 9:svn52092-61.fc38 local 16 k
texlive-thumbpdf noarch 9:20210325-52.fc38 local 40 k
texlive-times noarch 9:svn35058.0-61.fc38 local 344 k
texlive-tipa noarch 9:svn29349.1.3-61.fc38 local 2.8 M
texlive-titlesec noarch 9:svn52413-61.fc38 local 35 k
texlive-tools noarch 9:svn56514-61.fc38 local 65 k
texlive-translator noarch 9:svn56052-61.fc38 local 271 k
texlive-transparent noarch 9:svn52981-61.fc38 local 277 k
texlive-txfonts noarch 9:svn15878.0-61.fc38 local 767 k
texlive-typehtml noarch 9:svn17134.0-61.fc38 local 21 k
texlive-ucharcat noarch 9:svn38907-61.fc38 local 16 k
texlive-ucs noarch 9:svn35853.2.2-61.fc38 local 347 k
texlive-underscore noarch 9:svn18261.0-61.fc38 local 19 k
texlive-unicode-data noarch 9:svn56768-61.fc38 local 356 k
texlive-unicode-math noarch 9:svn56594-61.fc38 local 64 k
texlive-uniquecounter noarch 9:svn53162-61.fc38 local 301 k
texlive-url noarch 9:svn32528.3.4-61.fc38 local 20 k
texlive-utopia noarch 9:svn15878.0-61.fc38 local 230 k
texlive-varwidth noarch 9:svn24104.0.92-61.fc38 local 18 k
texlive-wasy noarch 9:svn53533-61.fc38 local 40 k
texlive-wasy-type1 noarch 9:svn53534-61.fc38 local 268 k
texlive-wasysym noarch 9:svn54080-61.fc38 local 19 k
texlive-xcolor noarch 9:svn41044-61.fc38 local 33 k
texlive-xdvi i686 9:20210325-52.fc38 local 347 k
texlive-xetex i686 9:20210325-52.fc38 local 1.2 M
texlive-xetexconfig noarch 9:svn45845-61.fc38 local 12 k
texlive-xifthen noarch 9:svn38929-61.fc38 local 17 k
texlive-xkeyval noarch 9:svn57006-61.fc38 local 28 k
texlive-xltxtra noarch 9:svn56594-61.fc38 local 17 k
texlive-xpatch noarch 9:svn54563-61.fc38 local 19 k
texlive-xstring noarch 9:svn49946-61.fc38 local 26 k
texlive-xunicode noarch 9:svn30466.0.981-61.fc38 local 45 k
texlive-zapfchan noarch 9:svn31835.0-61.fc38 local 105 k
texlive-zapfding noarch 9:svn31835.0-61.fc38 local 65 k
texlive-zref noarch 9:svn56611-61.fc38 local 667 k
tk i686 1:8.6.12-3.fc37 local 1.6 M
tk-devel i686 1:8.6.12-3.fc37 local 486 k
tre i686 0.8.0-37.20140228gitc2f5d13.fc37 local 43 k
tre-common noarch 0.8.0-37.20140228gitc2f5d13.fc37 local 31 k
tre-devel i686 0.8.0-37.20140228gitc2f5d13.fc37 local 12 k
urw-base35-bookman-fonts noarch 20200910-15.fc37 local 848 k
urw-base35-c059-fonts noarch 20200910-15.fc37 local 875 k
urw-base35-d050000l-fonts noarch 20200910-15.fc37 local 76 k
urw-base35-fonts noarch 20200910-15.fc37 local 11 k
urw-base35-fonts-common noarch 20200910-15.fc37 local 21 k
urw-base35-gothic-fonts noarch 20200910-15.fc37 local 643 k
urw-base35-nimbus-mono-ps-fonts noarch 20200910-15.fc37 local 796 k
urw-base35-nimbus-roman-fonts noarch 20200910-15.fc37 local 857 k
urw-base35-nimbus-sans-fonts noarch 20200910-15.fc37 local 1.3 M
urw-base35-p052-fonts noarch 20200910-15.fc37 local 974 k
urw-base35-standard-symbols-ps-fonts noarch 20200910-15.fc37 local 42 k
urw-base35-z003-fonts noarch 20200910-15.fc37 local 276 k
vim-data noarch 2:9.0.1054-1.fc38 local 24 k
vim-minimal i686 2:9.0.1054-1.fc38 local 744 k
xdg-utils noarch 1.1.3-12.fc37 local 73 k
xml-common noarch 0.6.3-59.fc37 local 31 k
xorg-x11-proto-devel noarch 2022.2-2.fc38 local 264 k
xz-devel i686 5.2.9-1.fc38 local 53 k
zlib-devel i686 1.2.13-1.fc38 local 45 k
zziplib i686 0.13.72-2.fc37 local 88 k
Transaction Summary
======================================================================================================================================
Install 699 Packages
Total size: 463 M
Total download size: 21 M
Installed size: 1.1 G
Downloading Packages:
[SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded
[SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.i686.rpm: Already downloaded
[SKIPPED] cpp-13.0.0-0.4.fc38.i686.rpm: Already downloaded
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[SKIPPED] libasan-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libatomic-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libgfortran-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] libquadmath-13.0.0-0.4.fc38.i686.rpm: Already downloaded
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[SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.i686.rpm: Already downloaded
[SKIPPED] libubsan-13.0.0-0.4.fc38.i686.rpm: Already downloaded
[SKIPPED] R-BiocGenerics-0.42.0-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] R-core-4.2.2-5.fc38.i686.rpm: Already downloaded
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[SKIPPED] R-devel-4.2.2-5.fc38.i686.rpm: Already downloaded
[SKIPPED] R-rpm-macros-1.2.1-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-cmap-20190730-4.fc37.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-cmap-deprecated-20190730-4.fc37.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-pdf-20190401-2.fc37.noarch.rpm: Already downloaded
[SKIPPED] avahi-libs-0.8-19.fc38.i686.rpm: Already downloaded
[SKIPPED] biber-2.18-1.fc38.noarch.rpm: Already downloaded
[SKIPPED] brotli-1.0.9-9.fc37.i686.rpm: Already downloaded
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[SKIPPED] bzip2-devel-1.0.8-12.fc37.i686.rpm: Already downloaded
[SKIPPED] cairo-1.17.6-2.fc37.i686.rpm: Already downloaded
[SKIPPED] cmake-filesystem-3.25.1-1.fc38.i686.rpm: Already downloaded
[SKIPPED] crypto-policies-scripts-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded
[SKIPPED] cups-libs-2.4.2-5.fc38.i686.rpm: Already downloaded
[SKIPPED] dbus-libs-1.14.4-1.fc38.i686.rpm: Already downloaded
[SKIPPED] desktop-file-utils-0.26-7.fc37.i686.rpm: Already downloaded
[SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] expat-2.5.0-1.fc38.i686.rpm: Already downloaded
[SKIPPED] flexiblas-3.2.1-2.fc37.i686.rpm: Already downloaded
[SKIPPED] flexiblas-devel-3.2.1-2.fc37.i686.rpm: Already downloaded
[SKIPPED] flexiblas-netlib-3.2.1-2.fc37.i686.rpm: Already downloaded
[SKIPPED] flexiblas-openblas-openmp-3.2.1-2.fc37.i686.rpm: Already downloaded
[SKIPPED] fontconfig-2.14.1-2.fc38.i686.rpm: Already downloaded
[SKIPPED] fontconfig-devel-2.14.1-2.fc38.i686.rpm: Already downloaded
[SKIPPED] fonts-filesystem-2.0.5-10.fc38.noarch.rpm: Already downloaded
[SKIPPED] freetype-2.12.1-3.fc37.i686.rpm: Already downloaded
[SKIPPED] freetype-devel-2.12.1-3.fc37.i686.rpm: Already downloaded
[SKIPPED] fribidi-1.0.12-2.fc37.i686.rpm: Already downloaded
[SKIPPED] gc-8.2.2-1.fc38.i686.rpm: Already downloaded
[SKIPPED] gettext-0.21.1-1.fc38.i686.rpm: Already downloaded
[SKIPPED] gettext-envsubst-0.21.1-1.fc38.i686.rpm: Already downloaded
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[SKIPPED] gettext-runtime-0.21.1-1.fc38.i686.rpm: Already downloaded
[SKIPPED] ghostscript-9.56.1-5.fc38.i686.rpm: Already downloaded
[SKIPPED] ghostscript-tools-fonts-9.56.1-5.fc38.i686.rpm: Already downloaded
[SKIPPED] ghostscript-tools-printing-9.56.1-5.fc38.i686.rpm: Already downloaded
[SKIPPED] glib2-2.74.1-2.fc38.i686.rpm: Already downloaded
[SKIPPED] glib2-devel-2.74.1-2.fc38.i686.rpm: Already downloaded
[SKIPPED] glibc-devel-2.36.9000-18.fc38.i686.rpm: Already downloaded
[SKIPPED] glibc-headers-x86-2.36.9000-18.fc38.noarch.rpm: Already downloaded
[SKIPPED] gnutls-3.7.8-9.fc38.i686.rpm: Already downloaded
[SKIPPED] google-droid-sans-fonts-20200215-13.fc37.noarch.rpm: Already downloaded
[SKIPPED] google-noto-fonts-common-20201206^1.git0c78c8329-9.fc38.noarch.rpm: Already downloaded
[SKIPPED] google-noto-sans-vf-fonts-20201206^1.git0c78c8329-9.fc38.noarch.rpm: Already downloaded
[SKIPPED] graphite2-1.3.14-10.fc37.i686.rpm: Already downloaded
[SKIPPED] graphite2-devel-1.3.14-10.fc37.i686.rpm: Already downloaded
[SKIPPED] groff-base-1.22.4-10.fc37.i686.rpm: Already downloaded
[SKIPPED] guile22-2.2.7-6.fc37.i686.rpm: Already downloaded
[SKIPPED] harfbuzz-6.0.0-1.fc38.i686.rpm: Already downloaded
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[SKIPPED] harfbuzz-icu-6.0.0-1.fc38.i686.rpm: Already downloaded
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[SKIPPED] langpacks-core-font-en-3.0-27.fc38.noarch.rpm: Already downloaded
[SKIPPED] lcms2-2.14-1.fc38.i686.rpm: Already downloaded
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[SKIPPED] libICE-1.0.10-9.fc37.i686.rpm: Already downloaded
[SKIPPED] libRmath-4.2.2-5.fc38.i686.rpm: Already downloaded
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[SKIPPED] libSM-1.2.3-11.fc37.i686.rpm: Already downloaded
[SKIPPED] libX11-1.8.1-2.fc38.i686.rpm: Already downloaded
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[SKIPPED] libX11-xcb-1.8.1-2.fc38.i686.rpm: Already downloaded
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[SKIPPED] libXaw-1.0.14-3.fc37.i686.rpm: Already downloaded
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[SKIPPED] perl-Authen-SASL-2.16-28.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-AutoLoader-5.74-492.fc38.noarch.rpm: Already downloaded
[SKIPPED] perl-B-1.83-492.fc38.i686.rpm: Already downloaded
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xorg-x11-proto-devel-2022.2-2.fc38.noarch
xz-devel-5.2.9-1.fc38.i686
zlib-devel-1.2.13-1.fc38.i686
zziplib-0.13.72-2.fc37.i686
Complete!
Finish: build setup for R-Biostrings-2.64.1-1.fc38.src.rpm
Start: rpmbuild R-Biostrings-2.64.1-1.fc38.src.rpm
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1662163200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lDZeYq
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf Biostrings
+ /usr/bin/mkdir -p Biostrings
+ cd Biostrings
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Biostrings_2.64.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.TpSh12
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Biostrings
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pMQkfc
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386
++ dirname /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Biostrings
+ rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386
+ mkdir -p /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386/usr/lib/R/library
+ R CMD INSTALL Biostrings -l /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386/usr/lib/R/library
* installing *source* package 'Biostrings' ...
** using staged installation
** libs
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c BAB_class.c -o BAB_class.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c BitMatrix.c -o BitMatrix.o
BitMatrix.c:299:13: warning: 'BitMatrix_print' defined but not used [-Wunused-function]
299 | static void BitMatrix_print(BitMatrix *bitmat)
| ^~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c MIndex_class.c -o MIndex_class.o
MIndex_class.c: In function 'SparseMIndex_endIndex':
MIndex_class.c:184:27: warning: unused variable 'poffsets_order' [-Wunused-variable]
184 | IntAE *poffsets, *poffsets_order;
| ^~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c PreprocessedTB_class.c -o PreprocessedTB_class.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RoSeqs_utils.c -o RoSeqs_utils.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c SparseList_utils.c -o SparseList_utils.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c XStringSetList_class.c -o XStringSetList_class.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c XStringSet_class.c -o XStringSet_class.o
XStringSet_class.c: In function 'new_XStringSet_from_CHARACTER':
XStringSet_class.c:124:17: warning: 'lkup_len' may be used uninitialized [-Wmaybe-uninitialized]
124 | _copy_CHARSXP_to_Chars_holder(&ans_elt_holder, x_elt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
125 | INTEGER(start)[i], lkup0, lkup_len);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
XStringSet_class.c:103:22: note: 'lkup_len' was declared here
103 | int ans_len, lkup_len, i;
| ^~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c XString_class.c -o XString_class.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c align_needwunsQS.c -o align_needwunsQS.o
align_needwunsQS.c: In function 'align_needwunsQS':
align_needwunsQS.c:155:29: warning: 'sc' may be used uninitialized [-Wmaybe-uninitialized]
155 | INTEGER(ans_elt)[0] = score;
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~
align_needwunsQS.c:27:19: note: 'sc' was declared here
27 | int *sco, sc, n1, n2, i1, i2, j1, j2, al_buf_size;
| ^~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c align_utils.c -o align_utils.o
align_utils.c: In function 'PairwiseAlignmentsSingleSubject_align_aligned':
align_utils.c:232:78: warning: 'indelStartPattern' may be used uninitialized [-Wmaybe-uninitialized]
232 | if ((numberOfIndelPattern == 0) || (jPattern < indelStartPattern)) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
align_utils.c:221:21: note: 'indelStartPattern' was declared here
221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject;
| ^~~~~~~~~~~~~~~~~
align_utils.c:238:55: warning: 'indelWidthPattern' may be used uninitialized [-Wmaybe-uninitialized]
238 | for (k = 0; k < indelWidthPattern; k++) {
| ~~^~~~~~~~~~~~~~~~~~~
align_utils.c:221:40: note: 'indelWidthPattern' was declared here
221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject;
| ^~~~~~~~~~~~~~~~~
align_utils.c:231:63: warning: 'indelStartSubject' may be used uninitialized [-Wmaybe-uninitialized]
231 | if ((numberOfIndelSubject == 0) || (j < indelStartSubject)) {
| ~~~^~~~~~~~~~~~~~~~~~~~
align_utils.c:221:59: note: 'indelStartSubject' was declared here
221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject;
| ^~~~~~~~~~~~~~~~~
align_utils.c:250:42: warning: 'indelWidthSubject' may be used uninitialized [-Wmaybe-uninitialized]
250 | jPattern += indelWidthSubject;
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
align_utils.c:221:78: note: 'indelWidthSubject' was declared here
221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject;
| ^~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c find_palindromes.c -o find_palindromes.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gtestsim.c -o gtestsim.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c inject_code.c -o inject_code.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c letter_frequency.c -o letter_frequency.o
letter_frequency.c: In function 'XStringSet_two_way_letter_frequency':
letter_frequency.c:957:48: warning: unused variable 'x_pos' [-Wunused-variable]
957 | int x_width, y_width, x_length, *ans_mat, i, x_pos;
| ^~~~~
letter_frequency.c:956:13: warning: unused variable 'ans_dimnames' [-Wunused-variable]
956 | SEXP ans, ans_dimnames;
| ^~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lowlevel_matching.c -o lowlevel_matching.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_PWM.c -o match_PWM.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pattern.c -o match_pattern.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o
match_pattern_boyermoore.c: In function '_match_pattern_boyermoore':
match_pattern_boyermoore.c:417:32: warning: 'i1' may be used uninitialized [-Wmaybe-uninitialized]
417 | for (i = i1-1, j = j1-1; j >= 0; i--, j--)
| ~~^~~~~~
match_pattern_boyermoore.c:383:42: note: 'i1' was declared here
383 | int nmatches, last_match_end, n, i1, i2, j1, j2, shift, shift1,
| ^~
match_pattern_boyermoore.c:417:42: warning: 'j1' may be used uninitialized [-Wmaybe-uninitialized]
417 | for (i = i1-1, j = j1-1; j >= 0; i--, j--)
| ~~^~~~~~
match_pattern_boyermoore.c:383:50: note: 'j1' was declared here
383 | int nmatches, last_match_end, n, i1, i2, j1, j2, shift, shift1,
| ^~
match_pattern_boyermoore.c:383:46: warning: 'i2' may be used uninitialized [-Wmaybe-uninitialized]
383 | int nmatches, last_match_end, n, i1, i2, j1, j2, shift, shift1,
| ^~
match_pattern_boyermoore.c:445:41: warning: 'c' may be used uninitialized [-Wmaybe-uninitialized]
445 | shift = get_VSGSshift(c, j1 - 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~
match_pattern_boyermoore.c:385:23: note: 'c' was declared here
385 | char ppP_rmc, c; /* ppP_rmc is 'ppP.seq' right-most char */
| ^
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pattern_indels.c -o match_pattern_indels.o
match_pattern_indels.c:7:13: warning: 'test_match_pattern_indels' defined but not used [-Wunused-function]
7 | static void test_match_pattern_indels(const char *p, const char *s,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pattern_shiftor.c -o match_pattern_shiftor.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pdict.c -o match_pdict.o
In function 'vcount_PDict3Parts_XStringSet',
inlined from 'vmatch_PDict3Parts_XStringSet' at match_pdict.c:508:10:
match_pdict.c:419:33: warning: 'ans_col' may be used uninitialized [-Wmaybe-uninitialized]
419 | ans_col += tb_length;
| ~~~~~~~~^~~~~~~~~~~~
match_pdict.c: In function 'vmatch_PDict3Parts_XStringSet':
match_pdict.c:392:65: note: 'ans_col' was declared here
392 | int tb_length, S_length, collapse0, i, j, match_count, *ans_col;
| ^~~~~~~
In function 'vcount_XStringSet_XStringSet',
inlined from 'vmatch_XStringSet_XStringSet' at match_pdict.c:542:10:
match_pdict.c:470:41: warning: 'ans_elt' may be used uninitialized [-Wmaybe-uninitialized]
470 | ans_elt += P_length;
| ~~~~~~~~^~~~~~~~~~~
match_pdict.c: In function 'vmatch_XStringSet_XStringSet':
match_pdict.c:441:64: note: 'ans_elt' was declared here
441 | int P_length, S_length, collapse0, i, j, match_count, *ans_elt;
| ^~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o
match_pdict_ACtree2.c: In function 'split_and_move_pointers':
match_pdict_ACtree2.c:1031:17: warning: variable 'node0' set but not used [-Wunused-but-set-variable]
1031 | ACnode *node0, *node1, *node2;
| ^~~~~
match_pdict_ACtree2.c: In function 'merge_pointers':
match_pdict_ACtree2.c:1076:17: warning: variable 'node0' set but not used [-Wunused-but-set-variable]
1076 | ACnode *node0, *node1, *node2;
| ^~~~~
match_pdict_ACtree2.c: At top level:
match_pdict_ACtree2.c:602:21: warning: 'a_nice_max_nodeextbuf_nelt' defined but not used [-Wunused-function]
602 | static unsigned int a_nice_max_nodeextbuf_nelt(int nnodes)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
match_pdict_ACtree2.c:139:13: warning: 'debug_node_counting_functions' defined but not used [-Wunused-function]
139 | static void debug_node_counting_functions(int maxdepth)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pdict_Twobit.c -o match_pdict_Twobit.o
In file included from /usr/include/R/Rdefines.h:41,
from /usr/lib/R/library/S4Vectors/include/S4Vectors_defines.h:18,
from /usr/lib/R/library/IRanges/include/IRanges_defines.h:18,
from ../inst/include/Biostrings_defines.h:18,
from Biostrings.h:1,
from match_pdict_Twobit.c:10:
In function 'Twobit_asLIST',
inlined from 'build_Twobit' at match_pdict_Twobit.c:145:2:
match_pdict_Twobit.c:75:27: warning: 'twobit_sign2pos' may be used uninitialized [-Wmaybe-uninitialized]
75 | PROTECT(ans_elt = new_XInteger_from_tag("XInteger", twobit_sign2pos));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/R/Rinternals.h:367:36: note: in definition of macro 'PROTECT'
367 | #define PROTECT(s) Rf_protect(s)
| ^
match_pdict_Twobit.c: In function 'build_Twobit':
match_pdict_Twobit.c:110:19: note: 'twobit_sign2pos' was declared here
110 | SEXP ans, twobit_sign2pos;
| ^~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_pdict_utils.c -o match_pdict_utils.o
match_pdict_utils.c: In function 'match_ppheadtail0':
match_pdict_utils.c:653:56: warning: unused variable 'ncol' [-Wunused-variable]
653 | int nelt, min_safe_tb_end, max_safe_tb_end, j, ncol;
| ^~~~
match_pdict_utils.c: In function 'match_ppheadtail':
match_pdict_utils.c:713:13: warning: unused variable 'nelt' [-Wunused-variable]
713 | int nelt, nkey0, nkey1, nkey2, i, key;
| ^~~~
match_pdict_utils.c: In function '_match_pdict_all_flanks':
match_pdict_utils.c:820:51: warning: unused variable 'subtotal_NFC' [-Wunused-variable]
820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL;
| ^~~~~~~~~~~~
match_pdict_utils.c:820:34: warning: unused variable 'total_NFC' [-Wunused-variable]
820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL;
| ^~~~~~~~~
match_pdict_utils.c:819:40: warning: unused variable 'NFC' [-Wunused-variable]
819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons
| ^~~
match_pdict_utils.c:819:33: warning: unused variable 'nloci' [-Wunused-variable]
819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons
| ^~~~~
match_pdict_utils.c:819:27: warning: unused variable 'ndup' [-Wunused-variable]
819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons
| ^~~~
match_pdict_utils.c: At top level:
match_pdict_utils.c:820:34: warning: 'total_NFC' defined but not used [-Wunused-variable]
820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL;
| ^~~~~~~~~
match_pdict_utils.c:820:51: warning: 'subtotal_NFC' defined but not used [-Wunused-variable]
820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL;
| ^~~~~~~~~~~~
match_pdict_utils.c:261:13: warning: 'match_headtail_by_loc' defined but not used [-Wunused-function]
261 | static void match_headtail_by_loc(const HeadTail *headtail,
| ^~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c match_reporting.c -o match_reporting.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c matchprobes.c -o matchprobes.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pmatchPattern.c -o pmatchPattern.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c read_fasta_files.c -o read_fasta_files.o
In function 'new_FASTAloaderExt',
inlined from 'read_fasta_files' at read_fasta_files.c:430:15:
read_fasta_files.c:186:16: warning: 'loader_ext.seq_elt_holder.ptr' may be used uninitialized [-Wmaybe-uninitialized]
186 | return loader_ext;
| ^~~~~~~~~~
read_fasta_files.c: In function 'read_fasta_files':
read_fasta_files.c:182:24: note: 'loader_ext' declared here
182 | FASTAloaderExt loader_ext;
| ^~~~~~~~~~
In function 'new_FASTAloaderExt',
inlined from 'read_fasta_files' at read_fasta_files.c:430:15:
read_fasta_files.c:186:16: warning: 'loader_ext.seq_elt_holder.length' may be used uninitialized [-Wmaybe-uninitialized]
186 | return loader_ext;
| ^~~~~~~~~~
read_fasta_files.c: In function 'read_fasta_files':
read_fasta_files.c:182:24: note: 'loader_ext' declared here
182 | FASTAloaderExt loader_ext;
| ^~~~~~~~~~
In function 'new_FASTAloaderExt',
inlined from 'read_fasta_blocks' at read_fasta_files.c:596:15:
read_fasta_files.c:186:16: warning: 'loader_ext.seq_elt_holder.ptr' is used uninitialized [-Wuninitialized]
186 | return loader_ext;
| ^~~~~~~~~~
read_fasta_files.c: In function 'read_fasta_blocks':
read_fasta_files.c:182:24: note: 'loader_ext' declared here
182 | FASTAloaderExt loader_ext;
| ^~~~~~~~~~
In function 'new_FASTAloaderExt',
inlined from 'read_fasta_blocks' at read_fasta_files.c:596:15:
read_fasta_files.c:186:16: warning: 'loader_ext.seq_elt_holder.length' is used uninitialized [-Wuninitialized]
186 | return loader_ext;
| ^~~~~~~~~~
read_fasta_files.c: In function 'read_fasta_blocks':
read_fasta_files.c:182:24: note: 'loader_ext' declared here
182 | FASTAloaderExt loader_ext;
| ^~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c read_fastq_files.c -o read_fastq_files.o
read_fastq_files.c: In function 'parse_FASTQ_file':
read_fastq_files.c:406:28: warning: 'dont_load' may be used uninitialized [-Wmaybe-uninitialized]
406 | if (dont_load || loader->new_qualid_hook == NULL)
| ^
read_fastq_files.c:309:26: note: 'dont_load' was declared here
309 | lineinrecno, dont_load;
| ^~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c replaceAt.c -o replaceAt.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c replace_letter_at.c -o replace_letter_at.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c strutils.c -o strutils.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c translate.c -o translate.o
In function 'translate',
inlined from 'DNAStringSet_translate' at translate.c:195:4:
translate.c:99:36: warning: 'if_non_ambig0' may be used uninitialized [-Wmaybe-uninitialized]
99 | if (if_non_ambig == TRANSLATE_ERROR) {
| ^
translate.c: In function 'DNAStringSet_translate':
translate.c:136:21: note: 'if_non_ambig0' was declared here
136 | int ncodes, if_non_ambig0, if_ambig0, ans_length, i, errcode;
| ^~~~~~~~~~~~~
In function 'translate',
inlined from 'DNAStringSet_translate' at translate.c:195:4:
translate.c:110:36: warning: 'if_ambig0' may be used uninitialized [-Wmaybe-uninitialized]
110 | if (if_ambig == TRANSLATE_ERROR) {
| ^
translate.c: In function 'DNAStringSet_translate':
translate.c:136:36: note: 'if_ambig0' was declared here
136 | int ncodes, if_non_ambig0, if_ambig0, ans_length, i, errcode;
| ^~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c unstrsplit_methods.c -o unstrsplit_methods.o
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c utils.c -o utils.o
utils.c: In function '_get_twobit_signature':
utils.c:157:16: warning: 'twobit_sign' may be used uninitialized [-Wmaybe-uninitialized]
157 | return twobit_sign;
| ^~~~~~~~~~~
utils.c:150:16: note: 'twobit_sign' was declared here
150 | int i, twobit_sign;
| ^~~~~~~~~~~
utils.c: In function '_get_twobit_signature_at':
utils.c:174:16: warning: 'twobit_sign' may be used uninitialized [-Wmaybe-uninitialized]
174 | return twobit_sign;
| ^~~~~~~~~~~
utils.c:164:19: note: 'twobit_sign' was declared here
164 | int i, j, twobit_sign;
| ^~~~~~~~~~~
gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib/R/library/S4Vectors/include' -I'/usr/lib/R/library/IRanges/include' -I'/usr/lib/R/library/XVector/include' -I/usr/local/include -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c xscat.c -o xscat.o
In file included from /usr/include/R/Rdefines.h:41,
from /usr/lib/R/library/S4Vectors/include/S4Vectors_defines.h:18,
from /usr/lib/R/library/IRanges/include/IRanges_defines.h:18,
from ../inst/include/Biostrings_defines.h:18,
from Biostrings.h:1,
from xscat.c:1:
xscat.c: In function 'XString_xscat':
/usr/include/R/Rdefines.h:91:33: warning: 'ans_length' may be used uninitialized [-Wmaybe-uninitialized]
91 | #define NEW_RAW(n) Rf_allocVector(RAWSXP,n)
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/R/Rinternals.h:367:36: note: in definition of macro 'PROTECT'
367 | #define PROTECT(s) Rf_protect(s)
| ^
xscat.c:38:27: note: in expansion of macro 'NEW_RAW'
38 | PROTECT(ans_tag = NEW_RAW(ans_length));
| ^~~~~~~
xscat.c:18:20: note: 'ans_length' was declared here
18 | int nargs, ans_length, tag_offset, j;
| ^~~~~~~~~~
xscat.c:52:23: warning: 'ans_classname' may be used uninitialized [-Wmaybe-uninitialized]
52 | PROTECT(ans = new_XRaw_from_tag(ans_classname, ans_tag));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/R/Rinternals.h:367:36: note: in definition of macro 'PROTECT'
367 | #define PROTECT(s) Rf_protect(s)
| ^
xscat.c:20:21: note: 'ans_classname' was declared here
20 | const char *ans_classname;
| ^~~~~~~~~~~~~
xscat.c: In function 'XStringSet_xscat':
/usr/include/R/Rdefines.h:85:33: warning: 'ans_length' may be used uninitialized [-Wmaybe-uninitialized]
85 | #define NEW_INTEGER(n) Rf_allocVector(INTSXP,n)
| ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/R/Rinternals.h:367:36: note: in definition of macro 'PROTECT'
367 | #define PROTECT(s) Rf_protect(s)
| ^
xscat.c:91:29: note: in expansion of macro 'NEW_INTEGER'
91 | PROTECT(ans_width = NEW_INTEGER(ans_length));
| ^~~~~~~~~~~
xscat.c:66:39: note: 'ans_length' was declared here
66 | int nargs, *arg_lengths, *ii, ans_length, i, j, *width;
| ^~~~~~~~~~
xscat.c:108:23: warning: 'ans_element_type' may be used uninitialized [-Wmaybe-uninitialized]
108 | PROTECT(ans = _alloc_XStringSet(ans_element_type, ans_width));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/R/Rinternals.h:367:36: note: in definition of macro 'PROTECT'
367 | #define PROTECT(s) Rf_protect(s)
| ^
xscat.c:68:21: note: 'ans_element_type' was declared here
68 | const char *ans_element_type;
| ^~~~~~~~~~~~~~~~
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib/R/lib -lR
installing to /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386/usr/lib/R/library/00LOCK-Biostrings/00new/Biostrings/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'twoWayAlphabetFrequencyByQuality' with signature '"QualityScaledXStringSet"': no definition for class "QualityScaledXStringSet"
Creating a new generic function for 'strsplit' in package 'Biostrings'
Creating a generic function for 'ls' from package 'base' in package 'Biostrings'
Creating a new generic function for 'pattern' in package 'Biostrings'
Creating a new generic function for 'offset' in package 'Biostrings'
** help
*** installing help indices
converting help for package 'Biostrings'
finding HTML links ... done
AAString-class html
AMINO_ACID_CODE html
AlignedXStringSet-class html
Biostrings-internals html
DNAString-class html
GENETIC_CODE html
HNF4alpha html
IUPAC_CODE_MAP html
InDel-class html
MIndex-class html
MaskedXString-class html
MultipleAlignment-class html
finding level-2 HTML links ... done
PDict-class html
PairwiseAlignments-class html
PairwiseAlignments-io html
QualityScaledXStringSet-class html
RNAString-class html
XString-class html
XStringPartialMatches-class html
XStringQuality-class html
XStringSet-class html
XStringSet-comparison html
XStringSet-io html
XStringSetList-class html
XStringViews-class html
align-utils html
chartr html
detail html
dinucleotideFrequencyTest html
findPalindromes html
getSeq html
gregexpr2 html
injectHardMask html
letter html
letterFrequency html
longestConsecutive html
lowlevel-matching html
maskMotif html
match-utils html
matchLRPatterns html
matchPDict-exact html
matchPDict-inexact html
matchPWM html
matchPattern html
matchProbePair html
matchprobes html
misc html
needwunsQS html
nucleotideFrequency html
padAndClip html
pairwiseAlignment html
phiX174Phage html
pid html
pmatchPattern html
replaceAt html
replaceLetterAt html
reverseComplement html
seqinfo html
stringDist html
substitution_matrices html
toComplex html
translate html
trimLRPatterns html
xscat html
yeastSEQCHR1 html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Biostrings)
+ test -d Biostrings/src
+ cd Biostrings/src
+ rm -f BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o Biostrings.so
+ rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386/usr/lib/R/library/R.css
+ rm -f /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386/usr/lib/R/library/Biostrings/doc/GenomeSearching.R
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.64.1-1.fc38 --unique-debug-suffix -2.64.1-1.fc38.i386 --unique-debug-src-base R-Biostrings-2.64.1-1.fc38.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Biostrings
extracting debug info from /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386/usr/lib/R/library/Biostrings/libs/Biostrings.so
original debug info size: 600kB, size after compression: 552kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
807 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.WoHRoa
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Biostrings
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: R-Biostrings-2.64.1-1.fc38.i686
Provides: R(Biostrings) = 2.64.1 R-Biostrings = 2.64.1-1.fc38 R-Biostrings(x86-32) = 2.64.1-1.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: R(ABI) = 4.2 R(BiocGenerics) >= 0.37.0 R(GenomeInfoDb) R(IRanges) >= 2.30.1 R(S4Vectors) >= 0.27.12 R(XVector) >= 0.29.2 R(crayon) R(grDevices) R(graphics) R(methods) R(stats) R(utils) R-core >= 4.0.0 libR.so libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.7) rtld(GNU_HASH)
Suggests: R(BSgenome) >= 1.13.14 R(BSgenome.Celegans.UCSC.ce2) >= 1.3.11 R(BSgenome.Dmelanogaster.UCSC.dm3) >= 1.3.11 R(BSgenome.Hsapiens.UCSC.hg18) R(GenomicFeatures) >= 1.3.14 R(RUnit) R(affy) >= 1.41.3 R(affydata) >= 1.11.5 R(drosophila2probe) R(hgu133aprobe) R(hgu95av2cdf) R(hgu95av2probe)
Enhances: R(Rmpi)
Processing files: R-Biostrings-devel-2.64.1-1.fc38.i686
Provides: R-Biostrings-devel = 2.64.1-1.fc38 R-Biostrings-devel(x86-32) = 2.64.1-1.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-Biostrings-debugsource-2.64.1-1.fc38.i686
Provides: R-Biostrings-debugsource = 2.64.1-1.fc38 R-Biostrings-debugsource(x86-32) = 2.64.1-1.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-Biostrings-debuginfo-2.64.1-1.fc38.i686
Provides: R-Biostrings-debuginfo = 2.64.1-1.fc38 R-Biostrings-debuginfo(x86-32) = 2.64.1-1.fc38 debuginfo(build-id) = 06798ccfa2691c9641ecece68da65b5341fe23b9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-Biostrings-debugsource(x86-32) = 2.64.1-1.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386
Wrote: /builddir/build/RPMS/R-Biostrings-debuginfo-2.64.1-1.fc38.i686.rpm
Wrote: /builddir/build/RPMS/R-Biostrings-debugsource-2.64.1-1.fc38.i686.rpm
Wrote: /builddir/build/RPMS/R-Biostrings-devel-2.64.1-1.fc38.i686.rpm
Wrote: /builddir/build/RPMS/R-Biostrings-2.64.1-1.fc38.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.tGQDIv
+ umask 022
+ cd /builddir/build/BUILD
+ cd Biostrings
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-1.fc38.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.73maRx
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf Biostrings Biostrings.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild R-Biostrings-2.64.1-1.fc38.src.rpm
Finish: build phase for R-Biostrings-2.64.1-1.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-i686-1671756994.049510/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-1.fc38.src.rpm) Config(child) 1 minutes 31 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool