Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c297' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5168138 --chroot fedora-rawhide-ppc64le --detached Version: 0.62 PID: 12786 Logging PID: 12787 Task: {'appstream': False, 'background': True, 'build_id': 5168138, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': '33bdcab4226f5c2a02e7ec7b561e9397017feec6', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bionetgen', 'package_version': '2.8.4-3', 'project_dirname': 'gcc-13-test', 'project_name': 'gcc-13-test', 'project_owner': 'jakub', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/', 'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch', 'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}], 'sandbox': 'jakub/gcc-13-test--jakub', 'source_json': {}, 'source_type': None, 'submitter': 'jakub', 'tags': [], 'task_id': '5168138-fedora-rawhide-ppc64le', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen /var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen', '/var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen'... Running: git checkout 33bdcab4226f5c2a02e7ec7b561e9397017feec6 cmd: ['git', 'checkout', '33bdcab4226f5c2a02e7ec7b561e9397017feec6'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen rc: 0 stdout: stderr: Note: switching to '33bdcab4226f5c2a02e7ec7b561e9397017feec6'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 33bdcab automatic import of bionetgen Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Reading sources specification file: sources INFO: Downloading bionetgen-BioNetGen-2.8.4.tar.gz INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.8.4.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/bionetgen/bionetgen-BioNetGen-2.8.4.tar.gz/md5/e26ad465557b02afad362a856dc9135d/bionetgen-BioNetGen-2.8.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 40.0M 100 40.0M 0 0 25.8M 0 0:00:01 0:00:01 --:--:-- 25.8M INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.8.4.tar.gz Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671780812.151845 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen/bionetgen.spec) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1671780812.151845/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 11 MB/s | 3.7 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 14 kB/s | 84 kB 00:05 fedora 15 MB/s | 60 MB 00:03 Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: dnf noarch 4.14.0-1.fc38 fedora 480 k dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k Installing dependencies: alternatives ppc64le 1.21-1.fc38 fedora 40 k audit-libs ppc64le 3.0.9-1.fc38 copr_base 131 k basesystem noarch 11-14.fc37 fedora 7.0 k bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M bzip2-libs ppc64le 1.0.8-12.fc37 fedora 47 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils ppc64le 9.1-8.fc38 fedora 1.4 M coreutils-common ppc64le 9.1-8.fc38 fedora 2.0 M crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl ppc64le 7.87.0-1.fc38 fedora 348 k cyrus-sasl-lib ppc64le 2.1.28-8.fc38 fedora 881 k dbus-libs ppc64le 1:1.14.4-1.fc38 fedora 176 k dnf-data noarch 4.14.0-1.fc38 fedora 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf ppc64le 0.188-3.fc38 fedora 205 k elfutils-libs ppc64le 0.188-3.fc38 fedora 291 k expat ppc64le 2.5.0-1.fc38 fedora 117 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-common noarch 38-0.6 fedora 21 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs ppc64le 5.42-4.fc37 fedora 688 k filesystem ppc64le 3.18-2.fc37 fedora 1.1 M findutils ppc64le 1:4.9.0-2.fc37 fedora 538 k gawk ppc64le 5.1.1-4.fc37 fedora 1.0 M gdbm-libs ppc64le 1:1.23-2.fc37 fedora 62 k glib2 ppc64le 2.74.1-2.fc38 fedora 2.9 M glibc ppc64le 2.36.9000-18.fc38 fedora 2.2 M glibc-common ppc64le 2.36.9000-18.fc38 fedora 322 k glibc-minimal-langpack ppc64le 2.36.9000-18.fc38 fedora 30 k gmp ppc64le 1:6.2.1-3.fc37 fedora 302 k gnupg2 ppc64le 2.3.8-1.fc38 fedora 2.7 M gnutls ppc64le 3.7.8-9.fc38 fedora 1.1 M gpgme ppc64le 1.17.1-3.fc38 fedora 229 k grep ppc64le 3.8-1.fc38 fedora 303 k ima-evm-utils ppc64le 1.4-6.fc37 fedora 66 k json-c ppc64le 0.16-3.fc38 fedora 46 k keyutils-libs ppc64le 1.6.1-5.fc37 fedora 32 k krb5-libs ppc64le 1.20.1-3.fc38 fedora 810 k libacl ppc64le 2.3.1-4.fc38 copr_base 26 k libarchive ppc64le 3.6.1-3.fc38 fedora 463 k libassuan ppc64le 2.5.5-5.fc37 fedora 70 k libattr ppc64le 2.5.1-5.fc38 copr_base 19 k libb2 ppc64le 0.98.1-7.fc37 fedora 26 k libblkid ppc64le 2.38.1-3.fc38 fedora 122 k libbrotli ppc64le 1.0.9-9.fc37 fedora 343 k libcap ppc64le 2.48-5.fc37 fedora 72 k libcap-ng ppc64le 0.8.3-4.fc38 fedora 33 k libcom_err ppc64le 1.46.5-3.fc37 fedora 26 k libcomps ppc64le 0.1.18-4.fc37 fedora 84 k libcurl ppc64le 7.87.0-1.fc38 fedora 334 k libdnf ppc64le 0.68.0-1.fc38 fedora 681 k libevent ppc64le 2.1.12-7.fc37 fedora 277 k libffi ppc64le 3.4.4-1.fc38 fedora 38 k libfsverity ppc64le 1.4-8.fc37 fedora 20 k libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k libgcrypt ppc64le 1.10.1-6.fc38 fedora 591 k libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k libgpg-error ppc64le 1.46-1.fc38 fedora 238 k libidn2 ppc64le 2.3.4-1.fc38 fedora 163 k libksba ppc64le 1.6.3-1.fc38 fedora 174 k libmodulemd ppc64le 2.14.0-4.fc37 fedora 221 k libmount ppc64le 2.38.1-3.fc38 fedora 154 k libnghttp2 ppc64le 1.51.0-1.fc38 fedora 84 k libnsl2 ppc64le 2.0.0-4.fc37 fedora 32 k libpsl ppc64le 0.21.1-6.fc37 fedora 65 k librepo ppc64le 1.15.1-1.fc38 fedora 103 k libreport-filesystem noarch 2.17.6-1.fc38 fedora 14 k libselinux ppc64le 3.4-6.fc38 fedora 99 k libsemanage ppc64le 3.4-6.fc38 fedora 131 k libsepol ppc64le 3.4-4.fc38 fedora 356 k libsigsegv ppc64le 2.14-3.fc37 fedora 28 k libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k libsolv ppc64le 0.7.22-3.fc37 fedora 467 k libssh ppc64le 0.10.4-2.fc38 fedora 235 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k libtasn1 ppc64le 4.19.0-1.fc38 fedora 80 k libtirpc ppc64le 1.3.3-0.fc37 fedora 108 k libunistring ppc64le 1.0-2.fc37 fedora 586 k libuuid ppc64le 2.38.1-3.fc38 fedora 29 k libverto ppc64le 0.3.2-4.fc37 fedora 22 k libxcrypt ppc64le 4.4.33-5.fc38 fedora 132 k libxml2 ppc64le 2.10.3-2.fc38 fedora 781 k libyaml ppc64le 0.2.5-8.fc37 fedora 70 k libzstd ppc64le 1.5.2-3.fc37 fedora 316 k lua-libs ppc64le 5.4.4-6.fc38 fedora 148 k lz4-libs ppc64le 1.9.3-5.fc37 fedora 89 k mpdecimal ppc64le 2.5.1-4.fc37 fedora 117 k mpfr ppc64le 4.1.1-2.fc38 fedora 608 k ncurses-base noarch 6.3-5.20221126.fc38 fedora 86 k ncurses-libs ppc64le 6.3-5.20221126.fc38 fedora 374 k nettle ppc64le 3.8-2.fc37 fedora 442 k npth ppc64le 1.6-10.fc38 fedora 24 k openldap ppc64le 2.6.3-1.fc38 fedora 287 k openssl-libs ppc64le 1:3.0.5-6.fc38 fedora 2.2 M p11-kit ppc64le 0.24.1-5.fc38 fedora 374 k p11-kit-trust ppc64le 0.24.1-5.fc38 fedora 149 k pcre2 ppc64le 10.40-1.fc37.1 fedora 240 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k popt ppc64le 1.19-1.fc38 fedora 71 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 ppc64le 3.11.1-1.fc38 fedora 27 k python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k python3-dbus ppc64le 1.3.2-1.fc38 fedora 162 k python3-distro noarch 1.8.0-1.fc38 fedora 49 k python3-dnf noarch 4.14.0-1.fc38 fedora 607 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k python3-gpg ppc64le 1.17.1-3.fc38 fedora 300 k python3-hawkey ppc64le 0.68.0-1.fc38 fedora 108 k python3-libcomps ppc64le 0.1.18-4.fc37 fedora 52 k python3-libdnf ppc64le 0.68.0-1.fc38 fedora 819 k python3-libs ppc64le 3.11.1-1.fc38 fedora 9.7 M python3-rpm ppc64le 4.18.0-8.fc38 fedora 101 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline ppc64le 8.2-2.fc38 fedora 228 k rpm ppc64le 4.18.0-8.fc38 fedora 568 k rpm-build-libs ppc64le 4.18.0-8.fc38 fedora 103 k rpm-libs ppc64le 4.18.0-8.fc38 fedora 355 k rpm-sequoia ppc64le 1.2.0-1.fc38 fedora 1.4 M rpm-sign-libs ppc64le 4.18.0-8.fc38 fedora 27 k sed ppc64le 4.8-11.fc37 fedora 313 k setup noarch 2.14.3-1.fc38 fedora 152 k shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k systemd-libs ppc64le 252.4-598.fc38 fedora 666 k tpm2-tss ppc64le 4.0.0-0.1.rc2.fc38 fedora 631 k tzdata noarch 2022g-1.fc38 fedora 716 k xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k zchunk-libs ppc64le 1.2.3-1.fc38 fedora 55 k zlib ppc64le 1.2.13-1.fc38 fedora 100 k Transaction Summary ========================================================================================================================== Install 137 Packages Total download size: 60 M Installed size: 284 M Downloading Packages: (1/137): libacl-2.3.1-4.fc38.ppc64le.rpm 115 kB/s | 26 kB 00:00 (2/137): audit-libs-3.0.9-1.fc38.ppc64le.rpm 517 kB/s | 131 kB 00:00 (3/137): libattr-2.5.1-5.fc38.ppc64le.rpm 763 kB/s | 19 kB 00:00 (4/137): bash-5.2.9-3.fc38.ppc64le.rpm 4.9 MB/s | 1.9 MB 00:00 (5/137): libgomp-13.0.0-0.4.fc38.ppc64le.rpm 1.2 MB/s | 314 kB 00:00 (6/137): libgcc-13.0.0-0.4.fc38.ppc64le.rpm 332 kB/s | 88 kB 00:00 (7/137): libstdc++-13.0.0-0.4.fc38.ppc64le.rpm 4.3 MB/s | 932 kB 00:00 (8/137): basesystem-11-14.fc37.noarch.rpm 48 kB/s | 7.0 kB 00:00 (9/137): alternatives-1.21-1.fc38.ppc64le.rpm 152 kB/s | 40 kB 00:00 (10/137): bzip2-libs-1.0.8-12.fc37.ppc64le.rpm 165 kB/s | 47 kB 00:00 (11/137): ca-certificates-2022.2.54-5.fc37.noar 1.7 MB/s | 829 kB 00:00 (12/137): crypto-policies-20221215-1.gita4c31a3 1.2 MB/s | 90 kB 00:00 (13/137): coreutils-9.1-8.fc38.ppc64le.rpm 2.8 MB/s | 1.4 MB 00:00 (14/137): curl-7.87.0-1.fc38.ppc64le.rpm 3.7 MB/s | 348 kB 00:00 (15/137): coreutils-common-9.1-8.fc38.ppc64le.r 4.3 MB/s | 2.0 MB 00:00 (16/137): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le. 8.0 MB/s | 881 kB 00:00 (17/137): dbus-libs-1.14.4-1.fc38.ppc64le.rpm 2.1 MB/s | 176 kB 00:00 (18/137): dnf-4.14.0-1.fc38.noarch.rpm 5.6 MB/s | 480 kB 00:00 (19/137): dnf-data-4.14.0-1.fc38.noarch.rpm 575 kB/s | 43 kB 00:00 (20/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 472 kB/s | 34 kB 00:00 (21/137): elfutils-default-yama-scope-0.188-3.f 216 kB/s | 15 kB 00:00 (22/137): elfutils-libelf-0.188-3.fc38.ppc64le. 2.5 MB/s | 205 kB 00:00 (23/137): elfutils-libs-0.188-3.fc38.ppc64le.rp 3.2 MB/s | 291 kB 00:00 (24/137): expat-2.5.0-1.fc38.ppc64le.rpm 1.5 MB/s | 117 kB 00:00 (25/137): fedora-gpg-keys-38-0.3.noarch.rpm 1.6 MB/s | 125 kB 00:00 (26/137): fedora-release-38-0.6.noarch.rpm 149 kB/s | 11 kB 00:00 (27/137): fedora-release-common-38-0.6.noarch.r 296 kB/s | 21 kB 00:00 (28/137): fedora-release-identity-basic-38-0.6. 157 kB/s | 11 kB 00:00 (29/137): fedora-repos-38-0.3.noarch.rpm 142 kB/s | 10 kB 00:00 (30/137): fedora-repos-rawhide-38-0.3.noarch.rp 137 kB/s | 9.7 kB 00:00 (31/137): file-libs-5.42-4.fc37.ppc64le.rpm 6.7 MB/s | 688 kB 00:00 (32/137): findutils-4.9.0-2.fc37.ppc64le.rpm 6.2 MB/s | 538 kB 00:00 (33/137): filesystem-3.18-2.fc37.ppc64le.rpm 7.7 MB/s | 1.1 MB 00:00 (34/137): gawk-5.1.1-4.fc37.ppc64le.rpm 9.0 MB/s | 1.0 MB 00:00 (35/137): gdbm-libs-1.23-2.fc37.ppc64le.rpm 847 kB/s | 62 kB 00:00 (36/137): glibc-common-2.36.9000-18.fc38.ppc64l 4.0 MB/s | 322 kB 00:00 (37/137): glib2-2.74.1-2.fc38.ppc64le.rpm 14 MB/s | 2.9 MB 00:00 (38/137): glibc-minimal-langpack-2.36.9000-18.f 380 kB/s | 30 kB 00:00 (39/137): glibc-2.36.9000-18.fc38.ppc64le.rpm 13 MB/s | 2.2 MB 00:00 (40/137): gmp-6.2.1-3.fc37.ppc64le.rpm 3.9 MB/s | 302 kB 00:00 (41/137): gnutls-3.7.8-9.fc38.ppc64le.rpm 12 MB/s | 1.1 MB 00:00 (42/137): gnupg2-2.3.8-1.fc38.ppc64le.rpm 19 MB/s | 2.7 MB 00:00 (43/137): gpgme-1.17.1-3.fc38.ppc64le.rpm 3.0 MB/s | 229 kB 00:00 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| 334 kB 00:00 (59/137): libdnf-0.68.0-1.fc38.ppc64le.rpm 7.8 MB/s | 681 kB 00:00 (60/137): libevent-2.1.12-7.fc37.ppc64le.rpm 3.5 MB/s | 277 kB 00:00 (61/137): libffi-3.4.4-1.fc38.ppc64le.rpm 530 kB/s | 38 kB 00:00 (62/137): libfsverity-1.4-8.fc37.ppc64le.rpm 269 kB/s | 20 kB 00:00 (63/137): libgcrypt-1.10.1-6.fc38.ppc64le.rpm 6.9 MB/s | 591 kB 00:00 (64/137): libgpg-error-1.46-1.fc38.ppc64le.rpm 2.9 MB/s | 238 kB 00:00 (65/137): libidn2-2.3.4-1.fc38.ppc64le.rpm 2.1 MB/s | 163 kB 00:00 (66/137): libksba-1.6.3-1.fc38.ppc64le.rpm 2.2 MB/s | 174 kB 00:00 (67/137): libmodulemd-2.14.0-4.fc37.ppc64le.rpm 2.8 MB/s | 221 kB 00:00 (68/137): libmount-2.38.1-3.fc38.ppc64le.rpm 2.0 MB/s | 154 kB 00:00 (69/137): libnghttp2-1.51.0-1.fc38.ppc64le.rpm 1.1 MB/s | 84 kB 00:00 (70/137): libnsl2-2.0.0-4.fc37.ppc64le.rpm 450 kB/s | 32 kB 00:00 (71/137): libpsl-0.21.1-6.fc37.ppc64le.rpm 879 kB/s | 65 kB 00:00 (72/137): librepo-1.15.1-1.fc38.ppc64le.rpm 1.4 MB/s | 103 kB 00:00 (73/137): 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python3-hawkey-0.68.0-1.fc38.ppc64le 1.4 MB/s | 108 kB 00:00 (117/137): python3-libcomps-0.1.18-4.fc37.ppc64 720 kB/s | 52 kB 00:00 (118/137): python3-libdnf-0.68.0-1.fc38.ppc64le 9.0 MB/s | 819 kB 00:00 (119/137): python3-rpm-4.18.0-8.fc38.ppc64le.rp 1.3 MB/s | 101 kB 00:00 (120/137): python3-six-1.16.0-8.fc37.noarch.rpm 570 kB/s | 42 kB 00:00 (121/137): readline-8.2-2.fc38.ppc64le.rpm 3.0 MB/s | 228 kB 00:00 (122/137): rpm-4.18.0-8.fc38.ppc64le.rpm 6.7 MB/s | 568 kB 00:00 (123/137): rpm-build-libs-4.18.0-8.fc38.ppc64le 1.4 MB/s | 103 kB 00:00 (124/137): rpm-libs-4.18.0-8.fc38.ppc64le.rpm 4.4 MB/s | 355 kB 00:00 (125/137): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm 14 MB/s | 1.4 MB 00:00 (126/137): rpm-sign-libs-4.18.0-8.fc38.ppc64le. 368 kB/s | 27 kB 00:00 (127/137): python3-libs-3.11.1-1.fc38.ppc64le.r 25 MB/s | 9.7 MB 00:00 (128/137): sed-4.8-11.fc37.ppc64le.rpm 4.0 MB/s | 313 kB 00:00 (129/137): setup-2.14.3-1.fc38.noarch.rpm 2.0 MB/s | 152 kB 00:00 (130/137): sqlite-libs-3.40.0-1.fc38.ppc64le.rp 8.5 MB/s | 776 kB 00:00 (131/137): shadow-utils-4.13-3.fc38.ppc64le.rpm 12 MB/s | 1.3 MB 00:00 (132/137): systemd-libs-252.4-598.fc38.ppc64le. 7.7 MB/s | 666 kB 00:00 (133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le. 7.2 MB/s | 631 kB 00:00 (134/137): xz-libs-5.2.9-1.fc38.ppc64le.rpm 1.3 MB/s | 104 kB 00:00 (135/137): tzdata-2022g-1.fc38.noarch.rpm 7.7 MB/s | 716 kB 00:00 (136/137): zchunk-libs-1.2.3-1.fc38.ppc64le.rpm 746 kB/s | 55 kB 00:00 (137/137): zlib-1.2.13-1.fc38.ppc64le.rpm 1.3 MB/s | 100 kB 00:00 -------------------------------------------------------------------------------- Total 12 MB/s | 60 MB 00:04 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.ppc64le 1/137 Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le 1/137 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Installing : tzdata-2022g-1.fc38.noarch 3/137 Installing : fedora-release-identity-basic-38-0.6.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 7/137 Installing : ncurses-base-6.3-5.20221126.fc38.noarch 8/137 Installing : libssh-config-0.10.4-2.fc38.noarch 9/137 Installing : libreport-filesystem-2.17.6-1.fc38.noarch 10/137 Installing : dnf-data-4.14.0-1.fc38.noarch 11/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-38-0.3.noarch 12/137 Installing : 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Installing : openldap-2.6.3-1.fc38.ppc64le 119/137 Installing : libcurl-7.87.0-1.fc38.ppc64le 120/137 Installing : gnupg2-2.3.8-1.fc38.ppc64le 121/137 Installing : gpgme-1.17.1-3.fc38.ppc64le 122/137 Installing : librepo-1.15.1-1.fc38.ppc64le 123/137 Installing : libdnf-0.68.0-1.fc38.ppc64le 124/137 Installing : python3-libdnf-0.68.0-1.fc38.ppc64le 125/137 Installing : python3-hawkey-0.68.0-1.fc38.ppc64le 126/137 Installing : python3-gpg-1.17.1-3.fc38.ppc64le 127/137 Installing : curl-7.87.0-1.fc38.ppc64le 128/137 Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 129/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 129/137 Installing : ima-evm-utils-1.4-6.fc37.ppc64le 130/137 Installing : rpm-sign-libs-4.18.0-8.fc38.ppc64le 131/137 Installing : python3-rpm-4.18.0-8.fc38.ppc64le 132/137 Installing : python3-dnf-4.14.0-1.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/137 Installing : dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 137/137 Installing : rpm-4.18.0-8.fc38.ppc64le 137/137 Running scriptlet: filesystem-3.18-2.fc37.ppc64le 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 137/137 Verifying : audit-libs-3.0.9-1.fc38.ppc64le 1/137 Verifying : bash-5.2.9-3.fc38.ppc64le 2/137 Verifying : libacl-2.3.1-4.fc38.ppc64le 3/137 Verifying : libattr-2.5.1-5.fc38.ppc64le 4/137 Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 5/137 Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 6/137 Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 7/137 Verifying : alternatives-1.21-1.fc38.ppc64le 8/137 Verifying : basesystem-11-14.fc37.noarch 9/137 Verifying : bzip2-libs-1.0.8-12.fc37.ppc64le 10/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 11/137 Verifying : coreutils-9.1-8.fc38.ppc64le 12/137 Verifying : coreutils-common-9.1-8.fc38.ppc64le 13/137 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 14/137 Verifying : curl-7.87.0-1.fc38.ppc64le 15/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le 16/137 Verifying : dbus-libs-1:1.14.4-1.fc38.ppc64le 17/137 Verifying : dnf-4.14.0-1.fc38.noarch 18/137 Verifying : dnf-data-4.14.0-1.fc38.noarch 19/137 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 20/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 21/137 Verifying : elfutils-libelf-0.188-3.fc38.ppc64le 22/137 Verifying : elfutils-libs-0.188-3.fc38.ppc64le 23/137 Verifying : expat-2.5.0-1.fc38.ppc64le 24/137 Verifying : fedora-gpg-keys-38-0.3.noarch 25/137 Verifying : fedora-release-38-0.6.noarch 26/137 Verifying : fedora-release-common-38-0.6.noarch 27/137 Verifying : fedora-release-identity-basic-38-0.6.noarch 28/137 Verifying : fedora-repos-38-0.3.noarch 29/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 30/137 Verifying : file-libs-5.42-4.fc37.ppc64le 31/137 Verifying : filesystem-3.18-2.fc37.ppc64le 32/137 Verifying : findutils-1:4.9.0-2.fc37.ppc64le 33/137 Verifying : gawk-5.1.1-4.fc37.ppc64le 34/137 Verifying : gdbm-libs-1:1.23-2.fc37.ppc64le 35/137 Verifying : glib2-2.74.1-2.fc38.ppc64le 36/137 Verifying : glibc-2.36.9000-18.fc38.ppc64le 37/137 Verifying : glibc-common-2.36.9000-18.fc38.ppc64le 38/137 Verifying : glibc-minimal-langpack-2.36.9000-18.fc38.ppc64le 39/137 Verifying : gmp-1:6.2.1-3.fc37.ppc64le 40/137 Verifying : gnupg2-2.3.8-1.fc38.ppc64le 41/137 Verifying : gnutls-3.7.8-9.fc38.ppc64le 42/137 Verifying : gpgme-1.17.1-3.fc38.ppc64le 43/137 Verifying : grep-3.8-1.fc38.ppc64le 44/137 Verifying : ima-evm-utils-1.4-6.fc37.ppc64le 45/137 Verifying : json-c-0.16-3.fc38.ppc64le 46/137 Verifying : keyutils-libs-1.6.1-5.fc37.ppc64le 47/137 Verifying : krb5-libs-1.20.1-3.fc38.ppc64le 48/137 Verifying : libarchive-3.6.1-3.fc38.ppc64le 49/137 Verifying : libassuan-2.5.5-5.fc37.ppc64le 50/137 Verifying : libb2-0.98.1-7.fc37.ppc64le 51/137 Verifying : libblkid-2.38.1-3.fc38.ppc64le 52/137 Verifying : libbrotli-1.0.9-9.fc37.ppc64le 53/137 Verifying : libcap-2.48-5.fc37.ppc64le 54/137 Verifying : libcap-ng-0.8.3-4.fc38.ppc64le 55/137 Verifying : libcom_err-1.46.5-3.fc37.ppc64le 56/137 Verifying : libcomps-0.1.18-4.fc37.ppc64le 57/137 Verifying : libcurl-7.87.0-1.fc38.ppc64le 58/137 Verifying : libdnf-0.68.0-1.fc38.ppc64le 59/137 Verifying : libevent-2.1.12-7.fc37.ppc64le 60/137 Verifying : libffi-3.4.4-1.fc38.ppc64le 61/137 Verifying : libfsverity-1.4-8.fc37.ppc64le 62/137 Verifying : libgcrypt-1.10.1-6.fc38.ppc64le 63/137 Verifying : libgpg-error-1.46-1.fc38.ppc64le 64/137 Verifying : libidn2-2.3.4-1.fc38.ppc64le 65/137 Verifying : libksba-1.6.3-1.fc38.ppc64le 66/137 Verifying : libmodulemd-2.14.0-4.fc37.ppc64le 67/137 Verifying : libmount-2.38.1-3.fc38.ppc64le 68/137 Verifying : libnghttp2-1.51.0-1.fc38.ppc64le 69/137 Verifying : libnsl2-2.0.0-4.fc37.ppc64le 70/137 Verifying : libpsl-0.21.1-6.fc37.ppc64le 71/137 Verifying : librepo-1.15.1-1.fc38.ppc64le 72/137 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 73/137 Verifying : libselinux-3.4-6.fc38.ppc64le 74/137 Verifying : libsemanage-3.4-6.fc38.ppc64le 75/137 Verifying : libsepol-3.4-4.fc38.ppc64le 76/137 Verifying : libsigsegv-2.14-3.fc37.ppc64le 77/137 Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 78/137 Verifying : libsolv-0.7.22-3.fc37.ppc64le 79/137 Verifying : libssh-0.10.4-2.fc38.ppc64le 80/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 81/137 Verifying : libtasn1-4.19.0-1.fc38.ppc64le 82/137 Verifying : libtirpc-1.3.3-0.fc37.ppc64le 83/137 Verifying : libunistring-1.0-2.fc37.ppc64le 84/137 Verifying : libuuid-2.38.1-3.fc38.ppc64le 85/137 Verifying : libverto-0.3.2-4.fc37.ppc64le 86/137 Verifying : libxcrypt-4.4.33-5.fc38.ppc64le 87/137 Verifying : libxml2-2.10.3-2.fc38.ppc64le 88/137 Verifying : libyaml-0.2.5-8.fc37.ppc64le 89/137 Verifying : libzstd-1.5.2-3.fc37.ppc64le 90/137 Verifying : lua-libs-5.4.4-6.fc38.ppc64le 91/137 Verifying : lz4-libs-1.9.3-5.fc37.ppc64le 92/137 Verifying : mpdecimal-2.5.1-4.fc37.ppc64le 93/137 Verifying : mpfr-4.1.1-2.fc38.ppc64le 94/137 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 95/137 Verifying : ncurses-libs-6.3-5.20221126.fc38.ppc64le 96/137 Verifying : nettle-3.8-2.fc37.ppc64le 97/137 Verifying : npth-1.6-10.fc38.ppc64le 98/137 Verifying : openldap-2.6.3-1.fc38.ppc64le 99/137 Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 100/137 Verifying : p11-kit-0.24.1-5.fc38.ppc64le 101/137 Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 102/137 Verifying : pcre2-10.40-1.fc37.1.ppc64le 103/137 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 104/137 Verifying : popt-1.19-1.fc38.ppc64le 105/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 106/137 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 107/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 108/137 Verifying : python3-3.11.1-1.fc38.ppc64le 109/137 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 110/137 Verifying : python3-dbus-1.3.2-1.fc38.ppc64le 111/137 Verifying : python3-distro-1.8.0-1.fc38.noarch 112/137 Verifying : python3-dnf-4.14.0-1.fc38.noarch 113/137 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 114/137 Verifying : python3-gpg-1.17.1-3.fc38.ppc64le 115/137 Verifying : python3-hawkey-0.68.0-1.fc38.ppc64le 116/137 Verifying : python3-libcomps-0.1.18-4.fc37.ppc64le 117/137 Verifying : python3-libdnf-0.68.0-1.fc38.ppc64le 118/137 Verifying : python3-libs-3.11.1-1.fc38.ppc64le 119/137 Verifying : python3-rpm-4.18.0-8.fc38.ppc64le 120/137 Verifying : python3-six-1.16.0-8.fc37.noarch 121/137 Verifying : readline-8.2-2.fc38.ppc64le 122/137 Verifying : rpm-4.18.0-8.fc38.ppc64le 123/137 Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 124/137 Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 125/137 Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 126/137 Verifying : rpm-sign-libs-4.18.0-8.fc38.ppc64le 127/137 Verifying : sed-4.8-11.fc37.ppc64le 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 130/137 Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 131/137 Verifying : systemd-libs-252.4-598.fc38.ppc64le 132/137 Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.ppc64le 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.ppc64le 136/137 Verifying : zlib-1.2.13-1.fc38.ppc64le 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.ppc64le audit-libs-3.0.9-1.fc38.ppc64le basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.ppc64le bzip2-libs-1.0.8-12.fc37.ppc64le ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le dbus-libs-1:1.14.4-1.fc38.ppc64le dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le expat-2.5.0-1.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc37.ppc64le filesystem-3.18-2.fc37.ppc64le findutils-1:4.9.0-2.fc37.ppc64le gawk-5.1.1-4.fc37.ppc64le gdbm-libs-1:1.23-2.fc37.ppc64le glib2-2.74.1-2.fc38.ppc64le glibc-2.36.9000-18.fc38.ppc64le glibc-common-2.36.9000-18.fc38.ppc64le glibc-minimal-langpack-2.36.9000-18.fc38.ppc64le gmp-1:6.2.1-3.fc37.ppc64le gnupg2-2.3.8-1.fc38.ppc64le gnutls-3.7.8-9.fc38.ppc64le gpgme-1.17.1-3.fc38.ppc64le grep-3.8-1.fc38.ppc64le ima-evm-utils-1.4-6.fc37.ppc64le json-c-0.16-3.fc38.ppc64le keyutils-libs-1.6.1-5.fc37.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libassuan-2.5.5-5.fc37.ppc64le libattr-2.5.1-5.fc38.ppc64le libb2-0.98.1-7.fc37.ppc64le libblkid-2.38.1-3.fc38.ppc64le libbrotli-1.0.9-9.fc37.ppc64le libcap-2.48-5.fc37.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libcom_err-1.46.5-3.fc37.ppc64le libcomps-0.1.18-4.fc37.ppc64le libcurl-7.87.0-1.fc38.ppc64le libdnf-0.68.0-1.fc38.ppc64le libevent-2.1.12-7.fc37.ppc64le libffi-3.4.4-1.fc38.ppc64le libfsverity-1.4-8.fc37.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libgcrypt-1.10.1-6.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libgpg-error-1.46-1.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le libksba-1.6.3-1.fc38.ppc64le libmodulemd-2.14.0-4.fc37.ppc64le libmount-2.38.1-3.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le libnsl2-2.0.0-4.fc37.ppc64le libpsl-0.21.1-6.fc37.ppc64le librepo-1.15.1-1.fc38.ppc64le libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.4-6.fc38.ppc64le libsemanage-3.4-6.fc38.ppc64le libsepol-3.4-4.fc38.ppc64le libsigsegv-2.14-3.fc37.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libsolv-0.7.22-3.fc37.ppc64le libssh-0.10.4-2.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc37.ppc64le libunistring-1.0-2.fc37.ppc64le libuuid-2.38.1-3.fc38.ppc64le libverto-0.3.2-4.fc37.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libyaml-0.2.5-8.fc37.ppc64le libzstd-1.5.2-3.fc37.ppc64le lua-libs-5.4.4-6.fc38.ppc64le lz4-libs-1.9.3-5.fc37.ppc64le mpdecimal-2.5.1-4.fc37.ppc64le mpfr-4.1.1-2.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le nettle-3.8-2.fc37.ppc64le npth-1.6-10.fc38.ppc64le openldap-2.6.3-1.fc38.ppc64le openssl-libs-1:3.0.5-6.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le pcre2-10.40-1.fc37.1.ppc64le pcre2-syntax-10.40-1.fc37.1.noarch popt-1.19-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.ppc64le python3-dateutil-1:2.8.2-4.fc37.noarch python3-dbus-1.3.2-1.fc38.ppc64le python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.1-3.fc38.ppc64le python3-hawkey-0.68.0-1.fc38.ppc64le python3-libcomps-0.1.18-4.fc37.ppc64le python3-libdnf-0.68.0-1.fc38.ppc64le python3-libs-3.11.1-1.fc38.ppc64le python3-rpm-4.18.0-8.fc38.ppc64le python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.ppc64le rpm-4.18.0-8.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le rpm-sign-libs-4.18.0-8.fc38.ppc64le sed-4.8-11.fc37.ppc64le setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.ppc64le zchunk-libs-1.2.3-1.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 10 kB/s | 3.0 kB 00:00 Copr repository 5.2 MB/s | 3.8 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 9.3 kB/s | 3.0 kB 00:00 fedora 25 kB/s | 6.7 kB 00:00 Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing group/module packages: bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M bzip2 ppc64le 1.0.8-12.fc37 fedora 53 k coreutils ppc64le 9.1-8.fc38 fedora 1.4 M cpio ppc64le 2.13-13.fc38 fedora 283 k diffutils ppc64le 3.8-3.fc37 fedora 389 k fedora-release-common noarch 38-0.6 fedora 21 k findutils ppc64le 1:4.9.0-2.fc37 fedora 538 k gawk ppc64le 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack ppc64le 2.36.9000-18.fc38 fedora 30 k grep ppc64le 3.8-1.fc38 fedora 303 k gzip ppc64le 1.12-2.fc37 fedora 170 k info ppc64le 7.0.1-1.fc38 fedora 199 k patch ppc64le 2.7.6-17.fc37 fedora 135 k redhat-rpm-config noarch 235-1.fc38 fedora 80 k rpm-build ppc64le 4.18.0-8.fc38 fedora 78 k sed ppc64le 4.8-11.fc37 fedora 313 k shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M tar ppc64le 2:1.34-5.fc38 fedora 914 k unzip ppc64le 6.0-58.fc38 fedora 188 k util-linux ppc64le 2.38.1-3.fc38 fedora 2.4 M which ppc64le 2.21-36.fc38 fedora 42 k xz ppc64le 5.2.9-1.fc38 fedora 310 k Installing dependencies: alternatives ppc64le 1.21-1.fc38 fedora 40 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs ppc64le 3.0.9-1.fc38 copr_base 131 k authselect ppc64le 1.4.2-1.fc38 copr_base 141 k authselect-libs ppc64le 1.4.2-1.fc38 copr_base 241 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils ppc64le 2.39-6.fc38 fedora 6.2 M binutils-gold ppc64le 2.39-6.fc38 fedora 1.1 M bzip2-libs ppc64le 1.0.8-12.fc37 fedora 47 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common ppc64le 9.1-8.fc38 fedora 2.0 M cracklib ppc64le 2.9.7-30.fc38 fedora 94 k crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl ppc64le 7.87.0-1.fc38 fedora 348 k cyrus-sasl-lib ppc64le 2.1.28-8.fc38 fedora 881 k debugedit ppc64le 5.0-5.fc37 fedora 80 k dwz ppc64le 0.15-1.fc38 fedora 142 k ed ppc64le 1.18-2.fc37 fedora 81 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils ppc64le 0.188-3.fc38 fedora 559 k elfutils-debuginfod-client ppc64le 0.188-3.fc38 fedora 41 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf ppc64le 0.188-3.fc38 fedora 205 k elfutils-libs ppc64le 0.188-3.fc38 fedora 291 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file ppc64le 5.42-4.fc37 fedora 49 k file-libs ppc64le 5.42-4.fc37 fedora 688 k filesystem ppc64le 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal ppc64le 12.1-10.fc38 fedora 3.7 M gdbm-libs ppc64le 1:1.23-2.fc37 fedora 62 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc ppc64le 2.36.9000-18.fc38 fedora 2.2 M glibc-common ppc64le 2.36.9000-18.fc38 fedora 322 k glibc-gconv-extra ppc64le 2.36.9000-18.fc38 fedora 1.9 M gmp ppc64le 1:6.2.1-3.fc37 fedora 302 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson ppc64le 2.13.1-5.fc37 fedora 50 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs ppc64le 1.6.1-5.fc37 fedora 32 k krb5-libs ppc64le 1.20.1-3.fc38 fedora 810 k libacl ppc64le 2.3.1-4.fc38 copr_base 26 k libarchive ppc64le 3.6.1-3.fc38 fedora 463 k libattr ppc64le 2.5.1-5.fc38 copr_base 19 k libblkid ppc64le 2.38.1-3.fc38 fedora 122 k libbrotli ppc64le 1.0.9-9.fc37 fedora 343 k libcap ppc64le 2.48-5.fc37 fedora 72 k libcap-ng ppc64le 0.8.3-4.fc38 fedora 33 k libcom_err ppc64le 1.46.5-3.fc37 fedora 26 k libcurl ppc64le 7.87.0-1.fc38 fedora 334 k libdb ppc64le 5.3.28-54.fc38 fedora 841 k libeconf ppc64le 0.4.0-4.fc37 fedora 30 k libevent ppc64le 2.1.12-7.fc37 fedora 277 k libfdisk ppc64le 2.38.1-3.fc38 fedora 176 k libffi ppc64le 3.4.4-1.fc38 fedora 38 k libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k libidn2 ppc64le 2.3.4-1.fc38 fedora 163 k libmount ppc64le 2.38.1-3.fc38 fedora 154 k libnghttp2 ppc64le 1.51.0-1.fc38 fedora 84 k libnsl2 ppc64le 2.0.0-4.fc37 fedora 32 k libpkgconf ppc64le 1.8.0-3.fc37 fedora 40 k libpsl ppc64le 0.21.1-6.fc37 fedora 65 k libpwquality ppc64le 1.4.4-11.fc37 fedora 119 k librtas ppc64le 2.0.3-1.fc38 fedora 67 k libselinux ppc64le 3.4-6.fc38 fedora 99 k libsemanage ppc64le 3.4-6.fc38 fedora 131 k libsepol ppc64le 3.4-4.fc38 fedora 356 k libsigsegv ppc64le 2.14-3.fc37 fedora 28 k libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k libssh ppc64le 0.10.4-2.fc38 fedora 235 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k libtasn1 ppc64le 4.19.0-1.fc38 fedora 80 k libtirpc ppc64le 1.3.3-0.fc37 fedora 108 k libunistring ppc64le 1.0-2.fc37 fedora 586 k libutempter ppc64le 1.2.1-7.fc37 fedora 27 k libuuid ppc64le 2.38.1-3.fc38 fedora 29 k libverto ppc64le 0.3.2-4.fc37 fedora 22 k libxcrypt ppc64le 4.4.33-5.fc38 fedora 132 k libxml2 ppc64le 2.10.3-2.fc38 fedora 781 k libzstd ppc64le 1.5.2-3.fc37 fedora 316 k lua-libs ppc64le 5.4.4-6.fc38 fedora 148 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs ppc64le 1.9.3-5.fc37 fedora 89 k mpfr ppc64le 4.1.1-2.fc38 fedora 608 k ncurses-base noarch 6.3-5.20221126.fc38 fedora 86 k ncurses-libs ppc64le 6.3-5.20221126.fc38 fedora 374 k nettle ppc64le 3.8-2.fc37 fedora 442 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap ppc64le 2.6.3-1.fc38 fedora 287 k openssl-libs ppc64le 1:3.0.5-6.fc38 fedora 2.2 M p11-kit ppc64le 0.24.1-5.fc38 fedora 374 k p11-kit-trust ppc64le 0.24.1-5.fc38 fedora 149 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam ppc64le 1.5.2-15.fc38 fedora 605 k pam-libs ppc64le 1.5.2-15.fc38 fedora 63 k pcre2 ppc64le 10.40-1.fc37.1 fedora 240 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k pkgconf ppc64le 1.8.0-3.fc37 fedora 43 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config ppc64le 1.8.0-3.fc37 fedora 10 k popt ppc64le 1.19-1.fc38 fedora 71 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-srpm-macros noarch 3.11-6.fc38 fedora 25 k qt5-srpm-macros noarch 5.15.7-1.fc38 fedora 7.9 k readline ppc64le 8.2-2.fc38 fedora 228 k rpm ppc64le 4.18.0-8.fc38 fedora 568 k rpm-build-libs ppc64le 4.18.0-8.fc38 fedora 103 k rpm-libs ppc64le 4.18.0-8.fc38 fedora 355 k rpm-sequoia ppc64le 1.2.0-1.fc38 fedora 1.4 M rpmautospec-rpm-macros noarch 0.3.1-1.fc38 fedora 8.8 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.3-1.fc38 fedora 152 k sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k systemd-libs ppc64le 252.4-598.fc38 fedora 666 k tzdata noarch 2022g-1.fc38 fedora 716 k util-linux-core ppc64le 2.38.1-3.fc38 fedora 515 k xxhash-libs ppc64le 0.8.1-3.fc37 fedora 38 k xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k zip ppc64le 3.0-35.fc38 fedora 267 k zlib ppc64le 1.2.13-1.fc38 fedora 100 k zstd ppc64le 1.5.2-3.fc37 fedora 466 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================== Install 154 Packages Total size: 57 M Installed size: 328 M Downloading Packages: [SKIPPED] audit-libs-3.0.9-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] authselect-1.4.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] bash-5.2.9-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libgcc-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libgomp-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libstdc++-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] alternatives-1.21-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] binutils-2.39-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.ppc64le.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.ppc64le.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.ppc64le.rpm: Already downloaded [SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.87.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] file-5.42-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-10.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-18.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-18.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-18.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-18.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] grep-3.8-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] info-7.0.1-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libcurl-7.87.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libdb-5.3.28-54.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libffi-3.4.4-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libmount-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libnghttp2-1.51.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libpwquality-1.4.4-11.fc37.ppc64le.rpm: Already downloaded [SKIPPED] librtas-2.0.3-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libselinux-3.4-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsemanage-3.4-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsepol-3.4-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-5.20221126.fc38.ppc64le.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-15.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-15.fc38.ppc64le.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc37.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc37.1.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] redhat-rpm-config-235-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.ppc64le.rpm: Already downloaded [SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] systemd-libs-252.4-598.fc38.ppc64le.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.ppc64le.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.ppc64le.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] xz-5.2.9-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] xz-libs-5.2.9-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zip-3.0-35.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zlib-1.2.13-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.ppc64le.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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106/154 Verifying : nettle-3.8-2.fc37.ppc64le 107/154 Verifying : nim-srpm-macros-3-7.fc37.noarch 108/154 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 109/154 Verifying : openblas-srpm-macros-2-12.fc37.noarch 110/154 Verifying : openldap-2.6.3-1.fc38.ppc64le 111/154 Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 112/154 Verifying : p11-kit-0.24.1-5.fc38.ppc64le 113/154 Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 114/154 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 115/154 Verifying : pam-1.5.2-15.fc38.ppc64le 116/154 Verifying : pam-libs-1.5.2-15.fc38.ppc64le 117/154 Verifying : patch-2.7.6-17.fc37.ppc64le 118/154 Verifying : pcre2-10.40-1.fc37.1.ppc64le 119/154 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 120/154 Verifying : perl-srpm-macros-1-47.fc38.noarch 121/154 Verifying : pkgconf-1.8.0-3.fc37.ppc64le 122/154 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 123/154 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.ppc64le 124/154 Verifying : popt-1.19-1.fc38.ppc64le 125/154 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 126/154 Verifying : python-srpm-macros-3.11-6.fc38.noarch 127/154 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 128/154 Verifying : readline-8.2-2.fc38.ppc64le 129/154 Verifying : redhat-rpm-config-235-1.fc38.noarch 130/154 Verifying : rpm-4.18.0-8.fc38.ppc64le 131/154 Verifying : rpm-build-4.18.0-8.fc38.ppc64le 132/154 Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 133/154 Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 134/154 Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 135/154 Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 136/154 Verifying : rust-srpm-macros-23-1.fc38.noarch 137/154 Verifying : sed-4.8-11.fc37.ppc64le 138/154 Verifying : setup-2.14.3-1.fc38.noarch 139/154 Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 140/154 Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 141/154 Verifying : systemd-libs-252.4-598.fc38.ppc64le 142/154 Verifying : tar-2:1.34-5.fc38.ppc64le 143/154 Verifying : tzdata-2022g-1.fc38.noarch 144/154 Verifying : unzip-6.0-58.fc38.ppc64le 145/154 Verifying : util-linux-2.38.1-3.fc38.ppc64le 146/154 Verifying : util-linux-core-2.38.1-3.fc38.ppc64le 147/154 Verifying : which-2.21-36.fc38.ppc64le 148/154 Verifying : xxhash-libs-0.8.1-3.fc37.ppc64le 149/154 Verifying : xz-5.2.9-1.fc38.ppc64le 150/154 Verifying : xz-libs-5.2.9-1.fc38.ppc64le 151/154 Verifying : zip-3.0-35.fc38.ppc64le 152/154 Verifying : zlib-1.2.13-1.fc38.ppc64le 153/154 Verifying : zstd-1.5.2-3.fc37.ppc64le 154/154 Installed: alternatives-1.21-1.fc38.ppc64le ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-1.fc38.ppc64le authselect-1.4.2-1.fc38.ppc64le authselect-libs-1.4.2-1.fc38.ppc64le basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.ppc64le binutils-2.39-6.fc38.ppc64le binutils-gold-2.39-6.fc38.ppc64le bzip2-1.0.8-12.fc37.ppc64le bzip2-libs-1.0.8-12.fc37.ppc64le ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le cpio-2.13-13.fc38.ppc64le cracklib-2.9.7-30.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le debugedit-5.0-5.fc37.ppc64le diffutils-3.8-3.fc37.ppc64le dwz-0.15-1.fc38.ppc64le ed-1.18-2.fc37.ppc64le efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.ppc64le elfutils-debuginfod-client-0.188-3.fc38.ppc64le elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc37.ppc64le file-libs-5.42-4.fc37.ppc64le filesystem-3.18-2.fc37.ppc64le findutils-1:4.9.0-2.fc37.ppc64le fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.ppc64le gdb-minimal-12.1-10.fc38.ppc64le gdbm-libs-1:1.23-2.fc37.ppc64le ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-18.fc38.ppc64le glibc-common-2.36.9000-18.fc38.ppc64le glibc-gconv-extra-2.36.9000-18.fc38.ppc64le glibc-minimal-langpack-2.36.9000-18.fc38.ppc64le gmp-1:6.2.1-3.fc37.ppc64le gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.ppc64le gzip-1.12-2.fc37.ppc64le info-7.0.1-1.fc38.ppc64le jansson-2.13.1-5.fc37.ppc64le kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libattr-2.5.1-5.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le libbrotli-1.0.9-9.fc37.ppc64le libcap-2.48-5.fc37.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libcom_err-1.46.5-3.fc37.ppc64le libcurl-7.87.0-1.fc38.ppc64le libdb-5.3.28-54.fc38.ppc64le libeconf-0.4.0-4.fc37.ppc64le libevent-2.1.12-7.fc37.ppc64le libfdisk-2.38.1-3.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le libnsl2-2.0.0-4.fc37.ppc64le libpkgconf-1.8.0-3.fc37.ppc64le libpsl-0.21.1-6.fc37.ppc64le libpwquality-1.4.4-11.fc37.ppc64le librtas-2.0.3-1.fc38.ppc64le libselinux-3.4-6.fc38.ppc64le libsemanage-3.4-6.fc38.ppc64le libsepol-3.4-4.fc38.ppc64le libsigsegv-2.14-3.fc37.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libssh-0.10.4-2.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc37.ppc64le libunistring-1.0-2.fc37.ppc64le libutempter-1.2.1-7.fc37.ppc64le libuuid-2.38.1-3.fc38.ppc64le libverto-0.3.2-4.fc37.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libzstd-1.5.2-3.fc37.ppc64le lua-libs-5.4.4-6.fc38.ppc64le lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc37.ppc64le mpfr-4.1.1-2.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le nettle-3.8-2.fc37.ppc64le nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.ppc64le openssl-libs-1:3.0.5-6.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.ppc64le pam-libs-1.5.2-15.fc38.ppc64le patch-2.7.6-17.fc37.ppc64le pcre2-10.40-1.fc37.1.ppc64le pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc37.ppc64le pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.ppc64le popt-1.19-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-6.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.ppc64le redhat-rpm-config-235-1.fc38.noarch rpm-4.18.0-8.fc38.ppc64le rpm-build-4.18.0-8.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le rpmautospec-rpm-macros-0.3.1-1.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc37.ppc64le setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le tar-2:1.34-5.fc38.ppc64le tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.ppc64le util-linux-2.38.1-3.fc38.ppc64le util-linux-core-2.38.1-3.fc38.ppc64le which-2.21-36.fc38.ppc64le xxhash-libs-0.8.1-3.fc37.ppc64le xz-5.2.9-1.fc38.ppc64le xz-libs-5.2.9-1.fc38.ppc64le zip-3.0-35.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le zstd-1.5.2-3.fc37.ppc64le Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: pkgconf-pkg-config-1.8.0-3.fc37.ppc64le systemd-libs-252.4-598.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le glibc-common-2.36.9000-18.fc38.ppc64le zip-3.0-35.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch lua-libs-5.4.4-6.fc38.ppc64le readline-8.2-2.fc38.ppc64le file-5.42-4.fc37.ppc64le rpm-4.18.0-8.fc38.ppc64le patch-2.7.6-17.fc37.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le util-linux-core-2.38.1-3.fc38.ppc64le kernel-srpm-macros-1.0-15.fc37.noarch fedora-repos-38-0.3.noarch alternatives-1.21-1.fc38.ppc64le xz-5.2.9-1.fc38.ppc64le fedora-repos-rawhide-38-0.3.noarch zstd-1.5.2-3.fc37.ppc64le pam-1.5.2-15.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch elfutils-debuginfod-client-0.188-3.fc38.ppc64le gnat-srpm-macros-4-16.fc37.noarch ghc-srpm-macros-1.5.0-7.fc37.noarch libfdisk-2.38.1-3.fc38.ppc64le coreutils-9.1-8.fc38.ppc64le openssl-libs-3.0.5-6.fc38.ppc64le authselect-libs-1.4.2-1.fc38.ppc64le util-linux-2.38.1-3.fc38.ppc64le libtirpc-1.3.3-0.fc37.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le fpc-srpm-macros-1.3-6.fc37.noarch perl-srpm-macros-1-47.fc38.noarch gdbm-libs-1.23-2.fc37.ppc64le redhat-rpm-config-235-1.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch elfutils-libs-0.188-3.fc38.ppc64le libbrotli-1.0.9-9.fc37.ppc64le setup-2.14.3-1.fc38.noarch libuuid-2.38.1-3.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le cracklib-2.9.7-30.fc38.ppc64le filesystem-3.18-2.fc37.ppc64le libmount-2.38.1-3.fc38.ppc64le jansson-2.13.1-5.fc37.ppc64le ansible-srpm-macros-1-8.1.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le fedora-release-38-0.6.noarch krb5-libs-1.20.1-3.fc38.ppc64le package-notes-srpm-macros-0.5-6.fc38.noarch gpg-pubkey-5323552a-6112bcdc xz-libs-5.2.9-1.fc38.ppc64le rpm-build-4.18.0-8.fc38.ppc64le glibc-2.36.9000-18.fc38.ppc64le binutils-2.39-6.fc38.ppc64le tzdata-2022g-1.fc38.noarch libzstd-1.5.2-3.fc37.ppc64le binutils-gold-2.39-6.fc38.ppc64le openblas-srpm-macros-2-12.fc37.noarch gzip-1.12-2.fc37.ppc64le fonts-srpm-macros-2.0.5-10.fc38.noarch cyrus-sasl-lib-2.1.28-8.fc38.ppc64le qt5-srpm-macros-5.15.7-1.fc38.noarch lz4-libs-1.9.3-5.fc37.ppc64le libattr-2.5.1-5.fc38.ppc64le pcre2-syntax-10.40-1.fc37.1.noarch glibc-minimal-langpack-2.36.9000-18.fc38.ppc64le debugedit-5.0-5.fc37.ppc64le elfutils-default-yama-scope-0.188-3.fc38.noarch grep-3.8-1.fc38.ppc64le bzip2-1.0.8-12.fc37.ppc64le fedora-release-identity-basic-38-0.6.noarch fedora-gpg-keys-38-0.3.noarch keyutils-libs-1.6.1-5.fc37.ppc64le openldap-2.6.3-1.fc38.ppc64le shadow-utils-4.13-3.fc38.ppc64le xxhash-libs-0.8.1-3.fc37.ppc64le glibc-gconv-extra-2.36.9000-18.fc38.ppc64le basesystem-11-14.fc37.noarch lua-srpm-macros-1-7.fc37.noarch rust-srpm-macros-23-1.fc38.noarch elfutils-0.188-3.fc38.ppc64le librtas-2.0.3-1.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le pkgconf-1.8.0-3.fc37.ppc64le rpmautospec-rpm-macros-0.3.1-1.fc38.noarch sed-4.8-11.fc37.ppc64le libpkgconf-1.8.0-3.fc37.ppc64le libeconf-0.4.0-4.fc37.ppc64le libcap-2.48-5.fc37.ppc64le libverto-0.3.2-4.fc37.ppc64le cpio-2.13-13.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le bzip2-libs-1.0.8-12.fc37.ppc64le gpg-pubkey-eb10b464-6202d9c6 libutempter-1.2.1-7.fc37.ppc64le libssh-0.10.4-2.fc38.ppc64le findutils-4.9.0-2.fc37.ppc64le tar-1.34-5.fc38.ppc64le libdb-5.3.28-54.fc38.ppc64le gmp-6.2.1-3.fc37.ppc64le gdb-minimal-12.1-10.fc38.ppc64le authselect-1.4.2-1.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le bash-5.2.9-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le ocaml-srpm-macros-7-2.fc37.noarch pkgconf-m4-1.8.0-3.fc37.noarch libffi-3.4.4-1.fc38.ppc64le libcom_err-1.46.5-3.fc37.ppc64le fedora-release-common-38-0.6.noarch libselinux-3.4-6.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le go-srpm-macros-3.2.0-1.fc38.noarch libunistring-1.0-2.fc37.ppc64le audit-libs-3.0.9-1.fc38.ppc64le pam-libs-1.5.2-15.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le file-libs-5.42-4.fc37.ppc64le python-srpm-macros-3.11-6.fc38.noarch libgcc-13.0.0-0.4.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le efi-srpm-macros-5-6.fc37.noarch libevent-2.1.12-7.fc37.ppc64le libnsl2-2.0.0-4.fc37.ppc64le pcre2-10.40-1.fc37.1.ppc64le popt-1.19-1.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch libxcrypt-4.4.33-5.fc38.ppc64le gawk-5.1.1-4.fc37.ppc64le unzip-6.0-58.fc38.ppc64le libsepol-3.4-4.fc38.ppc64le dwz-0.15-1.fc38.ppc64le libsemanage-3.4-6.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch nim-srpm-macros-3-7.fc37.noarch curl-7.87.0-1.fc38.ppc64le libstdc++-13.0.0-0.4.fc38.ppc64le info-7.0.1-1.fc38.ppc64le libpsl-0.21.1-6.fc37.ppc64le which-2.21-36.fc38.ppc64le nettle-3.8-2.fc37.ppc64le ed-1.18-2.fc37.ppc64le libsigsegv-2.14-3.fc37.ppc64le diffutils-3.8-3.fc37.ppc64le libpwquality-1.4.4-11.fc37.ppc64le Start: buildsrpm Start: rpmbuild -bs sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1670716800 Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-3.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-jrc4ebq3/bionetgen/bionetgen.spec) Config(child) 1 minutes 28 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671780812.151845 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1671780812.151845/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1671780812.151845/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 9.9 kB/s | 3.0 kB 00:00 Additional repo https_jakub_fedorapeople_org_fe 8.6 kB/s | 3.0 kB 00:00 fedora 24 kB/s | 6.7 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bionetgen-2.8.4-3.fc38.src.rpm Start: build setup for bionetgen-2.8.4-3.fc38.src.rpm sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1670716800 Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-3.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 kB/s | 3.0 kB 00:00 Additional repo https_jakub_fedorapeople_org_fe 9.7 kB/s | 3.0 kB 00:00 fedora 25 kB/s | 6.7 kB 00:00 Dependencies resolved. ============================================================================================================== Package Arch Version Repository Size ============================================================================================================== Installing: cmake ppc64le 3.25.1-1.fc38 fedora 6.7 M gcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 M gcc-c++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 12 M gcc-gfortran ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M make ppc64le 1:4.3-11.fc37 fedora 554 k perl-Carp noarch 1.52-489.fc37 fedora 29 k perl-Class-Struct noarch 0.66-492.fc38 fedora 25 k perl-Data-Dumper ppc64le 2.184-490.fc37 fedora 58 k perl-Exporter noarch 5.77-489.fc37 fedora 31 k perl-File-Basename noarch 2.85-492.fc38 fedora 20 k perl-FindBin noarch 1.53-492.fc38 fedora 17 k perl-Getopt-Long noarch 1:2.54-1.fc38 fedora 60 k perl-IO ppc64le 1.50-492.fc38 fedora 95 k perl-IPC-Open3 noarch 1.22-492.fc38 fedora 26 k perl-Math-Complex noarch 1.59-492.fc38 fedora 50 k perl-POSIX ppc64le 2.03-492.fc38 fedora 121 k perl-PathTools ppc64le 3.84-489.fc37 fedora 90 k perl-Scalar-List-Utils ppc64le 5:1.63-489.fc38 fedora 76 k perl-Symbol noarch 1.09-492.fc38 fedora 17 k perl-constant noarch 1.33-490.fc37 fedora 23 k perl-generators noarch 1.15-1.fc38 fedora 16 k perl-interpreter ppc64le 4:5.36.0-492.fc38 fedora 75 k perl-lib ppc64le 0.65-492.fc38 fedora 18 k perl-libs ppc64le 4:5.36.0-492.fc38 fedora 2.3 M perl-vars noarch 1.05-492.fc38 fedora 16 k Installing dependencies: annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k annobin-plugin-gcc ppc64le 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 890 k cmake-data noarch 3.25.1-1.fc38 fedora 2.2 M cmake-filesystem ppc64le 3.25.1-1.fc38 fedora 16 k cmake-rpm-macros noarch 3.25.1-1.fc38 fedora 16 k cpp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 9.8 M emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k expat ppc64le 2.5.0-1.fc38 fedora 117 k gc ppc64le 8.2.2-1.fc38 fedora 121 k gcc-plugin-annobin ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 32 k glibc-devel ppc64le 2.36.9000-18.fc38 fedora 546 k groff-base ppc64le 1.22.4-10.fc37 fedora 1.1 M guile22 ppc64le 2.2.7-6.fc37 fedora 6.6 M jsoncpp ppc64le 1.9.5-3.fc37 fedora 101 k kernel-headers ppc64le 6.1.0-1.fc38 fedora 1.5 M libasan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 477 k libatomic ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 19 k libb2 ppc64le 0.98.1-7.fc37 fedora 26 k libgfortran ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 597 k libmpc ppc64le 1.2.1-5.fc37 fedora 85 k libquadmath ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 195 k libquadmath-devel ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 20 k libstdc++-devel ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M libtool-ltdl ppc64le 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 41 k libubsan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 234 k libuv ppc64le 1:1.44.2-2.fc37 fedora 161 k libxcrypt-devel ppc64le 4.4.33-5.fc38 fedora 30 k mpdecimal ppc64le 2.5.1-4.fc37 fedora 117 k ncurses ppc64le 6.3-5.20221126.fc38 fedora 421 k perl-B ppc64le 1.83-492.fc38 fedora 188 k perl-DynaLoader ppc64le 1.52-492.fc38 fedora 29 k perl-Encode ppc64le 4:3.19-492.fc38 fedora 1.7 M perl-Errno ppc64le 1.36-492.fc38 fedora 18 k perl-Fcntl ppc64le 1.15-492.fc38 fedora 24 k perl-Fedora-VSP noarch 0.001-30.fc38 fedora 23 k perl-File-Path noarch 2.18-489.fc37 fedora 35 k perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k perl-File-stat noarch 1.12-492.fc38 fedora 20 k perl-Getopt-Std noarch 1.13-492.fc38 fedora 19 k perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k perl-MIME-Base64 ppc64le 3.16-489.fc37 fedora 31 k perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k perl-SelectSaver noarch 1.02-492.fc38 fedora 15 k perl-Socket ppc64le 4:2.036-1.fc38 fedora 56 k perl-Storable ppc64le 1:3.26-489.fc37 fedora 101 k perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k perl-if noarch 0.61.000-492.fc38 fedora 17 k perl-macros noarch 4:5.36.0-492.fc38 fedora 14 k perl-mro ppc64le 1.26-492.fc38 fedora 32 k perl-overload noarch 1.35-492.fc38 fedora 49 k perl-overloading noarch 0.02-492.fc38 fedora 16 k perl-parent noarch 1:0.239-1.fc38 fedora 14 k perl-podlators noarch 1:5.00-1.fc38 fedora 127 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 ppc64le 3.11.1-1.fc38 fedora 27 k python3-libs ppc64le 3.11.1-1.fc38 fedora 9.7 M rhash ppc64le 1.4.3-1.fc38 fedora 205 k vim-filesystem noarch 2:9.0.1054-1.fc38 fedora 19 k Transaction Summary ============================================================================================================== Install 91 Packages Total size: 107 M Total download size: 36 M Installed size: 389 M Downloading Packages: [SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cpp-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gcc-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libasan-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libatomic-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libubsan-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.25.1-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gc-8.2.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-devel-2.36.9000-18.fc38.ppc64le.rpm: Already downloaded [SKIPPED] groff-base-1.22.4-10.fc37.ppc64le.rpm: Already downloaded [SKIPPED] guile22-2.2.7-6.fc37.ppc64le.rpm: Already downloaded [SKIPPED] kernel-headers-6.1.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libb2-0.98.1-7.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libuv-1.44.2-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.33-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] make-4.3-11.fc37.ppc64le.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-4.fc37.ppc64le.rpm: Already downloaded [SKIPPED] ncurses-6.3-5.20221126.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-B-1.83-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.184-490.fc37.ppc64le.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.52-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-Errno-1.36-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.54-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.50-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-489.fc37.ppc64le.rpm: Already downloaded [SKIPPED] perl-POSIX-2.03-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-PathTools-3.84-489.fc37.ppc64le.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.036-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-Storable-3.26-489.fc37.ppc64le.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.36.0-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-libs-5.36.0-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-mro-1.26-492.fc38.ppc64le.rpm: Already downloaded [SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.239-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-5.00-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-22.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-65.5.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-3.11.1-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] python3-libs-3.11.1-1.fc38.ppc64le.rpm: Already downloaded (74/91): libgfortran-13.0.0-0.4.fc38.ppc64le.rp 1.3 MB/s | 597 kB 00:00 (75/91): libquadmath-13.0.0-0.4.fc38.ppc64le.rp 3.8 MB/s | 195 kB 00:00 (76/91): libquadmath-devel-13.0.0-0.4.fc38.ppc6 449 kB/s | 20 kB 00:00 (77/91): gcc-gfortran-13.0.0-0.4.fc38.ppc64le.r 15 MB/s | 11 MB 00:00 (78/91): gcc-c++-13.0.0-0.4.fc38.ppc64le.rpm 15 MB/s | 12 MB 00:00 (79/91): libstdc++-devel-13.0.0-0.4.fc38.ppc64l 9.4 MB/s | 2.4 MB 00:00 (80/91): cmake-rpm-macros-3.25.1-1.fc38.noarch. 48 kB/s | 16 kB 00:00 (81/91): jsoncpp-1.9.5-3.fc37.ppc64le.rpm 789 kB/s | 101 kB 00:00 (82/91): perl-Fedora-VSP-0.001-30.fc38.noarch.r 259 kB/s | 23 kB 00:00 (83/91): cmake-data-3.25.1-1.fc38.noarch.rpm 3.5 MB/s | 2.2 MB 00:00 (84/91): perl-FindBin-1.53-492.fc38.noarch.rpm 197 kB/s | 17 kB 00:00 (85/91): cmake-3.25.1-1.fc38.ppc64le.rpm 8.8 MB/s | 6.7 MB 00:00 (86/91): perl-Math-Complex-1.59-492.fc38.noarch 547 kB/s | 50 kB 00:00 (87/91): perl-generators-1.15-1.fc38.noarch.rpm 243 kB/s | 16 kB 00:00 (88/91): perl-lib-0.65-492.fc38.ppc64le.rpm 397 kB/s | 18 kB 00:00 (89/91): perl-macros-5.36.0-492.fc38.noarch.rpm 295 kB/s | 14 kB 00:00 (90/91): rhash-1.4.3-1.fc38.ppc64le.rpm 3.1 MB/s | 205 kB 00:00 (91/91): vim-filesystem-9.0.1054-1.fc38.noarch. 407 kB/s | 19 kB 00:00 -------------------------------------------------------------------------------- Total 16 MB/s | 36 MB 00:02 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.2.1-5.fc37.ppc64le 1/91 Installing : libquadmath-13.0.0-0.4.fc38.ppc64le 2/91 Installing : expat-2.5.0-1.fc38.ppc64le 3/91 Installing : cmake-filesystem-3.25.1-1.fc38.ppc64le 4/91 Installing : libgfortran-13.0.0-0.4.fc38.ppc64le 5/91 Installing : cpp-13.0.0-0.4.fc38.ppc64le 6/91 Installing : vim-filesystem-2:9.0.1054-1.fc38.noarch 7/91 Installing : rhash-1.4.3-1.fc38.ppc64le 8/91 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 9/91 Installing : python-pip-wheel-22.3.1-1.fc38.noarch 10/91 Installing : ncurses-6.3-5.20221126.fc38.ppc64le 11/91 Installing : mpdecimal-2.5.1-4.fc37.ppc64le 12/91 Installing : libuv-1:1.44.2-2.fc37.ppc64le 13/91 Installing : libb2-0.98.1-7.fc37.ppc64le 14/91 Installing : python3-3.11.1-1.fc38.ppc64le 15/91 Installing : python3-libs-3.11.1-1.fc38.ppc64le 16/91 Installing : cmake-rpm-macros-3.25.1-1.fc38.noarch 17/91 Installing : kernel-headers-6.1.0-1.fc38.ppc64le 18/91 Installing : libxcrypt-devel-4.4.33-5.fc38.ppc64le 19/91 Installing : glibc-devel-2.36.9000-18.fc38.ppc64le 20/91 Installing : jsoncpp-1.9.5-3.fc37.ppc64le 21/91 Running scriptlet: groff-base-1.22.4-10.fc37.ppc64le 22/91 Installing : groff-base-1.22.4-10.fc37.ppc64le 22/91 Running scriptlet: groff-base-1.22.4-10.fc37.ppc64le 22/91 Installing : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 23/91 Installing : perl-if-0.61.000-492.fc38.noarch 24/91 Installing : perl-Time-Local-2:1.300-489.fc37.noarch 25/91 Installing : perl-File-Path-2.18-489.fc37.noarch 26/91 Installing : perl-Pod-Escapes-1:1.07-489.fc37.noarch 27/91 Installing : perl-Class-Struct-0.66-492.fc38.noarch 28/91 Installing : perl-POSIX-2.03-492.fc38.ppc64le 29/91 Installing : perl-Term-ANSIColor-5.01-490.fc37.noarch 30/91 Installing : perl-IPC-Open3-1.22-492.fc38.noarch 31/91 Installing : perl-HTTP-Tiny-0.082-1.fc37.noarch 32/91 Installing : perl-File-Temp-1:0.231.100-489.fc37.noarch 33/91 Installing : perl-Term-Cap-1.17-489.fc37.noarch 34/91 Installing : perl-Pod-Simple-1:3.43-490.fc37.noarch 35/91 Installing : perl-Socket-4:2.036-1.fc38.ppc64le 36/91 Installing : perl-SelectSaver-1.02-492.fc38.noarch 37/91 Installing : perl-Symbol-1.09-492.fc38.noarch 38/91 Installing : perl-File-stat-1.12-492.fc38.noarch 39/91 Installing : perl-podlators-1:5.00-1.fc38.noarch 40/91 Installing : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 41/91 Installing : perl-Fcntl-1.15-492.fc38.ppc64le 42/91 Installing : perl-Text-ParseWords-3.31-489.fc37.noarch 43/91 Installing : perl-mro-1.26-492.fc38.ppc64le 44/91 Installing : perl-IO-1.50-492.fc38.ppc64le 45/91 Installing : perl-overloading-0.02-492.fc38.noarch 46/91 Installing : perl-Pod-Usage-4:2.03-3.fc37.noarch 47/91 Installing : perl-Errno-1.36-492.fc38.ppc64le 48/91 Installing : perl-File-Basename-2.85-492.fc38.noarch 49/91 Installing : perl-Getopt-Std-1.13-492.fc38.noarch 50/91 Installing : perl-MIME-Base64-3.16-489.fc37.ppc64le 51/91 Installing : 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libgfortran-13.0.0-0.4.fc38.ppc64le libmpc-1.2.1-5.fc37.ppc64le libquadmath-13.0.0-0.4.fc38.ppc64le libquadmath-devel-13.0.0-0.4.fc38.ppc64le libstdc++-devel-13.0.0-0.4.fc38.ppc64le libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le libubsan-13.0.0-0.4.fc38.ppc64le libuv-1:1.44.2-2.fc37.ppc64le libxcrypt-devel-4.4.33-5.fc38.ppc64le make-1:4.3-11.fc37.ppc64le mpdecimal-2.5.1-4.fc37.ppc64le ncurses-6.3-5.20221126.fc38.ppc64le perl-B-1.83-492.fc38.ppc64le perl-Carp-1.52-489.fc37.noarch perl-Class-Struct-0.66-492.fc38.noarch perl-Data-Dumper-2.184-490.fc37.ppc64le perl-DynaLoader-1.52-492.fc38.ppc64le perl-Encode-4:3.19-492.fc38.ppc64le perl-Errno-1.36-492.fc38.ppc64le perl-Exporter-5.77-489.fc37.noarch perl-Fcntl-1.15-492.fc38.ppc64le perl-Fedora-VSP-0.001-30.fc38.noarch perl-File-Basename-2.85-492.fc38.noarch perl-File-Path-2.18-489.fc37.noarch perl-File-Temp-1:0.231.100-489.fc37.noarch perl-File-stat-1.12-492.fc38.noarch perl-FindBin-1.53-492.fc38.noarch perl-Getopt-Long-1:2.54-1.fc38.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc37.noarch perl-IO-1.50-492.fc38.ppc64le perl-IPC-Open3-1.22-492.fc38.noarch perl-MIME-Base64-3.16-489.fc37.ppc64le perl-Math-Complex-1.59-492.fc38.noarch perl-POSIX-2.03-492.fc38.ppc64le perl-PathTools-3.84-489.fc37.ppc64le perl-Pod-Escapes-1:1.07-489.fc37.noarch perl-Pod-Perldoc-3.28.01-490.fc37.noarch perl-Pod-Simple-1:3.43-490.fc37.noarch perl-Pod-Usage-4:2.03-3.fc37.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.ppc64le perl-SelectSaver-1.02-492.fc38.noarch perl-Socket-4:2.036-1.fc38.ppc64le perl-Storable-1:3.26-489.fc37.ppc64le perl-Symbol-1.09-492.fc38.noarch perl-Term-ANSIColor-5.01-490.fc37.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch perl-Time-Local-2:1.300-489.fc37.noarch perl-constant-1.33-490.fc37.noarch perl-generators-1.15-1.fc38.noarch perl-if-0.61.000-492.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.ppc64le perl-lib-0.65-492.fc38.ppc64le perl-libs-4:5.36.0-492.fc38.ppc64le perl-macros-4:5.36.0-492.fc38.noarch perl-mro-1.26-492.fc38.ppc64le perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.239-1.fc38.noarch perl-podlators-1:5.00-1.fc38.noarch perl-vars-1.05-492.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.ppc64le python3-libs-3.11.1-1.fc38.ppc64le rhash-1.4.3-1.fc38.ppc64le vim-filesystem-2:9.0.1054-1.fc38.noarch Complete! Finish: build setup for bionetgen-2.8.4-3.fc38.src.rpm Start: rpmbuild bionetgen-2.8.4-3.fc38.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1670716800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HEpOyR + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-2.8.4 + /usr/bin/mkdir -p bionetgen-2.8.4 + cd bionetgen-2.8.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bionetgen-BioNetGen-2.8.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd bionetgen-BioNetGen-2.8.4 ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4 ~/build/BUILD/bionetgen-2.8.4 + rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.zip + tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3 cvode-2.6.0/README cvode-2.6.0/INSTALL_NOTES cvode-2.6.0/LICENSE cvode-2.6.0/Makefile.in cvode-2.6.0/configure.ac cvode-2.6.0/acinclude.m4 cvode-2.6.0/config.hin cvode-2.6.0/configure cvode-2.6.0/CMakeLists.txt cvode-2.6.0/config/config.guess cvode-2.6.0/config/config.sub cvode-2.6.0/config/install-sh cvode-2.6.0/config/mkinstalldirs cvode-2.6.0/config/rminstalldirs cvode-2.6.0/config/ltmain.sh cvode-2.6.0/config/mod_c.m4 cvode-2.6.0/config/mod_fortran.m4 cvode-2.6.0/config/cust_general.m4 cvode-2.6.0/config/CheckFortranFunctionExists.cmake cvode-2.6.0/config/SundialsFortran.cmake cvode-2.6.0/config/SundialsLapack.cmake cvode-2.6.0/config/SundialsMPIC.cmake cvode-2.6.0/config/SundialsMPIF.cmake cvode-2.6.0/config/FindLAPACK.cmake cvode-2.6.0/config/FindBLAS.cmake cvode-2.6.0/config/FindMPI.cmake cvode-2.6.0/bin/sundials-config.in cvode-2.6.0/bin/fortran-update.in cvode-2.6.0/bin/makefile-update.in cvode-2.6.0/include/sundials/sundials_config.in cvode-2.6.0/include/sundials/sundials_types.h cvode-2.6.0/include/sundials/sundials_math.h cvode-2.6.0/include/sundials/sundials_nvector.h cvode-2.6.0/include/sundials/sundials_fnvector.h cvode-2.6.0/include/sundials/sundials_dense.h cvode-2.6.0/include/sundials/sundials_direct.h cvode-2.6.0/include/sundials/sundials_band.h cvode-2.6.0/include/sundials/sundials_lapack.h cvode-2.6.0/include/sundials/sundials_spgmr.h cvode-2.6.0/include/sundials/sundials_spbcgs.h cvode-2.6.0/include/sundials/sundials_sptfqmr.h cvode-2.6.0/include/sundials/sundials_iterative.h cvode-2.6.0/include/nvector/nvector_serial.h cvode-2.6.0/include/nvector/nvector_parallel.h cvode-2.6.0/src/sundials/README cvode-2.6.0/src/sundials/Makefile.in cvode-2.6.0/src/sundials/CMakeLists.txt cvode-2.6.0/src/sundials/sundials_math.c cvode-2.6.0/src/sundials/sundials_nvector.c cvode-2.6.0/src/sundials/sundials_dense.c cvode-2.6.0/src/sundials/sundials_direct.c cvode-2.6.0/src/sundials/sundials_band.c cvode-2.6.0/src/sundials/sundials_spgmr.c cvode-2.6.0/src/sundials/sundials_spbcgs.c cvode-2.6.0/src/sundials/sundials_sptfqmr.c cvode-2.6.0/src/sundials/sundials_iterative.c cvode-2.6.0/src/nvec_ser/README cvode-2.6.0/src/nvec_ser/Makefile.in cvode-2.6.0/src/nvec_ser/CMakeLists.txt cvode-2.6.0/src/nvec_ser/fnvector_serial.h cvode-2.6.0/src/nvec_ser/nvector_serial.c cvode-2.6.0/src/nvec_ser/fnvector_serial.c cvode-2.6.0/src/nvec_par/README cvode-2.6.0/src/nvec_par/Makefile.in cvode-2.6.0/src/nvec_par/CMakeLists.txt cvode-2.6.0/src/nvec_par/fnvector_parallel.h cvode-2.6.0/src/nvec_par/nvector_parallel.c cvode-2.6.0/src/nvec_par/fnvector_parallel.c cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in cvode-2.6.0/examples/templates/makefile_serial_C_ex.in cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in cvode-2.6.0/doc/cvode/cv_guide.pdf cvode-2.6.0/doc/cvode/cv_examples.pdf cvode-2.6.0/include/cvode/cvode.h cvode-2.6.0/include/cvode/cvode_direct.h cvode-2.6.0/include/cvode/cvode_dense.h cvode-2.6.0/include/cvode/cvode_band.h cvode-2.6.0/include/cvode/cvode_lapack.h cvode-2.6.0/include/cvode/cvode_diag.h cvode-2.6.0/include/cvode/cvode_spgmr.h cvode-2.6.0/include/cvode/cvode_spbcgs.h cvode-2.6.0/include/cvode/cvode_sptfqmr.h cvode-2.6.0/include/cvode/cvode_spils.h cvode-2.6.0/include/cvode/cvode_bandpre.h cvode-2.6.0/include/cvode/cvode_bbdpre.h cvode-2.6.0/src/cvode/LICENSE cvode-2.6.0/src/cvode/README cvode-2.6.0/src/cvode/Makefile.in cvode-2.6.0/src/cvode/CMakeLists.txt cvode-2.6.0/src/cvode/cvode.c cvode-2.6.0/src/cvode/cvode_io.c cvode-2.6.0/src/cvode/cvode_direct.c cvode-2.6.0/src/cvode/cvode_dense.c cvode-2.6.0/src/cvode/cvode_band.c cvode-2.6.0/src/cvode/cvode_lapack.c cvode-2.6.0/src/cvode/cvode_diag.c cvode-2.6.0/src/cvode/cvode_spils.c cvode-2.6.0/src/cvode/cvode_spgmr.c cvode-2.6.0/src/cvode/cvode_spbcgs.c cvode-2.6.0/src/cvode/cvode_sptfqmr.c cvode-2.6.0/src/cvode/cvode_bandpre.c cvode-2.6.0/src/cvode/cvode_bbdpre.c cvode-2.6.0/src/cvode/cvode_impl.h cvode-2.6.0/src/cvode/cvode_direct_impl.h cvode-2.6.0/src/cvode/cvode_diag_impl.h cvode-2.6.0/src/cvode/cvode_spils_impl.h cvode-2.6.0/src/cvode/cvode_bandpre_impl.h cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h cvode-2.6.0/src/cvode/fcmix/Makefile.in cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt cvode-2.6.0/src/cvode/fcmix/fcvode.c cvode-2.6.0/src/cvode/fcmix/fcvewt.c cvode-2.6.0/src/cvode/fcmix/fcvpreco.c cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c cvode-2.6.0/src/cvode/fcmix/fcvband.c cvode-2.6.0/src/cvode/fcmix/fcvdense.c cvode-2.6.0/src/cvode/fcmix/fcvlapack.c cvode-2.6.0/src/cvode/fcmix/fcvlapband.c cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c cvode-2.6.0/src/cvode/fcmix/fcvbp.c cvode-2.6.0/src/cvode/fcmix/fcvbbd.c cvode-2.6.0/src/cvode/fcmix/fcvroot.c cvode-2.6.0/src/cvode/fcmix/fcvode.h cvode-2.6.0/src/cvode/fcmix/fcvbp.h cvode-2.6.0/src/cvode/fcmix/fcvbbd.h cvode-2.6.0/src/cvode/fcmix/fcvroot.h cvode-2.6.0/examples/cvode/serial/README cvode-2.6.0/examples/cvode/serial/Makefile.in cvode-2.6.0/examples/cvode/serial/CMakeLists.txt cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out cvode-2.6.0/examples/cvode/fcmix_serial/README cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out cvode-2.6.0/examples/cvode/parallel/README cvode-2.6.0/examples/cvode/parallel/Makefile.in cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/README cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out + tar -xvf bng2/libsource/muparser_v2_2_4.tar.gz -C bng2/Network3 muparser_v2_2_4/._Changes.txt muparser_v2_2_4/Changes.txt muparser_v2_2_4/._Install.txt muparser_v2_2_4/Install.txt muparser_v2_2_4/._License.txt muparser_v2_2_4/License.txt muparser_v2_2_4/._Makefile.in muparser_v2_2_4/Makefile.in muparser_v2_2_4/._build muparser_v2_2_4/build/ muparser_v2_2_4/build/._autoconf muparser_v2_2_4/build/autoconf/ muparser_v2_2_4/build/._bakefiles muparser_v2_2_4/build/bakefiles/ muparser_v2_2_4/build/._makefile.mingw muparser_v2_2_4/build/makefile.mingw muparser_v2_2_4/build/._makefile.vc muparser_v2_2_4/build/makefile.vc muparser_v2_2_4/build/._msvc2013 muparser_v2_2_4/build/msvc2013/ muparser_v2_2_4/build/._obj muparser_v2_2_4/build/obj/ muparser_v2_2_4/build/msvc2013/._muparser.sln muparser_v2_2_4/build/msvc2013/muparser.sln muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj.filters muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj.filters muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj.filters muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj.filters muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj.filters muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj.filters muparser_v2_2_4/build/bakefiles/._Bakefiles.bkgen muparser_v2_2_4/build/bakefiles/Bakefiles.bkgen muparser_v2_2_4/build/bakefiles/._howto.txt muparser_v2_2_4/build/bakefiles/howto.txt muparser_v2_2_4/build/bakefiles/._muparser.bkl muparser_v2_2_4/build/bakefiles/muparser.bkl muparser_v2_2_4/build/bakefiles/._presets muparser_v2_2_4/build/bakefiles/presets/ muparser_v2_2_4/build/bakefiles/presets/._debugopt.bkl muparser_v2_2_4/build/bakefiles/presets/debugopt.bkl muparser_v2_2_4/build/bakefiles/presets/._setbuilddir.bkl muparser_v2_2_4/build/bakefiles/presets/setbuilddir.bkl muparser_v2_2_4/build/bakefiles/presets/._sharedopt.bkl muparser_v2_2_4/build/bakefiles/presets/sharedopt.bkl muparser_v2_2_4/build/bakefiles/presets/._unicodeopt.bkl muparser_v2_2_4/build/bakefiles/presets/unicodeopt.bkl muparser_v2_2_4/build/autoconf/._aclocal.m4 muparser_v2_2_4/build/autoconf/aclocal.m4 muparser_v2_2_4/build/autoconf/._acregen.sh muparser_v2_2_4/build/autoconf/acregen.sh muparser_v2_2_4/build/autoconf/._autoconf_inc.m4 muparser_v2_2_4/build/autoconf/autoconf_inc.m4 muparser_v2_2_4/build/autoconf/._bakefile-presets.m4 muparser_v2_2_4/build/autoconf/bakefile-presets.m4 muparser_v2_2_4/build/autoconf/._config.guess muparser_v2_2_4/build/autoconf/config.guess muparser_v2_2_4/build/autoconf/._config.sub muparser_v2_2_4/build/autoconf/config.sub muparser_v2_2_4/build/autoconf/._configure.ac muparser_v2_2_4/build/autoconf/configure.ac muparser_v2_2_4/build/autoconf/._install-sh muparser_v2_2_4/build/autoconf/install-sh muparser_v2_2_4/build/autoconf/._muparser.pc.in muparser_v2_2_4/build/autoconf/muparser.pc.in muparser_v2_2_4/._configure muparser_v2_2_4/configure muparser_v2_2_4/._docs muparser_v2_2_4/docs/ muparser_v2_2_4/docs/._Doxyfile muparser_v2_2_4/docs/Doxyfile muparser_v2_2_4/docs/._muparser_doc.html muparser_v2_2_4/docs/muparser_doc.html muparser_v2_2_4/._include muparser_v2_2_4/include/ muparser_v2_2_4/include/._muParser.h muparser_v2_2_4/include/muParser.h muparser_v2_2_4/include/._muParserBase.h muparser_v2_2_4/include/muParserBase.h muparser_v2_2_4/include/._muParserBytecode.h muparser_v2_2_4/include/muParserBytecode.h muparser_v2_2_4/include/._muParserCallback.h muparser_v2_2_4/include/muParserCallback.h muparser_v2_2_4/include/._muParserDef.h muparser_v2_2_4/include/muParserDef.h muparser_v2_2_4/include/._muParserDLL.h muparser_v2_2_4/include/muParserDLL.h muparser_v2_2_4/include/._muParserError.h muparser_v2_2_4/include/muParserError.h muparser_v2_2_4/include/._muParserFixes.h muparser_v2_2_4/include/muParserFixes.h muparser_v2_2_4/include/._muParserInt.h muparser_v2_2_4/include/muParserInt.h muparser_v2_2_4/include/._muParserStack.h muparser_v2_2_4/include/muParserStack.h muparser_v2_2_4/include/._muParserTemplateMagic.h muparser_v2_2_4/include/muParserTemplateMagic.h muparser_v2_2_4/include/._muParserTest.h muparser_v2_2_4/include/muParserTest.h muparser_v2_2_4/include/._muParserToken.h muparser_v2_2_4/include/muParserToken.h muparser_v2_2_4/include/._muParserTokenReader.h muparser_v2_2_4/include/muParserTokenReader.h muparser_v2_2_4/._lib muparser_v2_2_4/lib/ muparser_v2_2_4/lib/._Readme.txt muparser_v2_2_4/lib/Readme.txt muparser_v2_2_4/._samples muparser_v2_2_4/samples/ muparser_v2_2_4/samples/._example1 muparser_v2_2_4/samples/example1/ muparser_v2_2_4/samples/._example2 muparser_v2_2_4/samples/example2/ muparser_v2_2_4/samples/example2/._example2.c muparser_v2_2_4/samples/example2/example2.c muparser_v2_2_4/samples/example2/._muparser32.dll muparser_v2_2_4/samples/example2/muparser32.dll muparser_v2_2_4/samples/example2/._muparser32.lib muparser_v2_2_4/samples/example2/muparser32.lib muparser_v2_2_4/samples/example2/._muparser64.dll muparser_v2_2_4/samples/example2/muparser64.dll muparser_v2_2_4/samples/example2/._muparser64.lib muparser_v2_2_4/samples/example2/muparser64.lib muparser_v2_2_4/samples/example2/._muparserd32.dll muparser_v2_2_4/samples/example2/muparserd32.dll muparser_v2_2_4/samples/example2/._muparserd32.lib muparser_v2_2_4/samples/example2/muparserd32.lib muparser_v2_2_4/samples/example2/._muparserd64.dll muparser_v2_2_4/samples/example2/muparserd64.dll muparser_v2_2_4/samples/example2/._muparserd64.lib muparser_v2_2_4/samples/example2/muparserd64.lib muparser_v2_2_4/samples/example2/._Readme.txt muparser_v2_2_4/samples/example2/Readme.txt muparser_v2_2_4/samples/example1/._example1.cpp muparser_v2_2_4/samples/example1/example1.cpp muparser_v2_2_4/._src muparser_v2_2_4/src/ muparser_v2_2_4/src/._muParser.cpp muparser_v2_2_4/src/muParser.cpp muparser_v2_2_4/src/._muParserBase.cpp muparser_v2_2_4/src/muParserBase.cpp muparser_v2_2_4/src/._muParserBytecode.cpp muparser_v2_2_4/src/muParserBytecode.cpp muparser_v2_2_4/src/._muParserCallback.cpp muparser_v2_2_4/src/muParserCallback.cpp muparser_v2_2_4/src/._muParserDLL.cpp muparser_v2_2_4/src/muParserDLL.cpp muparser_v2_2_4/src/._muParserError.cpp muparser_v2_2_4/src/muParserError.cpp muparser_v2_2_4/src/._muParserInt.cpp muparser_v2_2_4/src/muParserInt.cpp muparser_v2_2_4/src/._muParserTest.cpp muparser_v2_2_4/src/muParserTest.cpp muparser_v2_2_4/src/._muParserTokenReader.cpp muparser_v2_2_4/src/muParserTokenReader.cpp Patch #0 (bionetgen-fix_linker.patch): + echo 'Patch #0 (bionetgen-fix_linker.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file bng2/Network3/CMakeLists.txt Patch #1 (bionetgen-fix_cmake_minimum.patch): + echo 'Patch #1 (bionetgen-fix_cmake_minimum.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file bng2/Network3/CMakeLists.txt patching file bng2/Network3/cvode-2.6.0/CMakeLists.txt Patch #2 (bionetgen-cmake-c99.patch): + echo 'Patch #2 (bionetgen-cmake-c99.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .c99 --fuzz=0 patching file bng2/Network3/cvode-2.6.0/config/SundialsFortran.cmake + rm -f bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz + popd ~/build/BUILD/bionetgen-2.8.4 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.81fovz ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 ~/build/BUILD/bionetgen-2.8.4 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.8.4 + pushd bionetgen-BioNetGen-2.8.4/bng2/Network3 + cd muparser_v2_2_4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build/autoconf/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build/autoconf/config.sub ++ basename ./build/autoconf/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build/autoconf/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build/autoconf/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build/autoconf/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build/autoconf/config.guess ++ basename ./build/autoconf/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build/autoconf/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build/autoconf/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure + ./configure --build=powerpc64le-redhat-linux-gnu --host=powerpc64le-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared=no --enable-static=yes --enable-samples=no configure: WARNING: unrecognized options: --enable-static checking build system type... powerpc64le-redhat-linux-gnu checking host system type... powerpc64le-redhat-linux-gnu checking target system type... powerpc64le-redhat-linux-gnu checking for gawk... gawk checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking for powerpc64le-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for powerpc64le-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for the --enable-debug option... no checking for the --enable-shared option... no checking for the --enable-samples option... no checking whether we are using the Intel C compiler... no checking whether we are using the Intel C++ compiler... no checking whether we are using the Sun C++ compiler... no checking for powerpc64le-redhat-linux-gnu-ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for powerpc64le-redhat-linux-gnu-ar... no checking for ar... ar checking for powerpc64le-redhat-linux-gnu-strip... no checking for strip... strip checking for powerpc64le-redhat-linux-gnu-nm... no checking for nm... nm checking for command to install directories... /usr/bin/install -c -d checking if make is GNU make... egrep: warning: egrep is obsolescent; using grep -E yes checking for dependency tracking method... disabled configure: creating ./config.status config.status: creating Makefile config.status: creating build/autoconf/muparser.pc ---------------------------------------------------------------- Configuration for muparser 2.2.4 successfully completed. Summary of main configuration settings for muparser: configure: WARNING: unrecognized options: --enable-static - STATIC mode - RELEASE build - SAMPLES disabled Now, just run make. ---------------------------------------------------------------- + /usr/bin/make -O -j5 V=1 VERBOSE=1 g++ -c -o muParser_lib_muParserDLL.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserDLL.cpp g++ -c -o muParser_lib_muParserCallback.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserCallback.cpp g++ -c -o muParser_lib_muParserError.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserError.cpp g++ -c -o muParser_lib_muParserBytecode.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserBytecode.cpp In file included from ./include/muParserBytecode.h:35, from ./src/muParserBytecode.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserError.h:34, from ./include/muParserBytecode.h:34: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserBytecode.cpp: In member function 'void mu::ParserByteCode::AddOp(mu::ECmdCode)': ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLE' not handled in switch [-Wswitch] 213 | switch(a_Oprt) | ^ ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmGE' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmNEQ' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmEQ' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLT' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmGT' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLAND' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLOR' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmASSIGN' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmBO' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmBC' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmIF' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmELSE' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmENDIF' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmARG_SEP' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVAR' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVAL' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW2' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW3' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW4' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARMUL' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmPOW2' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC_STR' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC_BULK' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmSTRING' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_BIN' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_POSTFIX' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_INFIX' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmEND' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmUNKNOWN' not handled in switch [-Wswitch] g++ -c -o muParser_lib_muParser.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParser.cpp In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./include/muParser.h:32, from ./src/muParser.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ g++ -c -o muParser_lib_muParserInt.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserInt.cpp In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./include/muParserInt.h:29, from ./src/muParserInt.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ g++ -c -o muParser_lib_muParserTokenReader.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserTokenReader.cpp In file included from ./include/muParserTokenReader.h:39, from ./src/muParserTokenReader.cpp:32: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserTokenReader.h:34: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ./src/muParserTokenReader.cpp:33: ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserTokenReader.cpp: In member function 'mu::ParserTokenReader* mu::ParserTokenReader::Clone(mu::ParserBase*) const': ./src/muParserTokenReader.cpp:150:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 150 | std::auto_ptr ptr(new ParserTokenReader(*this)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ g++ -c -o muParser_lib_muParserBase.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserBase.cpp In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./src/muParserBase.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserBase.cpp: In member function 'void mu::ParserBase::ApplyFunc(mu::ParserStack > >&, mu::ParserStack > >&, int) const': ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLE' not handled in switch [-Wswitch] 838 | switch(funTok.GetCode()) | ^ ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmGE' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmNEQ' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmEQ' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLT' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmGT' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmADD' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmSUB' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmMUL' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmDIV' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmPOW' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLAND' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLOR' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmASSIGN' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmBO' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmBC' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmIF' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmELSE' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmENDIF' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmARG_SEP' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVAR' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVAL' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW2' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW3' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW4' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARMUL' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmPOW2' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmSTRING' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmEND' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmUNKNOWN' not handled in switch [-Wswitch] g++ -c -o muParser_lib_muParserTest.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserTest.cpp ./src/muParserTest.cpp:1387: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 1387 | #pragma warning(push) | ./src/muParserTest.cpp:1388: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 1388 | #pragma warning(disable:4127) | ./src/muParserTest.cpp:1390: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 1390 | #pragma warning(pop) | In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./include/muParser.h:32, from ./include/muParserTest.h:32, from ./src/muParserTest.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserTest.cpp: In member function 'int mu::Test::ParserTester::EqnTest(const mu::string_type&, double, bool)': ./src/muParserTest.cpp:1261:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1261 | std::auto_ptr p1; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ rm -f lib/libmuparser.a ar rcu lib/libmuparser.a muParser_lib_muParser.o muParser_lib_muParserBase.o muParser_lib_muParserBytecode.o muParser_lib_muParserCallback.o muParser_lib_muParserDLL.o muParser_lib_muParserError.o muParser_lib_muParserInt.o muParser_lib_muParserTest.o muParser_lib_muParserTokenReader.o ranlib lib/libmuparser.a + cd ../ + make -j1 -C src/util/mathutils make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/mathutils' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o allocate.o allocate.c allocate.c: In function 'ALLOC_MATRIX': allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] 9 | register int i,j; | ^ allocate.c: In function 'IALLOC_MATRIX': allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] 100 | register int i,j; | ^ allocate.c: In function 'ZALLOC_MATRIX': allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] 191 | register int i,j; | ^ In file included from allocate.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a allocate.o ar: creating libmathutils.a a - allocate.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cabs.o cabs.c In file included from cabs.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cabs.o a - cabs.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cadd.o cadd.c In file included from cadd.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cadd.o a - cadd.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cconj.o cconj.c In file included from cconj.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cconj.o a - cconj.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cmult.o cmult.c In file included from cmult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cmult.o a - cmult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o complex_zero.o complex_zero.c In file included from complex_zero.c:2: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a complex_zero.o a - complex_zero.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o copy_vector.o copy_vector.c In file included from copy_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a copy_vector.o a - copy_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cprob.o cprob.c In file included from cprob.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cprob.o a - cprob.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o csub.o csub.c In file included from csub.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a csub.o a - csub.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o dotp.o dotp.c In file included from dotp.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a dotp.o a - dotp.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o eigensystem.o eigensystem.c In file included from eigensystem.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a eigensystem.o a - eigensystem.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o expi.o expi.c In file included from expi.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a expi.o a - expi.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o gram_schmidt.o gram_schmidt.c In file included from gram_schmidt.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a gram_schmidt.o a - gram_schmidt.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o herm_matrix_mult.o herm_matrix_mult.c In file included from herm_matrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a herm_matrix_mult.o a - herm_matrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o herm_matrix_vector_mult.o herm_matrix_vector_mult.c In file included from herm_matrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a herm_matrix_vector_mult.o a - herm_matrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o icmult.o icmult.c In file included from icmult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a icmult.o a - icmult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o init.o init.c In file included from init.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a init.o a - init.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o integration.o integration.c In file included from integration.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a integration.o a - integration.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o linsolve.o linsolve.c linsolve.c: In function 'LINSOLVE': linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] 16 | register int i,j; | ^ linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] 16 | register int i,j; | ^ In file included from linsolve.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a linsolve.o a - linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matherr.o matherr.c In file included from matherr.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matherr.o a - matherr.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_add.o matrix_add.c In file included from matrix_add.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_add.o a - matrix_add.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_elt.o matrix_elt.c In file included from matrix_elt.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_elt.o a - matrix_elt.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_mult.o matrix_mult.c In file included from matrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_mult.o a - matrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_sub.o matrix_sub.c In file included from matrix_sub.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_sub.o a - matrix_sub.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_transpose.o matrix_transpose.c In file included from matrix_transpose.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_transpose.o a - matrix_transpose.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_vector_mult.o matrix_vector_mult.c In file included from matrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_vector_mult.o a - matrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrixexp.o matrixexp.c In file included from matrixexp.c:5: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrixexp.o a - matrixexp.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimum.o minimum.c minimum.c: In function 'MIN_BRACKET': minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] 17 | double ulim,u,r,q,fu,dum; | ^~~ In file included from minimum.c:3: mathutils.h: At top level: mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a minimum.o a - minimum.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o norm.o norm.c norm.c: In function 'NORM': norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] 14 | double norm; | ^~~~ In file included from norm.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a norm.o a - norm.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o normsq.o normsq.c normsq.c: In function 'NORMSQ': normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] 13 | double norm; | ^~~~ In file included from normsq.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a normsq.o a - normsq.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o project.o project.c In file included from project.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a project.o a - project.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o random.o random.c In file included from random.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a random.o a - random.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o rcmult.o rcmult.c In file included from rcmult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a rcmult.o a - rcmult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o rect_transpose.o rect_transpose.c rect_transpose.c: In function 'RECT_TRANSPOSE': rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~~ rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~ In file included from rect_transpose.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a rect_transpose.o a - rect_transpose.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o roots.o roots.c In file included from roots.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ roots.c: In function 'ROOT_FIND': roots.c:55:13: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized] 55 | if (fabs(e) >= tol1 && fabs(fa) > fabs(fb)) { | ^~~~~~~ roots.c:32:29: note: 'e' was declared here 32 | double a=x1,b=x2,c=x2,d,e,min1,min2; | ^ ar rv libmathutils.a roots.o a - roots.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o runge-kutta.o runge-kutta.c In file included from runge-kutta.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a runge-kutta.o a - runge-kutta.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o scale_vector.o scale_vector.c In file included from scale_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a scale_vector.o a - scale_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o splines.o splines.c In file included from splines.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a splines.o a - splines.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sum_vector.o sum_vector.c In file included from sum_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sum_vector.o a - sum_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o svd.o svd.c In file included from svd.c:2: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ ar rv libmathutils.a svd.o a - svd.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_linsolve.o sym_linsolve.c In file included from sym_linsolve.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sym_linsolve.o a - sym_linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_matrix_mult.o sym_matrix_mult.c In file included from sym_matrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sym_matrix_mult.o a - sym_matrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_matrix_vector_mult.o sym_matrix_vector_mult.c In file included from sym_matrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sym_matrix_vector_mult.o a - sym_matrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sympos_linsolve.o sympos_linsolve.c In file included from sympos_linsolve.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sympos_linsolve.o a - sympos_linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o vector_add.o vector_add.c In file included from vector_add.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a vector_add.o a - vector_add.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o vector_dist.o vector_dist.c In file included from vector_dist.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a vector_dist.o a - vector_dist.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zcopy_vector.o zcopy_vector.c In file included from zcopy_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zcopy_vector.o a - zcopy_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zdotc.o zdotc.c In file included from zdotc.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zdotc.o a - zdotc.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zdotu.o zdotu.c In file included from zdotu.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zdotu.o a - zdotu.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_mult.o zmatrix_mult.c In file included from zmatrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_mult.o a - zmatrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_transpose.o zmatrix_transpose.c In file included from zmatrix_transpose.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_transpose.o a - zmatrix_transpose.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_vector_mult.o zmatrix_vector_mult.c In file included from zmatrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_vector_mult.o a - zmatrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o znorm.o znorm.c In file included from znorm.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a znorm.o a - znorm.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o znormsq.o znormsq.c In file included from znormsq.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a znormsq.o a - znormsq.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zrscale_vector.o zrscale_vector.c In file included from zrscale_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zrscale_vector.o a - zrscale_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zscale_vector.o zscale_vector.c In file included from zscale_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zscale_vector.o a - zscale_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zsum_vector.o zsum_vector.c In file included from zsum_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zsum_vector.o a - zsum_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zsym_linsolve.o zsym_linsolve.c In file included from zsym_linsolve.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zsym_linsolve.o a - zsym_linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_add.o zmatrix_add.c In file included from zmatrix_add.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_add.o a - zmatrix_add.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_sub.o zmatrix_sub.c In file included from zmatrix_sub.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_sub.o a - zmatrix_sub.o ranlib ./libmathutils.a make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/mathutils' ++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + mkdir -p cvode-2.6.0/build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B cvode-2.6.0/build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -S cvode-2.6.0 -B cvode-2.6.0/build '-DCMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' -DCMAKE_INSTALL_PREFIX=/usr -DEXAMPLES_ENABLE=OFF -DEXAMPLES_INSTALL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON -DMPI_ENABLE:BOOL=OFF -DFCMIX_ENABLE:BOOL=ON CMake Warning: Ignoring extra path from command line: "/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3" -- The C compiler identification is GNU 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- The Fortran compiler identification is GNU 13.0.0 -- Searching for a Fortran compiler... /usr/bin/gfortran -- Trying to compile and link a simple Fortran program... OK CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. -- Determining Fortran name-mangling scheme... OK -- Added NVECTOR_SERIAL module -- Added CVODE module -- Added CVODE FCMIX module -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_MODULE_LINKER_FLAGS INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build + /usr/bin/cmake --build cvode-2.6.0/build -j5 --verbose /usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 -B/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/depend /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/depend /usr/bin/gmake -f src/cvode/CMakeFiles/sundials_cvode_static.dir/build.make src/cvode/CMakeFiles/sundials_cvode_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/DependInfo.cmake --color= /usr/bin/gmake -f src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/build.make src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/CMakeFiles/sundials_cvode_static.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 2%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/build.make src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/build gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 5%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o /usr/bin/gmake -f src/cvode/CMakeFiles/sundials_cvode_static.dir/build.make src/cvode/CMakeFiles/sundials_cvode_static.dir/build cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/nvector_serial.c gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 8%] Building C object src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -MF CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o.d -o CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/fnvector_serial.c gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 10%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c [ 13%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode.c [ 16%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbbd.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c: In function 'fcvbandsetjac_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c:48:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 48 | CVodeMem cv_mem; | ^~~~~~ [ 18%] Linking C static library libsundials_fnvecserial.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_fnvecserial_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fnvecserial_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_fnvecserial.a CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o /usr/bin/ranlib libsundials_fnvecserial.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 18%] Built target sundials_fnvecserial_static [ 21%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbp.c [ 24%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_io.c [ 27%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c [ 29%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c: In function 'fcvdensesetjac_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c:48:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 48 | CVodeMem cv_mem; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c: In function 'fcvewtset_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c:46:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 46 | CVodeMem cv_mem; | ^~~~~~ [ 32%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c [ 35%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvode.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c: In function 'fcvspilssetjac_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c:52:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 52 | CVodeMem cv_mem; | ^~~~~~ [ 37%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c [ 40%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_direct.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c: In function 'fcvspilssetprec_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c:59:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 59 | CVodeMem cv_mem; | ^~~~~~ [ 43%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c: In function 'fcvrootinit_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c:44:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 44 | CVodeMem cv_mem; | ^~~~~~ [ 45%] Linking C static library libsundials_nvecserial.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_nvecserial_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_nvecserial_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_nvecserial.a CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o /usr/bin/ranlib libsundials_nvecserial.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 48%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_band.c [ 48%] Built target sundials_nvecserial_static [ 51%] Linking C static library libsundials_fcvode.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -P CMakeFiles/sundials_fcvode_static.dir/cmake_clean_target.cmake [ 54%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_dense.c cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fcvode_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_fcvode.a CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o /usr/bin/ranlib libsundials_fcvode.a [ 56%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_diag.c gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 56%] Built target sundials_fcvode_static [ 59%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spils.c [ 62%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spbcgs.c [ 64%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects 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-I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_sptfqmr.c [ 72%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o [ 72%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_bandpre.c [ 78%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto 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-I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_direct.c [ 83%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_band.c [ 86%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_dense.c [ 89%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_iterative.c [ 91%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spbcgs.c [ 94%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c [ 97%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_sptfqmr.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c: In function 'SpgmrFree': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c:439:29: warning: variable 'yg' set but not used [-Wunused-but-set-variable] 439 | realtype **Hes, *givens, *yg; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c:439:20: warning: variable 'givens' set but not used [-Wunused-but-set-variable] 439 | realtype **Hes, *givens, *yg; | ^~~~~~ [100%] Linking C static library libsundials_cvode.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -P CMakeFiles/sundials_cvode_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_cvode_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_cvode.a CMakeFiles/sundials_cvode_static.dir/cvode.c.o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o /usr/bin/ranlib libsundials_cvode.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [100%] Built target sundials_cvode_static gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/CMakeFiles 0 ++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include' + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser' + mkdir -p build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON -- The C compiler identification is GNU 13.0.0 -- The CXX compiler identification is GNU 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_SHARED_LIBS BUILD_STATIC_LIBS CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build + /usr/bin/cmake --build build -j5 --verbose /usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -B/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/network.cpp.o -MF CMakeFiles/run_network.dir/src/network.cpp.o.d -o CMakeFiles/run_network.dir/src/network.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp [ 9%] Building CXX object CMakeFiles/run_network.dir/src/network3.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/network3.cpp.o -MF CMakeFiles/run_network.dir/src/network3.cpp.o.d -o CMakeFiles/run_network.dir/src/network3.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:46: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:54: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i/*, j*/; | ^ [ 10%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpression.cpp ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void read_functions_array(const char*, Elt_array*&, std::map, double*>&, std::map, int>, std::map, int>, double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:440:13: warning: variable 'index' set but not used [-Wunused-but-set-variable] 440 | int index; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:735:84: warning: variable 'n_deriv_calls_last' set but not used [-Wunused-but-set-variable] 735 | long int /*n_steps = 0, n_steps_last = 0,*/ n_rate_calls_last = 0, n_deriv_calls_last = 0; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1132 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1543 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1925 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1927:15: warning: variable 'sarr' set but not used [-Wunused-but-set-variable] 1927 | Elt **sarr, **rarr; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int n_species_active()': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2068 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int get_conc_network(double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2088 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int set_conc_network(double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int rxn_rates_network(double*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2729 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void derivs_network(double, double*, double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2782:15: warning: unused variable 'rarray' [-Wunused-variable] 2782 | Rxn **rarray, *rxn; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2783:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 2783 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_derivs_network(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2957 | register int i/*,j*/; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_derivs_species_network(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2990 | register int i/*,j*/; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_rates_network(FILE*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3019 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void sparse_jac_matlab(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3204:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 3204 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3277:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 3277 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3338:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 3338 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_flux_network(FILE*, double, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 4037 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_rxn_update_list(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4376:29: warning: variable 'rxn' set but not used [-Wunused-but-set-variable] 4376 | Rxn /* **rarray,*/ *rxn; | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_as_reactant_list(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4410:13: warning: variable 'offset' set but not used [-Wunused-but-set-variable] 4410 | int offset; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int create_update_lists()': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4757:37: warning: unused variable 'pp' [-Wunused-variable] 4757 | int pp = GSP.func_param_affect.at(ff)-1; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int init_gillespie_direct_network(int, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4837:15: warning: unused variable 'rarray' [-Wunused-variable] 4837 | Rxn** rarray; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int init_adaptive_scaling_network(int, int, double, bool)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4905:15: warning: unused variable 'rarray' [-Wunused-variable] 4905 | Rxn** rarray; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int update_gillespie_direct_network(int, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:13: warning: unused variable 'ip' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:17: warning: unused variable 'ir' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:21: warning: unused variable 'is' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:25: warning: unused variable 'irxn' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4980:14: warning: unused variable 'rxn_dep' [-Wunused-variable] 4980 | int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:17: warning: unused variable 'arl' [-Wunused-variable] 4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:23: warning: unused variable 'apl' [-Wunused-variable] 4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:29: warning: unused variable 'rul' [-Wunused-variable] 4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:13: warning: unused variable 'offset' [-Wunused-variable] 4984 | int offset, r_index, p_index; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:21: warning: unused variable 'r_index' [-Wunused-variable] 4984 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:30: warning: unused variable 'p_index' [-Wunused-variable] 4984 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4985:15: warning: unused variable 'rarray' [-Wunused-variable] 4985 | Rxn **rarray, *rxn; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4985:24: warning: unused variable 'rxn' [-Wunused-variable] 4985 | Rxn **rarray, *rxn; | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int update_adaptive_scaling_network(int, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:13: warning: unused variable 'ip' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:17: warning: unused variable 'ir' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:21: warning: unused variable 'is' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:25: warning: unused variable 'irxn' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5162:14: warning: unused variable 'rxn_dep' [-Wunused-variable] 5162 | int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:17: warning: unused variable 'arl' [-Wunused-variable] 5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:23: warning: unused variable 'apl' [-Wunused-variable] 5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:29: warning: unused variable 'rul' [-Wunused-variable] 5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:13: warning: unused variable 'offset' [-Wunused-variable] 5166 | int offset, r_index, p_index; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:21: warning: unused variable 'r_index' [-Wunused-variable] 5166 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:30: warning: unused variable 'p_index' [-Wunused-variable] 5166 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5167:15: warning: unused variable 'rarray' [-Wunused-variable] 5167 | Rxn **rarray, *rxn; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5167:24: warning: unused variable 'rxn' [-Wunused-variable] 5167 | Rxn **rarray, *rxn; | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void update_rxn_rates(int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5683:27: warning: variable 'c' set but not used [-Wunused-but-set-variable] 5683 | double *a, anew, *c; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void update_rxn_rates_has(int, double, bool)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5747:27: warning: variable 'c' set but not used [-Wunused-but-set-variable] 5747 | double *a, anew, *c; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h: At global scope: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:262:23: warning: 'mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){ | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:258:23: warning: 'mu::value_type If(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){ | ^~ In file included from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:39: ../src/util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ ../src/util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ ../src/util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ ../src/util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ ../src/util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ [ 12%] Building CXX object CMakeFiles/run_network.dir/src/model/reaction.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reaction.cpp.o -MF CMakeFiles/run_network.dir/src/model/reaction.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reaction.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reaction.cpp /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: At global scope: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3332:12: warning: 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)' defined but not used [-Wunused-function] 3332 | static int CVjtimes(N_Vector v, N_Vector Jv, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp) { | ^~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3270:13: warning: 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)' defined but not used [-Wunused-function] 3270 | static void CVjac_network(long int N, DlsMat J, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp1, N_Vector tmp2, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:38: ../src/util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ ../src/util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ ../src/util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:262:23: warning: 'mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){ | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:258:23: warning: 'mu::value_type If(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){ | ^~ [ 14%] Building CXX object CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o -MF CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o.d -o CMakeFiles/run_network.dir/src/model/simpleSpecies.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/simpleSpecies.cpp /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp: In function 'main': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:588:20: warning: 'sample_time' may be used uninitialized [-Wmaybe-uninitialized] 588 | else t_end = t_start + (double)n_sample*sample_time; | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:106:12: note: 'sample_time' was declared here 106 | double sample_time, *sample_times = 0x0/*, *st, t1*/; | ^~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1014:47: warning: 'derivs' may be used uninitialized [-Wmaybe-uninitialized] 1014 | derivs_network(t, conc, derivs); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:32: note: 'derivs' was declared here 117 | double *conc, *conc_last, *derivs; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1009:49: warning: 'conc' may be used uninitialized [-Wmaybe-uninitialized] 1009 | get_conc_network(conc); | ~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:13: note: 'conc' was declared here 117 | double *conc, *conc_last, *derivs; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1010:45: warning: 'conc_last' may be used uninitialized [-Wmaybe-uninitialized] 1010 | delta = sqrt(VECTOR_DIST(conc, conc_last, n_species_network())) / n_species_network(); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:20: note: 'conc_last' was declared here 117 | double *conc, *conc_last, *derivs; | ^~~~~~~~~ [ 16%] Building CXX object CMakeFiles/run_network.dir/src/pla/PLA.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/PLA.cpp.o -MF CMakeFiles/run_network.dir/src/pla/PLA.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/PLA.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/PLA.cpp /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'rxn_rate_scaled(RXN*, double*, int, double&, double, bool) [clone .constprop.0]': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2703:22: warning: 'rate' may be used uninitialized [-Wmaybe-uninitialized] 2703 | if (discrete && rate < 0.0){ | ~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2328:16: note: 'rate' was declared here 2328 | double rate; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'rxn_rate(RXN*, double*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2303:22: warning: 'rate' may be used uninitialized [-Wmaybe-uninitialized] 2303 | if (discrete && rate < 0.0){ | ~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2126:16: note: 'rate' was declared here 2126 | double rate; | ^~~~ [ 18%] Building CXX object CMakeFiles/run_network.dir/src/util/conversion.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/util/conversion.cpp.o -MF CMakeFiles/run_network.dir/src/util/conversion.cpp.o.d -o CMakeFiles/run_network.dir/src/util/conversion.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/conversion.cpp [ 20%] Building CXX object CMakeFiles/run_network.dir/src/util/misc.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base 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-I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode 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-I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.cpp [ 30%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateSaturation.cpp [ 32%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.cpp In file included from ../muparser_v2_2_4/include/../include/muParserStack.h:35, from ../muparser_v2_2_4/include/../include/muParserBase.h:39, from ../muparser_v2_2_4/include/../include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.cpp:8: ../muparser_v2_2_4/include/../include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/../include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/../include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 34%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/elementaryRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 36%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/functionalRxn.cpp [ 38%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/hillRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/elementaryRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 40%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/michaelisMentenRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/functionalRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 41%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/saturationRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/hillRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 43%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/firingGenerator.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/michaelisMentenRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/postleapChecker.cpp [ 47%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/rxnClassifier.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/saturationRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 49%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/tauCalculator.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util 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CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o.d -o CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2/rand2.cpp [100%] Linking CXX executable run_network /usr/bin/cmake -E cmake_link_script CMakeFiles/run_network.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix 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CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o CMakeFiles/run_network.dir/src/pla/util/preleap_TC.cpp.o CMakeFiles/run_network.dir/src/pla/util/rbChecker.cpp.o CMakeFiles/run_network.dir/src/pla/util/sbChecker.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/aEff_Calculator.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/binomialCorrector_RK.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/butcherTableau.cpp.o CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o -o run_network -L/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/lib -Wl,-Bstatic -lmathutils -lmuparser -lsundials_cvode -lsundials_fcvode -lsundials_nvecserial -Wl,-Bdynamic gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' [100%] Built target run_network gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles 0 + popd ~/build/BUILD/bionetgen-2.8.4 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bywPLc + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le ++ dirname /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.8.4 ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build ~/build/BUILD/bionetgen-2.8.4 mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/bin' + pushd bionetgen-BioNetGen-2.8.4/bng2/Network3/build + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/bin + install -pm 755 run_network /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/bin/ ~/build/BUILD/bionetgen-2.8.4 + popd + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bionetgen-BioNetGen-2.8.4/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/ + cp -r bionetgen-BioNetGen-2.8.4/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/ + cp -a bionetgen-BioNetGen-2.8.4/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/ + rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_ppc64le-linux + rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network + /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 2.8.4-3.fc38 --unique-debug-suffix -2.8.4-3.fc38.ppc64le --unique-debug-src-base bionetgen-2.8.4-3.fc38.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.8.4 extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/bin/run_network original debug info size: 9088kB, size after compression: 6976kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 2296 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Ehj8HU + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.8.4 + pushd bionetgen-BioNetGen-2.8.4/bng2/Models2 ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Models2 ~/build/BUILD/bionetgen-2.8.4 + install -pm 755 ../Network3/build/run_network -D ./bin/run_network_ppc64le-linux + install -pm 755 ../Network3/build/run_network -D ../bin/run_network_ppc64le-linux + echo 'Running some tests ...' Running some tests ... + ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl BioNetGen version 2.8.4 Reading from file CaOscillate_Func.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Func ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Total : 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Wrote network in net format to ./CaOscillate_Func.net. CPU TIME: generate_network 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net. Wrote network in net format to ./CaOscillate_Func.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200 [simulation PID is: 3072] run_network 3.0 Read 17 parameters from ./CaOscillate_Func.net Read 4 species from ./CaOscillate_Func.net Read 4 group(s) from ./CaOscillate_Func.net Read 4 function(s) from ./CaOscillate_Func.net Read 8 reaction(s) from ./CaOscillate_Func.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 719 851 0.20 753 889 0.30 788 924 0.40 822 962 0.50 857 997 0.60 891 1035 0.70 926 1070 0.80 960 1108 0.90 995 1147 1.00 1029 1181 1.10 1064 1221 1.20 1098 1257 1.30 1133 1299 1.40 1167 1335 1.50 1215 1393 1.60 1263 1449 1.70 1324 1520 1.80 1389 1596 1.90 1460 1680 2.00 1544 1781 2.10 1620 1865 2.20 1697 1946 2.30 1749 2005 2.40 1800 2063 2.50 1854 2128 2.60 1993 2299 2.70 2464 2852 2.80 2562 2973 2.90 2607 3025 3.00 2657 3086 3.10 2718 3156 3.20 2779 3224 3.30 2839 3290 3.40 2900 3355 3.50 2961 3420 3.60 3018 3482 3.70 3071 3550 3.80 3200 3708 3.90 3345 3881 4.00 3456 4003 4.10 3521 4073 4.20 3572 4129 4.30 3624 4186 4.40 3671 4234 4.50 3707 4279 4.60 3753 4333 4.70 3799 4383 4.80 3856 4451 4.90 3913 4526 5.00 3969 4585 5.10 4010 4632 5.20 4047 4675 5.30 4080 4709 5.40 4105 4739 5.50 4129 4764 5.60 4154 4797 5.70 4178 4823 5.80 4201 4848 5.90 4221 4871 6.00 4241 4897 6.10 4261 4918 6.20 4281 4943 6.30 4294 4956 6.40 4307 4970 6.50 4321 4984 6.60 4334 4997 6.70 4347 5014 6.80 4356 5024 6.90 4365 5033 7.00 4374 5042 7.10 4383 5052 7.20 4392 5062 7.30 4401 5071 7.40 4410 5086 7.50 4419 5095 7.60 4427 5103 7.70 4436 5113 7.80 4445 5123 7.90 4457 5142 8.00 4469 5165 8.10 4481 5179 8.20 4491 5192 8.30 4504 5211 8.40 4522 5240 8.50 4543 5268 8.60 4568 5298 8.70 4607 5350 8.80 4663 5420 8.90 4772 5555 9.00 5104 5945 9.10 5399 6270 9.20 5507 6389 9.30 5546 6435 9.40 5561 6451 9.50 5573 6463 9.60 5585 6475 9.70 5597 6492 9.80 5608 6503 9.90 5620 6516 10.00 5632 6528 10.10 5644 6541 10.20 5656 6558 10.30 5668 6570 10.40 5680 6584 10.50 5692 6596 10.60 5703 6609 10.70 5715 6626 10.80 5727 6639 10.90 5739 6653 11.00 5751 6665 11.10 5767 6683 11.20 5783 6704 11.30 5799 6721 11.40 5815 6738 11.50 5831 6754 11.60 5847 6776 11.70 5863 6794 11.80 5879 6812 11.90 5895 6834 12.00 5911 6850 12.10 5927 6868 12.20 5943 6886 12.30 5959 6908 12.40 5975 6926 12.50 5991 6942 12.60 6012 6967 12.70 6034 6994 12.80 6056 7020 12.90 6078 7048 13.00 6100 7072 13.10 6128 7108 13.20 6158 7140 13.30 6188 7177 13.40 6223 7216 13.50 6263 7264 13.60 6311 7322 13.70 6366 7387 13.80 6435 7464 13.90 6507 7550 14.00 6594 7646 14.10 6673 7738 14.20 6750 7820 14.30 6803 7880 14.40 6856 7939 14.50 6911 8005 14.60 7038 8162 14.70 7513 8728 14.80 7634 8876 14.90 7681 8925 15.00 7731 8985 15.10 7793 9054 15.20 7848 9121 15.30 7904 9185 15.40 7960 9246 15.50 8016 9306 15.60 8072 9366 15.70 8129 9434 15.80 8253 9587 15.90 8393 9752 16.00 8510 9880 16.10 8578 9953 16.20 8634 10013 16.30 8690 10073 16.40 8738 10126 16.50 8776 10172 16.60 8820 10221 16.70 8870 10277 16.80 8928 10346 16.90 8988 10415 17.00 9046 10480 17.10 9088 10524 17.20 9126 10568 17.30 9160 10607 17.40 9185 10632 17.50 9211 10659 17.60 9236 10692 17.70 9261 10718 17.80 9284 10747 17.90 9304 10769 18.00 9325 10791 18.10 9346 10817 18.20 9365 10837 18.30 9376 10850 18.40 9385 10859 18.50 9394 10874 18.60 9404 10884 18.70 9413 10894 18.80 9422 10903 18.90 9431 10912 19.00 9440 10921 19.10 9449 10930 19.20 9459 10945 19.30 9468 10954 19.40 9477 10964 19.50 9486 10973 19.60 9495 10984 19.70 9505 10994 19.80 9514 11012 19.90 9523 11021 20.00 9532 11031 Time course of concentrations written to file ./CaOscillate_Func.cdat. Time course of groups written to file ./CaOscillate_Func.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Func.cdat CPU TIME: simulate 0.01 s. Finished processing file CaOscillate_Func.bngl. CPU TIME: total 0.04 s. BioNetGen version 2.8.4 Reading from file CaOscillate_Sat.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Sat ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Sat.net. CPU TIME: generate_network 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net. Wrote network in net format to ./CaOscillate_Sat.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200 [simulation PID is: 3074] run_network 3.0 Read 17 parameters from ./CaOscillate_Sat.net Read 4 species from ./CaOscillate_Sat.net Read 4 group(s) from ./CaOscillate_Sat.net Read 0 function(s) from ./CaOscillate_Sat.net Read 8 reaction(s) from ./CaOscillate_Sat.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 717 850 0.20 741 879 0.30 765 904 0.40 790 930 0.50 814 960 0.60 838 985 0.70 863 1015 0.80 887 1040 0.90 911 1066 1.00 936 1099 1.10 961 1129 1.20 993 1171 1.30 1025 1207 1.40 1064 1257 1.50 1108 1309 1.60 1155 1366 1.70 1210 1431 1.80 1284 1514 1.90 1358 1601 2.00 1442 1703 2.10 1521 1789 2.20 1596 1869 2.30 1649 1928 2.40 1701 1987 2.50 1757 2053 2.60 1896 2222 2.70 2360 2768 2.80 2463 2900 2.90 2511 2957 3.00 2560 3015 3.10 2618 3082 3.20 2677 3148 3.30 2735 3213 3.40 2793 3275 3.50 2852 3338 3.60 2910 3400 3.70 2969 3470 3.80 3099 3626 3.90 3243 3798 4.00 3343 3906 4.10 3413 3985 4.20 3479 4055 4.30 3546 4126 4.40 3590 4175 4.50 3634 4222 4.60 3679 4275 4.70 3723 4327 4.80 3778 4394 4.90 3835 4465 5.00 3890 4527 5.10 3930 4571 5.20 3966 4613 5.30 3999 4651 5.40 4023 4676 5.50 4047 4702 5.60 4071 4732 5.70 4095 4759 5.80 4117 4787 5.90 4138 4811 6.00 4158 4833 6.10 4178 4854 6.20 4198 4879 6.30 4211 4892 6.40 4225 4907 6.50 4238 4924 6.60 4252 4938 6.70 4265 4951 6.80 4274 4961 6.90 4283 4970 7.00 4292 4979 7.10 4301 4989 7.20 4310 5003 7.30 4319 5012 7.40 4328 5022 7.50 4337 5031 7.60 4345 5040 7.70 4354 5050 7.80 4363 5064 7.90 4372 5079 8.00 4381 5088 8.10 4390 5099 8.20 4400 5115 8.30 4412 5134 8.40 4431 5179 8.50 4456 5205 8.60 4483 5240 8.70 4519 5286 8.80 4575 5356 8.90 4682 5482 9.00 5014 5875 9.10 5309 6200 9.20 5417 6315 9.30 5456 6361 9.40 5471 6377 9.50 5482 6388 9.60 5493 6404 9.70 5505 6417 9.80 5516 6428 9.90 5527 6440 10.00 5539 6452 10.10 5550 6468 10.20 5561 6479 10.30 5573 6493 10.40 5584 6504 10.50 5595 6517 10.60 5607 6535 10.70 5618 6546 10.80 5630 6560 10.90 5643 6575 11.00 5658 6595 11.10 5673 6610 11.20 5689 6627 11.30 5704 6644 11.40 5719 6665 11.50 5735 6681 11.60 5750 6698 11.70 5765 6715 11.80 5781 6737 11.90 5796 6753 12.00 5811 6769 12.10 5827 6787 12.20 5842 6808 12.30 5857 6825 12.40 5873 6841 12.50 5892 6863 12.60 5913 6889 12.70 5934 6912 12.80 5955 6935 12.90 5975 6961 13.00 6001 6992 13.10 6029 7028 13.20 6057 7058 13.30 6095 7112 13.40 6133 7157 13.50 6171 7203 13.60 6220 7263 13.70 6275 7328 13.80 6345 7407 13.90 6415 7492 14.00 6497 7592 14.10 6572 7678 14.20 6647 7757 14.30 6703 7819 14.40 6753 7876 14.50 6805 7938 14.60 6932 8095 14.70 7381 8618 14.80 7498 8747 14.90 7552 8807 15.00 7599 8867 15.10 7663 8938 15.20 7718 9002 15.30 7774 9065 15.40 7831 9127 15.50 7887 9187 15.60 7944 9244 15.70 8001 9317 15.80 8126 9469 15.90 8281 9649 16.00 8392 9771 16.10 8457 9841 16.20 8507 9898 16.30 8557 9954 16.40 8604 10006 16.50 8640 10047 16.60 8685 10100 16.70 8730 10154 16.80 8785 10215 16.90 8841 10289 17.00 8895 10347 17.10 8935 10395 17.20 8971 10437 17.30 9004 10471 17.40 9028 10499 17.50 9051 10525 17.60 9075 10551 17.70 9098 10580 17.80 9120 10605 17.90 9140 10629 18.00 9160 10655 18.10 9181 10677 18.20 9200 10701 18.30 9210 10716 18.40 9221 10728 18.50 9232 10740 18.60 9243 10751 18.70 9254 10762 18.80 9265 10773 18.90 9276 10788 19.00 9287 10799 19.10 9298 10810 19.20 9309 10821 19.30 9320 10832 19.40 9331 10847 19.50 9342 10858 19.60 9353 10869 19.70 9364 10880 19.80 9375 10891 19.90 9386 10903 20.00 9397 10919 Time course of concentrations written to file ./CaOscillate_Sat.cdat. Time course of groups written to file ./CaOscillate_Sat.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Sat.cdat CPU TIME: simulate 0.03 s. Finished processing file CaOscillate_Sat.bngl. CPU TIME: total 0.05 s. BioNetGen version 2.8.4 Reading from file catalysis.bngl (level 0) CPU TIME: version 0.00 s. Warning: Parameter Gf_S_kinase is set to a negative value: -41.5 Warning: Parameter Gf_S_pptase is set to a negative value: -41.5 Warning: Parameter Ea0_S_kinase is set to a negative value: -7.7 Warning: Parameter Ea0_S_pptase is set to a negative value: -7.7 Warning: Parameter Ea0_cat_kinase is set to a negative value: -11.9 Read 17 parameters. Read 1 compartments. Read 5 molecule types. Read 5 species. Read 4 reaction rule(s). Read 4 energy patterns(s). Read 6 observable(s). ACTION: generate_network( catalysis ) Iteration 0: 5 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 2 rxns 0.00e+00 CPU s Iteration 2: 9 species 6 rxns 1.00e-02 CPU s Iteration 3: 10 species 10 rxns 1.00e-02 CPU s Iteration 4: 10 species 12 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 2: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 12 reactions 2.00e-02 CPU s 1.67e-03 CPU s/rxn Wrote network in net format to ./catalysis.net. CPU TIME: generate_network 0.03 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./catalysis.net. Wrote network in net format to ./catalysis.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120 [simulation PID is: 3076] run_network 3.0 Read 30 parameters from ./catalysis.net @C::$ATP() is a fixed (boundaryCondition) variable @C::$ADP() is a fixed (boundaryCondition) variable Read 10 species from ./catalysis.net Read 6 group(s) from ./catalysis.net Read 0 function(s) from ./catalysis.net Read 12 reaction(s) from ./catalysis.net 12 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./catalysis.cdat. Time course of groups written to file ./catalysis.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./catalysis.cdat CPU TIME: simulate 0.02 s. Finished processing file catalysis.bngl. CPU TIME: total 0.07 s. BioNetGen version 2.8.4 Reading from file egfr_net.bngl (level 0) Read 48 parameters. Read 5 molecule types. Read 6 species. Read 23 reaction rule(s). Read 15 observable(s). ACTION: generate_network( egfr_net ) Iteration 0: 6 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 1.00e-02 CPU s Iteration 2: 8 species 5 rxns 1.00e-02 CPU s Iteration 3: 10 species 8 rxns 1.00e-02 CPU s Iteration 4: 19 species 21 rxns 3.00e-02 CPU s Iteration 5: 37 species 76 rxns 1.40e-01 CPU s Iteration 6: 69 species 213 rxns 2.80e-01 CPU s Iteration 7: 131 species 494 rxns 6.60e-01 CPU s Iteration 8: 295 species 1260 rxns 2.06e+00 CPU s Iteration 9: 356 species 3088 rxns 5.46e+00 CPU s Iteration 10: 356 species 3749 rxns 2.58e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 1.40e-01 CPU s 2.92e-03 CPU s/rxn Rule 2: 600 reactions 2.72e+00 CPU s 4.53e-03 CPU s/rxn Rule 3: 144 reactions 3.10e-01 CPU s 2.15e-03 CPU s/rxn Rule 4: 96 reactions 2.20e-01 CPU s 2.29e-03 CPU s/rxn Rule 5: 156 reactions 2.70e-01 CPU s 1.73e-03 CPU s/rxn Rule 6: 104 reactions 1.90e-01 CPU s 1.83e-03 CPU s/rxn Rule 7: 96 reactions 2.40e-01 CPU s 2.50e-03 CPU s/rxn Rule 8: 104 reactions 2.00e-01 CPU s 1.92e-03 CPU s/rxn Rule 9: 312 reactions 7.90e-01 CPU s 2.53e-03 CPU s/rxn Rule 10: 312 reactions 8.40e-01 CPU s 2.69e-03 CPU s/rxn Rule 11: 312 reactions 8.90e-01 CPU s 2.85e-03 CPU s/rxn Rule 12: 208 reactions 5.10e-01 CPU s 2.45e-03 CPU s/rxn Rule 13: 208 reactions 5.00e-01 CPU s 2.40e-03 CPU s/rxn Rule 14: 208 reactions 6.40e-01 CPU s 3.08e-03 CPU s/rxn Rule 15: 208 reactions 7.20e-01 CPU s 3.46e-03 CPU s/rxn Rule 16: 208 reactions 6.00e-01 CPU s 2.88e-03 CPU s/rxn Rule 17: 208 reactions 6.60e-01 CPU s 3.17e-03 CPU s/rxn Rule 18: 208 reactions 6.10e-01 CPU s 2.93e-03 CPU s/rxn Rule 19: 2 reactions 5.00e-02 CPU s 2.50e-02 CPU s/rxn Rule 20: 2 reactions 5.00e-02 CPU s 2.50e-02 CPU s/rxn Rule 21: 1 reactions 2.00e-02 CPU s 2.00e-02 CPU s/rxn Rule 22: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 23: 2 reactions 4.00e-02 CPU s 2.00e-02 CPU s/rxn Total : 3749 reactions 1.12e+01 CPU s 3.00e-03 CPU s/rxn Wrote network in net format to ./egfr_net.net. CPU TIME: generate_network 11.40 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net.net. Wrote network in net format to ./egfr_net.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50 [simulation PID is: 3078] run_network 3.0 Read 48 parameters from ./egfr_net.net Read 356 species from ./egfr_net.net Read 15 group(s) from ./egfr_net.net Read 0 function(s) from ./egfr_net.net Read 3749 reaction(s) from ./egfr_net.net 3749 reaction(s) have nonzero rate Initialization took 0.02 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net.cdat. Time course of groups written to file ./egfr_net.gdat. Propagation took 1.00e-01 CPU seconds Program times: 0.12 CPU s 0.00 clock s Updating species concentrations from ./egfr_net.cdat CPU TIME: simulate 0.29 s. Finished processing file egfr_net.bngl. CPU TIME: total 11.78 s. BioNetGen version 2.8.4 Reading from file egfr_net_red.bngl (level 0) Read 48 parameters. Read 7 molecule types. Read 7 species. Read 14 observable(s). Read 26 reaction rule(s). ACTION: generate_network( egfr_net_red ) Iteration 0: 7 species 0 rxns 0.00e+00 CPU s Iteration 1: 11 species 4 rxns 1.00e-02 CPU s Iteration 2: 13 species 10 rxns 1.00e-02 CPU s Iteration 3: 15 species 14 rxns 1.00e-02 CPU s Iteration 4: 20 species 21 rxns 2.00e-02 CPU s Iteration 5: 26 species 39 rxns 3.00e-02 CPU s Iteration 6: 33 species 62 rxns 4.00e-02 CPU s Iteration 7: 38 species 90 rxns 5.00e-02 CPU s Iteration 8: 40 species 115 rxns 4.00e-02 CPU s Iteration 9: 40 species 123 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 3: 12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn Rule 4: 8 reactions 4.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 5: 12 reactions 1.00e-02 CPU s 8.33e-04 CPU s/rxn Rule 6: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 1 reactions 2.00e-02 CPU s 2.00e-02 CPU s/rxn Rule 11: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 12: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 13: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 15: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 16: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 17: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 18: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 20: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 21: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 22: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 23: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 24: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 25: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 26: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 123 reactions 2.20e-01 CPU s 1.79e-03 CPU s/rxn Wrote network in net format to ./egfr_net_red.net. CPU TIME: generate_network 0.23 s. Set concentration of species egf(r) to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10 [simulation PID is: 3080] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.02 s. Set concentration of species egf(r) to value egf_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120 [simulation PID is: 3082] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.03 s. Finished processing file egfr_net_red.bngl. CPU TIME: total 0.36 s. BioNetGen version 2.8.4 Reading from file egfr_path.bngl (level 0) Read 48 parameters. Read 18 species. Read 19 reaction rule(s). Read 11 observable(s). ACTION: generate_network( egfr_path ) Iteration 0: 18 species 0 rxns 0.00e+00 CPU s Iteration 1: 18 species 37 rxns 3.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 11: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 15: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 16: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 18: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 37 reactions 3.00e-02 CPU s 8.11e-04 CPU s/rxn Wrote network in net format to ./egfr_path.net. CPU TIME: generate_network 0.05 s. Set concentration of species EGF() to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10 [simulation PID is: 3084] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.00 s. Set concentration of species EGF() to value EGF_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120 [simulation PID is: 3086] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.03 s. Finished processing file egfr_path.bngl. CPU TIME: total 0.13 s. BioNetGen version 2.8.4 Reading from file energy_example1.bngl (level 0) CPU TIME: version 0.00 s. Warning: Parameter Gf_SA is set to a negative value: -47.5 Warning: Parameter Gf_SB is set to a negative value: -47.5 Warning: Parameter Gf_SC is set to a negative value: -47.5 Warning: Parameter Gf_SBC is set to a negative value: -5.9 Warning: Parameter Gf_SABC is set to a negative value: -1.8 Warning: Parameter Ea0_SA is set to a negative value: -17.8 Warning: Parameter Ea0_SB is set to a negative value: -17.8 Warning: Parameter Ea0_SC is set to a negative value: -17.8 Read 19 parameters. Read 1 compartments. Read 4 molecule types. Read 4 species. Read 6 energy patterns(s). Read 11 observable(s). Read 3 reaction rule(s). ACTION: generate_network( energy_example1 ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 1.00e-02 CPU s Iteration 2: 10 species 12 rxns 3.00e-02 CPU s Iteration 3: 11 species 21 rxns 3.00e-02 CPU s Iteration 4: 11 species 24 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 2: 8 reactions 4.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 3: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Total : 24 reactions 8.00e-02 CPU s 3.33e-03 CPU s/rxn Wrote network in net format to ./energy_example1.net. CPU TIME: generate_network 0.09 s. Wrote SBML to ./energy_example1_sbml.xml. CPU TIME: writeSBML 0.01 s. Finished processing file energy_example1.bngl. CPU TIME: total 0.13 s. BioNetGen version 2.8.4 Reading from file fceri_ji.bngl (level 0) Read 26 parameters. Read 4 species. Adding pY as allowed state of component b of molecule Rec Adding pY as allowed state of component g of molecule Rec Adding pY as allowed state of component l of molecule Syk Adding pY as allowed state of component a of molecule Syk Read 19 reaction rule(s). Read 10 observable(s). ACTION: generate_network( fceri_ji ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 0.00e+00 CPU s Iteration 2: 9 species 8 rxns 1.00e-02 CPU s Iteration 3: 12 species 20 rxns 3.00e-02 CPU s Iteration 4: 22 species 36 rxns 4.00e-02 CPU s Iteration 5: 43 species 100 rxns 1.00e-01 CPU s Iteration 6: 78 species 255 rxns 2.50e-01 CPU s Iteration 7: 139 species 586 rxns 5.70e-01 CPU s Iteration 8: 199 species 1190 rxns 1.16e+00 CPU s Iteration 9: 303 species 1841 rxns 1.42e+00 CPU s Iteration 10: 354 species 3143 rxns 2.42e+00 CPU s Iteration 11: 354 species 3680 rxns 1.08e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 1.40e-01 CPU s 2.92e-03 CPU s/rxn Rule 2: 1152 reactions 1.99e+00 CPU s 1.73e-03 CPU s/rxn Rule 3: 312 reactions 6.00e-01 CPU s 1.92e-03 CPU s/rxn Rule 4: 36 reactions 1.20e-01 CPU s 3.33e-03 CPU s/rxn Rule 5: 24 reactions 1.20e-01 CPU s 5.00e-03 CPU s/rxn Rule 6: 312 reactions 5.70e-01 CPU s 1.83e-03 CPU s/rxn Rule 7: 36 reactions 1.20e-01 CPU s 3.33e-03 CPU s/rxn Rule 8: 24 reactions 1.00e-01 CPU s 4.17e-03 CPU s/rxn Rule 9: 832 reactions 1.45e+00 CPU s 1.74e-03 CPU s/rxn Rule 10: 48 reactions 1.60e-01 CPU s 3.33e-03 CPU s/rxn Rule 11: 48 reactions 1.60e-01 CPU s 3.33e-03 CPU s/rxn Rule 12: 64 reactions 2.70e-01 CPU s 4.22e-03 CPU s/rxn Rule 13: 64 reactions 2.00e-01 CPU s 3.12e-03 CPU s/rxn Rule 14: 156 reactions 2.20e-01 CPU s 1.41e-03 CPU s/rxn Rule 15: 104 reactions 1.50e-01 CPU s 1.44e-03 CPU s/rxn Rule 16: 208 reactions 3.40e-01 CPU s 1.63e-03 CPU s/rxn Rule 17: 208 reactions 3.20e-01 CPU s 1.54e-03 CPU s/rxn Rule 18: 2 reactions 4.00e-02 CPU s 2.00e-02 CPU s/rxn Rule 19: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 3680 reactions 7.08e+00 CPU s 1.92e-03 CPU s/rxn Wrote network in net format to ./fceri_ji.net. CPU TIME: generate_network 7.24 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./fceri_ji.net. Wrote network in net format to ./fceri_ji.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10 [simulation PID is: 3088] run_network 3.0 Read 26 parameters from ./fceri_ji.net Read 354 species from ./fceri_ji.net Read 10 group(s) from ./fceri_ji.net Read 0 function(s) from ./fceri_ji.net Read 3680 reaction(s) from ./fceri_ji.net Removed 600 reactions with zero rate 3080 reaction(s) have nonzero rate Initialization took 0.02 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./fceri_ji.cdat. Time course of groups written to file ./fceri_ji.gdat. Propagation took 7.40e-01 CPU seconds Program times: 0.76 CPU s 1.00 clock s Updating species concentrations from ./fceri_ji.cdat CPU TIME: simulate 0.91 s. Finished processing file fceri_ji.bngl. CPU TIME: total 8.20 s. BioNetGen version 2.8.4 Reading from file test_continue.bngl (level 0) Read 19 parameters. Read 5 molecule types. Read 4 species. Read 6 observable(s). Read 6 reaction rule(s). ACTION: generate_network( test_continue ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 1.00e-02 CPU s Iteration 2: 7 species 5 rxns 0.00e+00 CPU s Iteration 3: 8 species 7 rxns 1.00e-02 CPU s Iteration 4: 12 species 12 rxns 2.00e-02 CPU s Iteration 5: 17 species 30 rxns 4.00e-02 CPU s Iteration 6: 22 species 59 rxns 5.00e-02 CPU s Iteration 7: 22 species 76 rxns 4.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 20 reactions 8.00e-02 CPU s 4.00e-03 CPU s/rxn Rule 3: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 24 reactions 4.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 6: 14 reactions 5.00e-02 CPU s 3.57e-03 CPU s/rxn Total : 76 reactions 1.70e-01 CPU s 2.24e-03 CPU s/rxn Wrote network in net format to ./test_continue.net. CPU TIME: generate_network 0.17 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 3090] run_network 3.0 Read 19 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.02 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 3092] run_network 3.0 Read 20 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.01 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 3094] run_network 3.0 Read 21 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.00 s. Reset species concentrations to "DEFAULT" saved values. CPU TIME: resetConcentrations 0.00 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.01 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./test_continue_ssa -p ssa -h 1456496461 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 3096] run_network 3.0 Read 21 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 71321 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 3.00e-02 CPU seconds Program times: 0.03 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.05 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./test_continue_ssa -p ssa -h 497003382 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 3098] run_network 3.0 Read 22 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 130413 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 5.00e-02 CPU seconds Program times: 0.05 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.07 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.01 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_ppc64le-linux -o ./test_continue_ssa -p ssa -h 2102364668 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 3100] run_network 3.0 Read 23 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 107030 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 5.00e-02 CPU seconds Program times: 0.05 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.06 s. Finished processing file test_continue.bngl. CPU TIME: total 0.43 s. Tests finished. + echo 'Tests finished.' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bionetgen-2.8.4-3.fc38.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RxX6FD + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.8.4 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/README.md /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/doc/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.gVLrrU + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.8.4 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/licenses/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/LICENSE /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le/usr/share/licenses/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Provides: bionetgen = 2.8.4-3.fc38 bionetgen(ppc-64) = 2.8.4-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.8.4-3.fc38.noarch Provides: bionetgen-perl = 2.8.4-3.fc38 bundled(XML-TreePP) = 0.41 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.8.4-3.fc38.ppc64le Provides: bionetgen-debugsource = 2.8.4-3.fc38 bionetgen-debugsource(ppc-64) = 2.8.4-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.8.4-3.fc38.ppc64le Provides: bionetgen-debuginfo = 2.8.4-3.fc38 bionetgen-debuginfo(ppc-64) = 2.8.4-3.fc38 debuginfo(build-id) = 2102bee5d84b07ff6029d783c77d52232dcc52ff Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(ppc-64) = 2.8.4-3.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le Wrote: /builddir/build/RPMS/bionetgen-2.8.4-3.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.8.4-3.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.8.4-3.fc38.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.8.4-3.fc38.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zzgO5z + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.8.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.R2mOaS + umask 022 + cd /builddir/build/BUILD + rm -rf bionetgen-2.8.4 bionetgen-2.8.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bionetgen-2.8.4-3.fc38.src.rpm Finish: build phase for bionetgen-2.8.4-3.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1671780812.151845/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm) Config(child) 1 minutes 39 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool