Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c2a6' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5174200 --chroot fedora-rawhide-ppc64le --detached
Version: 0.62
PID: 5802
Logging PID: 5803
Task:
{'appstream': False,
 'background': True,
 'build_id': 5174200,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '8a2eaf4d26f44c0df2ba49251d3666a8b439c286',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/percolator',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'percolator',
 'package_version': '3.05-10',
 'project_dirname': 'gcc-13-test',
 'project_name': 'gcc-13-test',
 'project_owner': 'jakub',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository'},
           {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/',
            'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch',
            'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}],
 'sandbox': 'jakub/gcc-13-test--jakub',
 'source_json': {},
 'source_type': None,
 'submitter': 'jakub',
 'tags': [],
 'task_id': '5174200-fedora-rawhide-ppc64le',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/percolator /var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/percolator', '/var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator'...

Running: git checkout 8a2eaf4d26f44c0df2ba49251d3666a8b439c286

cmd: ['git', 'checkout', '8a2eaf4d26f44c0df2ba49251d3666a8b439c286']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator
rc: 0
stdout: 
stderr: Note: switching to '8a2eaf4d26f44c0df2ba49251d3666a8b439c286'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 8a2eaf4 automatic import of percolator

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator
rc: 0
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading percolator-rel-3-05.tar.gz
INFO: Calling: curl -H Pragma: -o percolator-rel-3-05.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/percolator/percolator-rel-3-05.tar.gz/md5/46a10770d808f8db4bd5bd2d30c9be4d/percolator-rel-3-05.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 11.5M  100 11.5M    0     0  23.0M      0 --:--:-- --:--:-- --:--:-- 23.0M
INFO: Reading stdout from command: md5sum percolator-rel-3-05.tar.gz
INFO: Downloading yeast-01.sqt.tar.gz
INFO: Calling: curl -H Pragma: -o yeast-01.sqt.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/percolator/yeast-01.sqt.tar.gz/md5/81e1997e1c1c193cbfcd4eb54c706af9/yeast-01.sqt.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 47.9M  100 47.9M    0     0  27.9M      0  0:00:01  0:00:01 --:--:-- 27.9M
INFO: Reading stdout from command: md5sum yeast-01.sqt.tar.gz

Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator/percolator.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672042909.556246 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator/percolator.spec)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672042909.556246/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  46 MB/s |  30 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 257 kB/s |  84 kB     00:00    
fedora                                          7.2 MB/s |  60 MB     00:08    
Dependencies resolved.
==========================================================================================================================
 Package                         Arch     Version                    Repository                                       Size
==========================================================================================================================
Installing:
 dnf                             noarch   4.14.0-1.fc38              fedora                                          480 k
 dnf-plugins-core                noarch   4.3.1-1.fc38               fedora                                           34 k
Installing dependencies:
 alternatives                    ppc64le  1.21-1.fc38                copr_base                                        41 k
 audit-libs                      ppc64le  3.0.9-2.fc38               fedora                                          130 k
 basesystem                      noarch   11-14.fc37                 fedora                                          7.0 k
 bash                            ppc64le  5.2.9-3.fc38               copr_base                                       1.9 M
 bzip2-libs                      ppc64le  1.0.8-12.fc38              copr_base                                        48 k
 ca-certificates                 noarch   2022.2.54-5.fc37           fedora                                          829 k
 coreutils                       ppc64le  9.1-8.fc38                 copr_base                                       1.3 M
 coreutils-common                ppc64le  9.1-8.fc38                 copr_base                                       2.0 M
 crypto-policies                 noarch   20221215-1.gita4c31a3.fc38 fedora                                           90 k
 curl                            ppc64le  7.87.0-1.fc38              copr_base                                       348 k
 cyrus-sasl-lib                  ppc64le  2.1.28-8.fc38              copr_base                                       882 k
 dbus-libs                       ppc64le  1:1.14.4-1.fc38            copr_base                                       177 k
 dnf-data                        noarch   4.14.0-1.fc38              fedora                                           43 k
 elfutils-default-yama-scope     noarch   0.188-3.fc38               copr_base                                        16 k
 elfutils-libelf                 ppc64le  0.188-3.fc38               copr_base                                       205 k
 elfutils-libs                   ppc64le  0.188-3.fc38               copr_base                                       291 k
 expat                           ppc64le  2.5.0-1.fc38               copr_base                                       117 k
 fedora-gpg-keys                 noarch   38-0.3                     fedora                                          125 k
 fedora-release                  noarch   38-0.6                     fedora                                           11 k
 fedora-release-common           noarch   38-0.6                     fedora                                           21 k
 fedora-release-identity-basic   noarch   38-0.6                     fedora                                           11 k
 fedora-repos                    noarch   38-0.3                     fedora                                           10 k
 fedora-repos-rawhide            noarch   38-0.3                     fedora                                          9.7 k
 file-libs                       ppc64le  5.42-4.fc38                copr_base                                       688 k
 filesystem                      ppc64le  3.18-2.fc37                fedora                                          1.1 M
 findutils                       ppc64le  1:4.9.0-2.fc38             copr_base                                       530 k
 gawk                            ppc64le  5.1.1-4.fc38               copr_base                                       1.0 M
 gdbm-libs                       ppc64le  1:1.23-2.fc38              copr_base                                        62 k
 glib2                           ppc64le  2.74.1-2.fc38              copr_base                                       2.8 M
 glibc                           ppc64le  2.36.9000-19.fc38          fedora                                          2.2 M
 glibc-common                    ppc64le  2.36.9000-19.fc38          fedora                                          322 k
 glibc-minimal-langpack          ppc64le  2.36.9000-19.fc38          fedora                                           30 k
 gmp                             ppc64le  1:6.2.1-3.fc38             copr_base                                       304 k
 gnupg2                          ppc64le  2.3.8-1.fc38               copr_base                                       2.7 M
 gnutls                          ppc64le  3.7.8-9.fc38               copr_base                                       1.1 M
 gpgme                           ppc64le  1.17.1-3.fc38              copr_base                                       229 k
 grep                            ppc64le  3.8-1.fc38                 copr_base                                       293 k
 ima-evm-utils                   ppc64le  1.4-6.fc38                 copr_base                                        67 k
 json-c                          ppc64le  0.16-3.fc38                copr_base                                        46 k
 keyutils-libs                   ppc64le  1.6.1-5.fc38               copr_base                                        33 k
 krb5-libs                       ppc64le  1.20.1-3.fc38              copr_base                                       805 k
 libacl                          ppc64le  2.3.1-4.fc38               copr_base                                        26 k
 libarchive                      ppc64le  3.6.1-3.fc38               copr_base                                       464 k
 libassuan                       ppc64le  2.5.5-5.fc38               copr_base                                        71 k
 libattr                         ppc64le  2.5.1-5.fc38               copr_base                                        19 k
 libb2                           ppc64le  0.98.1-7.fc38              copr_base                                        26 k
 libblkid                        ppc64le  2.38.1-3.fc38              fedora                                          122 k
 libbrotli                       ppc64le  1.0.9-9.fc38               copr_base                                       345 k
 libcap                          ppc64le  2.48-5.fc38                copr_base                                        73 k
 libcap-ng                       ppc64le  0.8.3-4.fc38               copr_base                                        34 k
 libcom_err                      ppc64le  1.46.5-3.fc38              copr_base                                        26 k
 libcomps                        ppc64le  0.1.18-4.fc38              copr_base                                        84 k
 libcurl                         ppc64le  7.87.0-1.fc38              copr_base                                       334 k
 libdnf                          ppc64le  0.68.0-1.fc38              copr_base                                       668 k
 libevent                        ppc64le  2.1.12-7.fc38              copr_base                                       276 k
 libffi                          ppc64le  3.4.4-1.fc38               copr_base                                        39 k
 libfsverity                     ppc64le  1.4-8.fc38                 copr_base                                        20 k
 libgcc                          ppc64le  13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch   88 k
 libgcrypt                       ppc64le  1.10.1-6.fc38              copr_base                                       596 k
 libgomp                         ppc64le  13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  314 k
 libgpg-error                    ppc64le  1.46-1.fc38                copr_base                                       233 k
 libidn2                         ppc64le  2.3.4-1.fc38               copr_base                                       157 k
 libksba                         ppc64le  1.6.3-1.fc38               copr_base                                       175 k
 libmodulemd                     ppc64le  2.14.0-4.fc38              copr_base                                       233 k
 libmount                        ppc64le  2.38.1-3.fc38              fedora                                          154 k
 libnghttp2                      ppc64le  1.51.0-1.fc38              copr_base                                        85 k
 libnsl2                         ppc64le  2.0.0-4.fc38               copr_base                                        33 k
 libpsl                          ppc64le  0.21.1-6.fc38              copr_base                                        67 k
 librepo                         ppc64le  1.15.1-1.fc38              copr_base                                       104 k
 libreport-filesystem            noarch   2.17.6-1.fc38              copr_base                                        14 k
 libselinux                      ppc64le  3.4-6.fc38                 copr_base                                       100 k
 libsemanage                     ppc64le  3.4-6.fc38                 copr_base                                       131 k
 libsepol                        ppc64le  3.4-4.fc38                 copr_base                                       355 k
 libsigsegv                      ppc64le  2.14-3.fc38                copr_base                                        28 k
 libsmartcols                    ppc64le  2.38.1-3.fc38              fedora                                           70 k
 libsolv                         ppc64le  0.7.22-3.fc38              copr_base                                       467 k
 libssh                          ppc64le  0.10.4-2.fc38              copr_base                                       236 k
 libssh-config                   noarch   0.10.4-2.fc38              copr_base                                       9.2 k
 libstdc++                       ppc64le  13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  932 k
 libtasn1                        ppc64le  4.19.0-1.fc38              copr_base                                        81 k
 libtirpc                        ppc64le  1.3.3-0.fc38               copr_base                                       108 k
 libunistring                    ppc64le  1.0-2.fc38                 copr_base                                       575 k
 libuuid                         ppc64le  2.38.1-3.fc38              fedora                                           29 k
 libverto                        ppc64le  0.3.2-4.fc38               copr_base                                        23 k
 libxcrypt                       ppc64le  4.4.33-5.fc38              copr_base                                       133 k
 libxml2                         ppc64le  2.10.3-2.fc38              copr_base                                       780 k
 libyaml                         ppc64le  0.2.5-8.fc38               copr_base                                        70 k
 libzstd                         ppc64le  1.5.2-3.fc37               fedora                                          316 k
 lua-libs                        ppc64le  5.4.4-6.fc38               copr_base                                       149 k
 lz4-libs                        ppc64le  1.9.3-5.fc38               copr_base                                        90 k
 mpdecimal                       ppc64le  2.5.1-4.fc38               copr_base                                       118 k
 mpfr                            ppc64le  4.1.1-2.fc38               copr_base                                       609 k
 ncurses-base                    noarch   6.3-5.20221126.fc38        copr_base                                        62 k
 ncurses-libs                    ppc64le  6.3-5.20221126.fc38        copr_base                                       374 k
 nettle                          ppc64le  3.8-2.fc38                 copr_base                                       443 k
 npth                            ppc64le  1.6-10.fc38                copr_base                                        25 k
 openldap                        ppc64le  2.6.3-1.fc38               copr_base                                       288 k
 openssl-libs                    ppc64le  1:3.0.5-6.fc38             copr_base                                       2.2 M
 p11-kit                         ppc64le  0.24.1-5.fc38              copr_base                                       359 k
 p11-kit-trust                   ppc64le  0.24.1-5.fc38              copr_base                                       150 k
 pcre2                           ppc64le  10.40-1.fc38.1             copr_base                                       242 k
 pcre2-syntax                    noarch   10.40-1.fc38.1             copr_base                                       143 k
 popt                            ppc64le  1.19-1.fc38                fedora                                           71 k
 publicsuffix-list-dafsa         noarch   20221208-1.fc38            fedora                                           59 k
 python-pip-wheel                noarch   22.3.1-1.fc38              fedora                                          1.4 M
 python-setuptools-wheel         noarch   65.5.1-1.fc38              fedora                                          715 k
 python3                         ppc64le  3.11.1-1.fc38              fedora                                           27 k
 python3-dateutil                noarch   1:2.8.2-4.fc37             fedora                                          361 k
 python3-dbus                    ppc64le  1.3.2-1.fc38               copr_base                                       152 k
 python3-distro                  noarch   1.8.0-1.fc38               fedora                                           49 k
 python3-dnf                     noarch   4.14.0-1.fc38              fedora                                          607 k
 python3-dnf-plugins-core        noarch   4.3.1-1.fc38               fedora                                          277 k
 python3-gpg                     ppc64le  1.17.1-3.fc38              copr_base                                       285 k
 python3-hawkey                  ppc64le  0.68.0-1.fc38              copr_base                                       109 k
 python3-libcomps                ppc64le  0.1.18-4.fc38              copr_base                                        53 k
 python3-libdnf                  ppc64le  0.68.0-1.fc38              copr_base                                       815 k
 python3-libs                    ppc64le  3.11.1-1.fc38              fedora                                          9.7 M
 python3-rpm                     ppc64le  4.18.0-8.fc38              fedora                                          101 k
 python3-six                     noarch   1.16.0-8.fc37              fedora                                           42 k
 readline                        ppc64le  8.2-2.fc38                 fedora                                          228 k
 rpm                             ppc64le  4.18.0-8.fc38              fedora                                          568 k
 rpm-build-libs                  ppc64le  4.18.0-8.fc38              fedora                                          103 k
 rpm-libs                        ppc64le  4.18.0-8.fc38              fedora                                          355 k
 rpm-sequoia                     ppc64le  1.2.0-1.fc38               fedora                                          1.4 M
 rpm-sign-libs                   ppc64le  4.18.0-8.fc38              fedora                                           27 k
 sed                             ppc64le  4.8-11.fc37                fedora                                          313 k
 setup                           noarch   2.14.3-1.fc38              fedora                                          152 k
 shadow-utils                    ppc64le  2:4.13-3.fc38              fedora                                          1.3 M
 sqlite-libs                     ppc64le  3.40.0-1.fc38              fedora                                          776 k
 systemd-libs                    ppc64le  252.4-598.fc38             fedora                                          666 k
 tpm2-tss                        ppc64le  4.0.0-0.1.rc2.fc38         fedora                                          631 k
 tzdata                          noarch   2022g-1.fc38               fedora                                          716 k
 xz-libs                         ppc64le  5.2.9-1.fc38               fedora                                          104 k
 zchunk-libs                     ppc64le  1.2.3-1.fc38               fedora                                           55 k
 zlib                            ppc64le  1.2.13-1.fc38              fedora                                          100 k

Transaction Summary
==========================================================================================================================
Install  137 Packages

Total download size: 60 M
Installed size: 284 M
Downloading Packages:
(1/137): alternatives-1.21-1.fc38.ppc64le.rpm   218 kB/s |  41 kB     00:00    
(2/137): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm   244 kB/s |  48 kB     00:00    
(3/137): bash-5.2.9-3.fc38.ppc64le.rpm          7.5 MB/s | 1.9 MB     00:00    
(4/137): coreutils-9.1-8.fc38.ppc64le.rpm        19 MB/s | 1.3 MB     00:00    
(5/137): coreutils-common-9.1-8.fc38.ppc64le.rp  27 MB/s | 2.0 MB     00:00    
(6/137): curl-7.87.0-1.fc38.ppc64le.rpm          13 MB/s | 348 kB     00:00    
(7/137): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.r  42 MB/s | 882 kB     00:00    
(8/137): dbus-libs-1.14.4-1.fc38.ppc64le.rpm     16 MB/s | 177 kB     00:00    
(9/137): elfutils-default-yama-scope-0.188-3.fc 1.4 MB/s |  16 kB     00:00    
(10/137): elfutils-libelf-0.188-3.fc38.ppc64le.  18 MB/s | 205 kB     00:00    
(11/137): elfutils-libs-0.188-3.fc38.ppc64le.rp  23 MB/s | 291 kB     00:00    
(12/137): expat-2.5.0-1.fc38.ppc64le.rpm        8.7 MB/s | 117 kB     00:00    
(13/137): file-libs-5.42-4.fc38.ppc64le.rpm      39 MB/s | 688 kB     00:00    
(14/137): findutils-4.9.0-2.fc38.ppc64le.rpm     33 MB/s | 530 kB     00:00    
(15/137): gawk-5.1.1-4.fc38.ppc64le.rpm          40 MB/s | 1.0 MB     00:00    
(16/137): gdbm-libs-1.23-2.fc38.ppc64le.rpm     3.3 MB/s |  62 kB     00:00    
(17/137): glib2-2.74.1-2.fc38.ppc64le.rpm        48 MB/s | 2.8 MB     00:00    
(18/137): gmp-6.2.1-3.fc38.ppc64le.rpm          5.6 MB/s | 304 kB     00:00    
(19/137): gnupg2-2.3.8-1.fc38.ppc64le.rpm        41 MB/s | 2.7 MB     00:00    
(20/137): gnutls-3.7.8-9.fc38.ppc64le.rpm        48 MB/s | 1.1 MB     00:00    
(21/137): gpgme-1.17.1-3.fc38.ppc64le.rpm        11 MB/s | 229 kB     00:00    
(22/137): grep-3.8-1.fc38.ppc64le.rpm            24 MB/s | 293 kB     00:00    
(23/137): ima-evm-utils-1.4-6.fc38.ppc64le.rpm  4.8 MB/s |  67 kB     00:00    
(24/137): json-c-0.16-3.fc38.ppc64le.rpm        3.4 MB/s |  46 kB     00:00    
(25/137): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 2.7 MB/s |  33 kB     00:00    
(26/137): krb5-libs-1.20.1-3.fc38.ppc64le.rpm    37 MB/s | 805 kB     00:00    
(27/137): libacl-2.3.1-4.fc38.ppc64le.rpm       1.2 MB/s |  26 kB     00:00    
(28/137): libarchive-3.6.1-3.fc38.ppc64le.rpm    23 MB/s | 464 kB     00:00    
(29/137): libassuan-2.5.5-5.fc38.ppc64le.rpm    7.0 MB/s |  71 kB     00:00    
(30/137): libattr-2.5.1-5.fc38.ppc64le.rpm      1.9 MB/s |  19 kB     00:00    
(31/137): libb2-0.98.1-7.fc38.ppc64le.rpm       2.9 MB/s |  26 kB     00:00    
(32/137): libbrotli-1.0.9-9.fc38.ppc64le.rpm     24 MB/s | 345 kB     00:00    
(33/137): libcap-2.48-5.fc38.ppc64le.rpm        4.9 MB/s |  73 kB     00:00    
(34/137): libcap-ng-0.8.3-4.fc38.ppc64le.rpm    2.3 MB/s |  34 kB     00:00    
(35/137): libcom_err-1.46.5-3.fc38.ppc64le.rpm  2.7 MB/s |  26 kB     00:00    
(36/137): libcomps-0.1.18-4.fc38.ppc64le.rpm    7.9 MB/s |  84 kB     00:00    
(37/137): libcurl-7.87.0-1.fc38.ppc64le.rpm      24 MB/s | 334 kB     00:00    
(38/137): libdnf-0.68.0-1.fc38.ppc64le.rpm       36 MB/s | 668 kB     00:00    
(39/137): libevent-2.1.12-7.fc38.ppc64le.rpm     14 MB/s | 276 kB     00:00    
(40/137): libffi-3.4.4-1.fc38.ppc64le.rpm       2.2 MB/s |  39 kB     00:00    
(41/137): libfsverity-1.4-8.fc38.ppc64le.rpm    2.3 MB/s |  20 kB     00:00    
(42/137): libgcrypt-1.10.1-6.fc38.ppc64le.rpm    34 MB/s | 596 kB     00:00    
(43/137): libgpg-error-1.46-1.fc38.ppc64le.rpm   12 MB/s | 233 kB     00:00    
(44/137): libidn2-2.3.4-1.fc38.ppc64le.rpm       12 MB/s | 157 kB     00:00    
(45/137): libksba-1.6.3-1.fc38.ppc64le.rpm       16 MB/s | 175 kB     00:00    
(46/137): libmodulemd-2.14.0-4.fc38.ppc64le.rpm  19 MB/s | 233 kB     00:00    
(47/137): libnghttp2-1.51.0-1.fc38.ppc64le.rpm  6.6 MB/s |  85 kB     00:00    
(48/137): libnsl2-2.0.0-4.fc38.ppc64le.rpm      3.7 MB/s |  33 kB     00:00    
(49/137): libpsl-0.21.1-6.fc38.ppc64le.rpm      7.2 MB/s |  67 kB     00:00    
(50/137): librepo-1.15.1-1.fc38.ppc64le.rpm      11 MB/s | 104 kB     00:00    
(51/137): libreport-filesystem-2.17.6-1.fc38.no 1.6 MB/s |  14 kB     00:00    
(52/137): libselinux-3.4-6.fc38.ppc64le.rpm     9.2 MB/s | 100 kB     00:00    
(53/137): libsemanage-3.4-6.fc38.ppc64le.rpm     12 MB/s | 131 kB     00:00    
(54/137): libsepol-3.4-4.fc38.ppc64le.rpm        27 MB/s | 355 kB     00:00    
(55/137): libsigsegv-2.14-3.fc38.ppc64le.rpm    3.2 MB/s |  28 kB     00:00    
(56/137): libsolv-0.7.22-3.fc38.ppc64le.rpm      32 MB/s | 467 kB     00:00    
(57/137): libssh-0.10.4-2.fc38.ppc64le.rpm       19 MB/s | 236 kB     00:00    
(58/137): libssh-config-0.10.4-2.fc38.noarch.rp 917 kB/s | 9.2 kB     00:00    
(59/137): libtasn1-4.19.0-1.fc38.ppc64le.rpm    8.2 MB/s |  81 kB     00:00    
(60/137): libtirpc-1.3.3-0.fc38.ppc64le.rpm      10 MB/s | 108 kB     00:00    
(61/137): libunistring-1.0-2.fc38.ppc64le.rpm    34 MB/s | 575 kB     00:00    
(62/137): libverto-0.3.2-4.fc38.ppc64le.rpm     2.0 MB/s |  23 kB     00:00    
(63/137): libxcrypt-4.4.33-5.fc38.ppc64le.rpm    13 MB/s | 133 kB     00:00    
(64/137): libxml2-2.10.3-2.fc38.ppc64le.rpm      41 MB/s | 780 kB     00:00    
(65/137): libyaml-0.2.5-8.fc38.ppc64le.rpm      3.5 MB/s |  70 kB     00:00    
(66/137): lua-libs-5.4.4-6.fc38.ppc64le.rpm     8.9 MB/s | 149 kB     00:00    
(67/137): lz4-libs-1.9.3-5.fc38.ppc64le.rpm     9.3 MB/s |  90 kB     00:00    
(68/137): mpdecimal-2.5.1-4.fc38.ppc64le.rpm     11 MB/s | 118 kB     00:00    
(69/137): mpfr-4.1.1-2.fc38.ppc64le.rpm          34 MB/s | 609 kB     00:00    
(70/137): ncurses-base-6.3-5.20221126.fc38.noar 6.0 MB/s |  62 kB     00:00    
(71/137): ncurses-libs-6.3-5.20221126.fc38.ppc6  28 MB/s | 374 kB     00:00    
(72/137): nettle-3.8-2.fc38.ppc64le.rpm          30 MB/s | 443 kB     00:00    
(73/137): npth-1.6-10.fc38.ppc64le.rpm          1.7 MB/s |  25 kB     00:00    
(74/137): openldap-2.6.3-1.fc38.ppc64le.rpm      24 MB/s | 288 kB     00:00    
(75/137): openssl-libs-3.0.5-6.fc38.ppc64le.rpm  48 MB/s | 2.2 MB     00:00    
(76/137): p11-kit-0.24.1-5.fc38.ppc64le.rpm     7.1 MB/s | 359 kB     00:00    
(77/137): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 3.1 MB/s | 150 kB     00:00    
(78/137): pcre2-10.40-1.fc38.1.ppc64le.rpm       18 MB/s | 242 kB     00:00    
(79/137): python3-dbus-1.3.2-1.fc38.ppc64le.rpm  13 MB/s | 152 kB     00:00    
(80/137): pcre2-syntax-10.40-1.fc38.1.noarch.rp  11 MB/s | 143 kB     00:00    
(81/137): python3-gpg-1.17.1-3.fc38.ppc64le.rpm  22 MB/s | 285 kB     00:00    
(82/137): python3-hawkey-0.68.0-1.fc38.ppc64le. 8.3 MB/s | 109 kB     00:00    
(83/137): python3-libcomps-0.1.18-4.fc38.ppc64l 4.2 MB/s |  53 kB     00:00    
(84/137): python3-libdnf-0.68.0-1.fc38.ppc64le.  42 MB/s | 815 kB     00:00    
(85/137): libgcc-13.0.0-0.4.fc38.ppc64le.rpm    367 kB/s |  88 kB     00:00    
(86/137): libgomp-13.0.0-0.4.fc38.ppc64le.rpm   1.0 MB/s | 314 kB     00:00    
(87/137): audit-libs-3.0.9-2.fc38.ppc64le.rpm   1.1 MB/s | 130 kB     00:00    
(88/137): basesystem-11-14.fc37.noarch.rpm       94 kB/s | 7.0 kB     00:00    
(89/137): ca-certificates-2022.2.54-5.fc37.noar  37 MB/s | 829 kB     00:00    
(90/137): crypto-policies-20221215-1.gita4c31a3  16 MB/s |  90 kB     00:00    
(91/137): dnf-data-4.14.0-1.fc38.noarch.rpm      21 MB/s |  43 kB     00:00    
(92/137): dnf-plugins-core-4.3.1-1.fc38.noarch.  19 MB/s |  34 kB     00:00    
(93/137): dnf-4.14.0-1.fc38.noarch.rpm           43 MB/s | 480 kB     00:00    
(94/137): fedora-gpg-keys-38-0.3.noarch.rpm      21 MB/s | 125 kB     00:00    
(95/137): fedora-release-38-0.6.noarch.rpm      7.3 MB/s |  11 kB     00:00    
(96/137): libstdc++-13.0.0-0.4.fc38.ppc64le.rpm 2.4 MB/s | 932 kB     00:00    
(97/137): fedora-release-common-38-0.6.noarch.r 4.2 MB/s |  21 kB     00:00    
(98/137): fedora-release-identity-basic-38-0.6. 2.2 MB/s |  11 kB     00:00    
(99/137): fedora-repos-38-0.3.noarch.rpm        201 kB/s |  10 kB     00:00    
(100/137): filesystem-3.18-2.fc37.ppc64le.rpm    45 MB/s | 1.1 MB     00:00    
(101/137): glibc-common-2.36.9000-19.fc38.ppc64  41 MB/s | 322 kB     00:00    
(102/137): glibc-minimal-langpack-2.36.9000-19.  21 MB/s |  30 kB     00:00    
(103/137): libblkid-2.38.1-3.fc38.ppc64le.rpm    33 MB/s | 122 kB     00:00    
(104/137): libmount-2.38.1-3.fc38.ppc64le.rpm    35 MB/s | 154 kB     00:00    
(105/137): glibc-2.36.9000-19.fc38.ppc64le.rpm   43 MB/s | 2.2 MB     00:00    
(106/137): libsmartcols-2.38.1-3.fc38.ppc64le.r 6.2 MB/s |  70 kB     00:00    
(107/137): libuuid-2.38.1-3.fc38.ppc64le.rpm     18 MB/s |  29 kB     00:00    
(108/137): popt-1.19-1.fc38.ppc64le.rpm          29 MB/s |  71 kB     00:00    
(109/137): publicsuffix-list-dafsa-20221208-1.f  26 MB/s |  59 kB     00:00    
(110/137): libzstd-1.5.2-3.fc37.ppc64le.rpm      42 MB/s | 316 kB     00:00    
(111/137): python-setuptools-wheel-65.5.1-1.fc3  38 MB/s | 715 kB     00:00    
(112/137): python3-3.11.1-1.fc38.ppc64le.rpm     16 MB/s |  27 kB     00:00    
(113/137): python-pip-wheel-22.3.1-1.fc38.noarc  47 MB/s | 1.4 MB     00:00    
(114/137): python3-distro-1.8.0-1.fc38.noarch.r  26 MB/s |  49 kB     00:00    
(115/137): python3-dateutil-2.8.2-4.fc37.noarch  26 MB/s | 361 kB     00:00    
(116/137): python3-dnf-4.14.0-1.fc38.noarch.rpm  47 MB/s | 607 kB     00:00    
(117/137): python3-dnf-plugins-core-4.3.1-1.fc3  26 MB/s | 277 kB     00:00    
(118/137): python3-rpm-4.18.0-8.fc38.ppc64le.rp  35 MB/s | 101 kB     00:00    
(119/137): python3-six-1.16.0-8.fc37.noarch.rpm  25 MB/s |  42 kB     00:00    
(120/137): readline-8.2-2.fc38.ppc64le.rpm       44 MB/s | 228 kB     00:00    
(121/137): rpm-4.18.0-8.fc38.ppc64le.rpm         52 MB/s | 568 kB     00:00    
(122/137): rpm-build-libs-4.18.0-8.fc38.ppc64le  41 MB/s | 103 kB     00:00    
(123/137): rpm-libs-4.18.0-8.fc38.ppc64le.rpm    42 MB/s | 355 kB     00:00    
(124/137): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm  46 MB/s | 1.4 MB     00:00    
(125/137): rpm-sign-libs-4.18.0-8.fc38.ppc64le.  14 MB/s |  27 kB     00:00    
(126/137): sed-4.8-11.fc37.ppc64le.rpm           38 MB/s | 313 kB     00:00    
(127/137): setup-2.14.3-1.fc38.noarch.rpm        25 MB/s | 152 kB     00:00    
(128/137): fedora-repos-rawhide-38-0.3.noarch.r  38 kB/s | 9.7 kB     00:00    
(129/137): shadow-utils-4.13-3.fc38.ppc64le.rpm  43 MB/s | 1.3 MB     00:00    
(130/137): systemd-libs-252.4-598.fc38.ppc64le.  34 MB/s | 666 kB     00:00    
(131/137): sqlite-libs-3.40.0-1.fc38.ppc64le.rp  21 MB/s | 776 kB     00:00    
(132/137): tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le.  30 MB/s | 631 kB     00:00    
(133/137): xz-libs-5.2.9-1.fc38.ppc64le.rpm      26 MB/s | 104 kB     00:00    
(134/137): zchunk-libs-1.2.3-1.fc38.ppc64le.rpm  18 MB/s |  55 kB     00:00    
(135/137): tzdata-2022g-1.fc38.noarch.rpm        24 MB/s | 716 kB     00:00    
(136/137): zlib-1.2.13-1.fc38.ppc64le.rpm        12 MB/s | 100 kB     00:00    
(137/137): python3-libs-3.11.1-1.fc38.ppc64le.r  44 MB/s | 9.7 MB     00:00    
--------------------------------------------------------------------------------
Total                                            38 MB/s |  60 MB     00:01     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.ppc64le                         1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.0.0-0.4.fc38.ppc64le                       1/137 
  Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le                       1/137 
  Installing       : crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/137 
  Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc     2/137 
  Installing       : tzdata-2022g-1.fc38.noarch                           3/137 
  Installing       : fedora-release-identity-basic-38-0.6.noarch          4/137 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch         5/137 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       6/137 
  Installing       : fedora-gpg-keys-38-0.3.noarch                        7/137 
  Installing       : fedora-release-38-0.6.noarch                         8/137 
  Installing       : fedora-release-common-38-0.6.noarch                  9/137 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  10/137 
  Installing       : fedora-repos-38-0.3.noarch                          11/137 
  Installing       : setup-2.14.3-1.fc38.noarch                          12/137 
  Running scriptlet: setup-2.14.3-1.fc38.noarch                          12/137 
  Installing       : filesystem-3.18-2.fc37.ppc64le                      13/137 
  Installing       : basesystem-11-14.fc37.noarch                        14/137 
  Installing       : pcre2-syntax-10.40-1.fc38.1.noarch                  15/137 
  Installing       : ncurses-base-6.3-5.20221126.fc38.noarch             16/137 
  Installing       : ncurses-libs-6.3-5.20221126.fc38.ppc64le            17/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.ppc64le                     18/137 
  Installing       : glibc-2.36.9000-19.fc38.ppc64le                     18/137 
  Running scriptlet: glibc-2.36.9000-19.fc38.ppc64le                     18/137 
  Installing       : bash-5.2.9-3.fc38.ppc64le                           19/137 
  Running scriptlet: bash-5.2.9-3.fc38.ppc64le                           19/137 
  Installing       : glibc-common-2.36.9000-19.fc38.ppc64le              20/137 
  Installing       : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le    21/137 
  Installing       : zlib-1.2.13-1.fc38.ppc64le                          22/137 
  Installing       : bzip2-libs-1.0.8-12.fc38.ppc64le                    23/137 
  Installing       : xz-libs-5.2.9-1.fc38.ppc64le                        24/137 
  Installing       : libzstd-1.5.2-3.fc37.ppc64le                        25/137 
  Installing       : sqlite-libs-3.40.0-1.fc38.ppc64le                   26/137 
  Installing       : gmp-1:6.2.1-3.fc38.ppc64le                          27/137 
  Installing       : libcap-2.48-5.fc38.ppc64le                          28/137 
  Installing       : libgpg-error-1.46-1.fc38.ppc64le                    29/137 
  Installing       : popt-1.19-1.fc38.ppc64le                            30/137 
  Installing       : libxml2-2.10.3-2.fc38.ppc64le                       31/137 
  Installing       : lua-libs-5.4.4-6.fc38.ppc64le                       32/137 
  Installing       : libstdc++-13.0.0-0.4.fc38.ppc64le                   33/137 
  Installing       : libuuid-2.38.1-3.fc38.ppc64le                       34/137 
  Installing       : elfutils-libelf-0.188-3.fc38.ppc64le                35/137 
  Installing       : file-libs-5.42-4.fc38.ppc64le                       36/137 
  Installing       : libattr-2.5.1-5.fc38.ppc64le                        37/137 
  Installing       : libacl-2.3.1-4.fc38.ppc64le                         38/137 
  Installing       : libffi-3.4.4-1.fc38.ppc64le                         39/137 
  Installing       : p11-kit-0.24.1-5.fc38.ppc64le                       40/137 
  Installing       : libunistring-1.0-2.fc38.ppc64le                     41/137 
  Installing       : libidn2-2.3.4-1.fc38.ppc64le                        42/137 
  Installing       : libxcrypt-4.4.33-5.fc38.ppc64le                     43/137 
  Installing       : pcre2-10.40-1.fc38.1.ppc64le                        44/137 
  Installing       : readline-8.2-2.fc38.ppc64le                         45/137 
  Installing       : libassuan-2.5.5-5.fc38.ppc64le                      46/137 
  Installing       : nettle-3.8-2.fc38.ppc64le                           47/137 
  Installing       : rpm-sequoia-1.2.0-1.fc38.ppc64le                    48/137 
  Installing       : expat-2.5.0-1.fc38.ppc64le                          49/137 
  Installing       : gdbm-libs-1:1.23-2.fc38.ppc64le                     50/137 
  Installing       : json-c-0.16-3.fc38.ppc64le                          51/137 
  Installing       : keyutils-libs-1.6.1-5.fc38.ppc64le                  52/137 
  Installing       : libcom_err-1.46.5-3.fc38.ppc64le                    53/137 
  Installing       : libsepol-3.4-4.fc38.ppc64le                         54/137 
  Installing       : libselinux-3.4-6.fc38.ppc64le                       55/137 
  Installing       : sed-4.8-11.fc37.ppc64le                             56/137 
  Installing       : libtasn1-4.19.0-1.fc38.ppc64le                      57/137 
  Installing       : lz4-libs-1.9.3-5.fc38.ppc64le                       58/137 
  Installing       : libgomp-13.0.0-0.4.fc38.ppc64le                     59/137 
  Installing       : libsmartcols-2.38.1-3.fc38.ppc64le                  60/137 
  Installing       : libb2-0.98.1-7.fc38.ppc64le                         61/137 
  Installing       : systemd-libs-252.4-598.fc38.ppc64le                 62/137 
  Installing       : dbus-libs-1:1.14.4-1.fc38.ppc64le                   63/137 
  Installing       : findutils-1:4.9.0-2.fc38.ppc64le                    64/137 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le                65/137 
  Installing       : libcomps-0.1.18-4.fc38.ppc64le                      66/137 
  Installing       : grep-3.8-1.fc38.ppc64le                             67/137 
  Installing       : libpsl-0.21.1-6.fc38.ppc64le                        68/137 
  Installing       : libblkid-2.38.1-3.fc38.ppc64le                      69/137 
  Installing       : libmount-2.38.1-3.fc38.ppc64le                      70/137 
  Installing       : mpdecimal-2.5.1-4.fc38.ppc64le                      71/137 
  Installing       : libgcrypt-1.10.1-6.fc38.ppc64le                     72/137 
  Installing       : libksba-1.6.3-1.fc38.ppc64le                        73/137 
  Installing       : mpfr-4.1.1-2.fc38.ppc64le                           74/137 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     75/137 
  Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch     75/137 
  Installing       : elfutils-libs-0.188-3.fc38.ppc64le                  76/137 
  Installing       : alternatives-1.21-1.fc38.ppc64le                    77/137 
  Installing       : p11-kit-trust-0.24.1-5.fc38.ppc64le                 78/137 
  Running scriptlet: p11-kit-trust-0.24.1-5.fc38.ppc64le                 78/137 
  Installing       : gnutls-3.7.8-9.fc38.ppc64le                         79/137 
  Installing       : glib2-2.74.1-2.fc38.ppc64le                         80/137 
  Installing       : libbrotli-1.0.9-9.fc38.ppc64le                      81/137 
  Installing       : libcap-ng-0.8.3-4.fc38.ppc64le                      82/137 
  Installing       : audit-libs-3.0.9-2.fc38.ppc64le                     83/137 
  Installing       : rpm-libs-4.18.0-8.fc38.ppc64le                      84/137 
  Installing       : rpm-build-libs-4.18.0-8.fc38.ppc64le                85/137 
  Installing       : libsemanage-3.4-6.fc38.ppc64le                      86/137 
  Installing       : shadow-utils-2:4.13-3.fc38.ppc64le                  87/137 
  Installing       : libnghttp2-1.51.0-1.fc38.ppc64le                    88/137 
  Installing       : libsigsegv-2.14-3.fc38.ppc64le                      89/137 
  Installing       : gawk-5.1.1-4.fc38.ppc64le                           90/137 
  Installing       : libverto-0.3.2-4.fc38.ppc64le                       91/137 
  Installing       : libyaml-0.2.5-8.fc38.ppc64le                        92/137 
  Installing       : libmodulemd-2.14.0-4.fc38.ppc64le                   93/137 
  Installing       : npth-1.6-10.fc38.ppc64le                            94/137 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                  95/137 
  Installing       : libreport-filesystem-2.17.6-1.fc38.noarch           96/137 
  Installing       : dnf-data-4.14.0-1.fc38.noarch                       97/137 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : coreutils-common-9.1-8.fc38.ppc64le                 98/137 
  Installing       : openssl-libs-1:3.0.5-6.fc38.ppc64le                 99/137 
  Installing       : coreutils-9.1-8.fc38.ppc64le                       100/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            101/137 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch            101/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            101/137 
  Installing       : krb5-libs-1.20.1-3.fc38.ppc64le                    102/137 
  Installing       : libtirpc-1.3.3-0.fc38.ppc64le                      103/137 
  Installing       : libfsverity-1.4-8.fc38.ppc64le                     104/137 
  Installing       : zchunk-libs-1.2.3-1.fc38.ppc64le                   105/137 
  Installing       : libsolv-0.7.22-3.fc38.ppc64le                      106/137 
  Installing       : libnsl2-2.0.0-4.fc38.ppc64le                       107/137 
  Installing       : libssh-0.10.4-2.fc38.ppc64le                       108/137 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch              109/137 
  Installing       : python3-3.11.1-1.fc38.ppc64le                      110/137 
  Installing       : python3-libs-3.11.1-1.fc38.ppc64le                 111/137 
  Installing       : python3-dbus-1.3.2-1.fc38.ppc64le                  112/137 
  Installing       : python3-libcomps-0.1.18-4.fc38.ppc64le             113/137 
  Installing       : python3-distro-1.8.0-1.fc38.noarch                 114/137 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   115/137 
  Installing       : python3-dateutil-1:2.8.2-4.fc37.noarch             116/137 
  Installing       : libarchive-3.6.1-3.fc38.ppc64le                    117/137 
  Installing       : libevent-2.1.12-7.fc38.ppc64le                     118/137 
  Installing       : openldap-2.6.3-1.fc38.ppc64le                      119/137 
  Installing       : libcurl-7.87.0-1.fc38.ppc64le                      120/137 
  Installing       : gnupg2-2.3.8-1.fc38.ppc64le                        121/137 
  Installing       : gpgme-1.17.1-3.fc38.ppc64le                        122/137 
  Installing       : librepo-1.15.1-1.fc38.ppc64le                      123/137 
  Installing       : libdnf-0.68.0-1.fc38.ppc64le                       124/137 
  Installing       : python3-libdnf-0.68.0-1.fc38.ppc64le               125/137 
  Installing       : python3-hawkey-0.68.0-1.fc38.ppc64le               126/137 
  Installing       : python3-gpg-1.17.1-3.fc38.ppc64le                  127/137 
  Installing       : curl-7.87.0-1.fc38.ppc64le                         128/137 
  Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le                129/137 
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'

  Installing       : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le                129/137 
  Installing       : ima-evm-utils-1.4-6.fc38.ppc64le                   130/137 
  Installing       : rpm-sign-libs-4.18.0-8.fc38.ppc64le                131/137 
  Installing       : python3-rpm-4.18.0-8.fc38.ppc64le                  132/137 
  Installing       : python3-dnf-4.14.0-1.fc38.noarch                   133/137 
  Installing       : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       134/137 
  Installing       : dnf-plugins-core-4.3.1-1.fc38.noarch               135/137 
  Installing       : dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: dnf-4.14.0-1.fc38.noarch                           136/137 
  Running scriptlet: rpm-4.18.0-8.fc38.ppc64le                          137/137 
  Installing       : rpm-4.18.0-8.fc38.ppc64le                          137/137 
  Running scriptlet: filesystem-3.18-2.fc37.ppc64le                     137/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            137/137 
  Running scriptlet: rpm-4.18.0-8.fc38.ppc64le                          137/137 
  Verifying        : alternatives-1.21-1.fc38.ppc64le                     1/137 
  Verifying        : bash-5.2.9-3.fc38.ppc64le                            2/137 
  Verifying        : bzip2-libs-1.0.8-12.fc38.ppc64le                     3/137 
  Verifying        : coreutils-9.1-8.fc38.ppc64le                         4/137 
  Verifying        : coreutils-common-9.1-8.fc38.ppc64le                  5/137 
  Verifying        : curl-7.87.0-1.fc38.ppc64le                           6/137 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le                 7/137 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.ppc64le                    8/137 
  Verifying        : elfutils-default-yama-scope-0.188-3.fc38.noarch      9/137 
  Verifying        : elfutils-libelf-0.188-3.fc38.ppc64le                10/137 
  Verifying        : elfutils-libs-0.188-3.fc38.ppc64le                  11/137 
  Verifying        : expat-2.5.0-1.fc38.ppc64le                          12/137 
  Verifying        : file-libs-5.42-4.fc38.ppc64le                       13/137 
  Verifying        : findutils-1:4.9.0-2.fc38.ppc64le                    14/137 
  Verifying        : gawk-5.1.1-4.fc38.ppc64le                           15/137 
  Verifying        : gdbm-libs-1:1.23-2.fc38.ppc64le                     16/137 
  Verifying        : glib2-2.74.1-2.fc38.ppc64le                         17/137 
  Verifying        : gmp-1:6.2.1-3.fc38.ppc64le                          18/137 
  Verifying        : gnupg2-2.3.8-1.fc38.ppc64le                         19/137 
  Verifying        : gnutls-3.7.8-9.fc38.ppc64le                         20/137 
  Verifying        : gpgme-1.17.1-3.fc38.ppc64le                         21/137 
  Verifying        : grep-3.8-1.fc38.ppc64le                             22/137 
  Verifying        : ima-evm-utils-1.4-6.fc38.ppc64le                    23/137 
  Verifying        : json-c-0.16-3.fc38.ppc64le                          24/137 
  Verifying        : keyutils-libs-1.6.1-5.fc38.ppc64le                  25/137 
  Verifying        : krb5-libs-1.20.1-3.fc38.ppc64le                     26/137 
  Verifying        : libacl-2.3.1-4.fc38.ppc64le                         27/137 
  Verifying        : libarchive-3.6.1-3.fc38.ppc64le                     28/137 
  Verifying        : libassuan-2.5.5-5.fc38.ppc64le                      29/137 
  Verifying        : libattr-2.5.1-5.fc38.ppc64le                        30/137 
  Verifying        : libb2-0.98.1-7.fc38.ppc64le                         31/137 
  Verifying        : libbrotli-1.0.9-9.fc38.ppc64le                      32/137 
  Verifying        : libcap-2.48-5.fc38.ppc64le                          33/137 
  Verifying        : libcap-ng-0.8.3-4.fc38.ppc64le                      34/137 
  Verifying        : libcom_err-1.46.5-3.fc38.ppc64le                    35/137 
  Verifying        : libcomps-0.1.18-4.fc38.ppc64le                      36/137 
  Verifying        : libcurl-7.87.0-1.fc38.ppc64le                       37/137 
  Verifying        : libdnf-0.68.0-1.fc38.ppc64le                        38/137 
  Verifying        : libevent-2.1.12-7.fc38.ppc64le                      39/137 
  Verifying        : libffi-3.4.4-1.fc38.ppc64le                         40/137 
  Verifying        : libfsverity-1.4-8.fc38.ppc64le                      41/137 
  Verifying        : libgcrypt-1.10.1-6.fc38.ppc64le                     42/137 
  Verifying        : libgpg-error-1.46-1.fc38.ppc64le                    43/137 
  Verifying        : libidn2-2.3.4-1.fc38.ppc64le                        44/137 
  Verifying        : libksba-1.6.3-1.fc38.ppc64le                        45/137 
  Verifying        : libmodulemd-2.14.0-4.fc38.ppc64le                   46/137 
  Verifying        : libnghttp2-1.51.0-1.fc38.ppc64le                    47/137 
  Verifying        : libnsl2-2.0.0-4.fc38.ppc64le                        48/137 
  Verifying        : libpsl-0.21.1-6.fc38.ppc64le                        49/137 
  Verifying        : librepo-1.15.1-1.fc38.ppc64le                       50/137 
  Verifying        : libreport-filesystem-2.17.6-1.fc38.noarch           51/137 
  Verifying        : libselinux-3.4-6.fc38.ppc64le                       52/137 
  Verifying        : libsemanage-3.4-6.fc38.ppc64le                      53/137 
  Verifying        : libsepol-3.4-4.fc38.ppc64le                         54/137 
  Verifying        : libsigsegv-2.14-3.fc38.ppc64le                      55/137 
  Verifying        : libsolv-0.7.22-3.fc38.ppc64le                       56/137 
  Verifying        : libssh-0.10.4-2.fc38.ppc64le                        57/137 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  58/137 
  Verifying        : libtasn1-4.19.0-1.fc38.ppc64le                      59/137 
  Verifying        : libtirpc-1.3.3-0.fc38.ppc64le                       60/137 
  Verifying        : libunistring-1.0-2.fc38.ppc64le                     61/137 
  Verifying        : libverto-0.3.2-4.fc38.ppc64le                       62/137 
  Verifying        : libxcrypt-4.4.33-5.fc38.ppc64le                     63/137 
  Verifying        : libxml2-2.10.3-2.fc38.ppc64le                       64/137 
  Verifying        : libyaml-0.2.5-8.fc38.ppc64le                        65/137 
  Verifying        : lua-libs-5.4.4-6.fc38.ppc64le                       66/137 
  Verifying        : lz4-libs-1.9.3-5.fc38.ppc64le                       67/137 
  Verifying        : mpdecimal-2.5.1-4.fc38.ppc64le                      68/137 
  Verifying        : mpfr-4.1.1-2.fc38.ppc64le                           69/137 
  Verifying        : ncurses-base-6.3-5.20221126.fc38.noarch             70/137 
  Verifying        : ncurses-libs-6.3-5.20221126.fc38.ppc64le            71/137 
  Verifying        : nettle-3.8-2.fc38.ppc64le                           72/137 
  Verifying        : npth-1.6-10.fc38.ppc64le                            73/137 
  Verifying        : openldap-2.6.3-1.fc38.ppc64le                       74/137 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.ppc64le                 75/137 
  Verifying        : p11-kit-0.24.1-5.fc38.ppc64le                       76/137 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.ppc64le                 77/137 
  Verifying        : pcre2-10.40-1.fc38.1.ppc64le                        78/137 
  Verifying        : pcre2-syntax-10.40-1.fc38.1.noarch                  79/137 
  Verifying        : python3-dbus-1.3.2-1.fc38.ppc64le                   80/137 
  Verifying        : python3-gpg-1.17.1-3.fc38.ppc64le                   81/137 
  Verifying        : python3-hawkey-0.68.0-1.fc38.ppc64le                82/137 
  Verifying        : python3-libcomps-0.1.18-4.fc38.ppc64le              83/137 
  Verifying        : python3-libdnf-0.68.0-1.fc38.ppc64le                84/137 
  Verifying        : libgcc-13.0.0-0.4.fc38.ppc64le                      85/137 
  Verifying        : libgomp-13.0.0-0.4.fc38.ppc64le                     86/137 
  Verifying        : libstdc++-13.0.0-0.4.fc38.ppc64le                   87/137 
  Verifying        : audit-libs-3.0.9-2.fc38.ppc64le                     88/137 
  Verifying        : basesystem-11-14.fc37.noarch                        89/137 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             90/137 
  Verifying        : crypto-policies-20221215-1.gita4c31a3.fc38.noarc    91/137 
  Verifying        : dnf-4.14.0-1.fc38.noarch                            92/137 
  Verifying        : dnf-data-4.14.0-1.fc38.noarch                       93/137 
  Verifying        : dnf-plugins-core-4.3.1-1.fc38.noarch                94/137 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       95/137 
  Verifying        : fedora-release-38-0.6.noarch                        96/137 
  Verifying        : fedora-release-common-38-0.6.noarch                 97/137 
  Verifying        : fedora-release-identity-basic-38-0.6.noarch         98/137 
  Verifying        : fedora-repos-38-0.3.noarch                          99/137 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                 100/137 
  Verifying        : filesystem-3.18-2.fc37.ppc64le                     101/137 
  Verifying        : glibc-2.36.9000-19.fc38.ppc64le                    102/137 
  Verifying        : glibc-common-2.36.9000-19.fc38.ppc64le             103/137 
  Verifying        : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le   104/137 
  Verifying        : libblkid-2.38.1-3.fc38.ppc64le                     105/137 
  Verifying        : libmount-2.38.1-3.fc38.ppc64le                     106/137 
  Verifying        : libsmartcols-2.38.1-3.fc38.ppc64le                 107/137 
  Verifying        : libuuid-2.38.1-3.fc38.ppc64le                      108/137 
  Verifying        : libzstd-1.5.2-3.fc37.ppc64le                       109/137 
  Verifying        : popt-1.19-1.fc38.ppc64le                           110/137 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     111/137 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch              112/137 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch       113/137 
  Verifying        : python3-3.11.1-1.fc38.ppc64le                      114/137 
  Verifying        : python3-dateutil-1:2.8.2-4.fc37.noarch             115/137 
  Verifying        : python3-distro-1.8.0-1.fc38.noarch                 116/137 
  Verifying        : python3-dnf-4.14.0-1.fc38.noarch                   117/137 
  Verifying        : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       118/137 
  Verifying        : python3-libs-3.11.1-1.fc38.ppc64le                 119/137 
  Verifying        : python3-rpm-4.18.0-8.fc38.ppc64le                  120/137 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   121/137 
  Verifying        : readline-8.2-2.fc38.ppc64le                        122/137 
  Verifying        : rpm-4.18.0-8.fc38.ppc64le                          123/137 
  Verifying        : rpm-build-libs-4.18.0-8.fc38.ppc64le               124/137 
  Verifying        : rpm-libs-4.18.0-8.fc38.ppc64le                     125/137 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.ppc64le                   126/137 
  Verifying        : rpm-sign-libs-4.18.0-8.fc38.ppc64le                127/137 
  Verifying        : sed-4.8-11.fc37.ppc64le                            128/137 
  Verifying        : setup-2.14.3-1.fc38.noarch                         129/137 
  Verifying        : shadow-utils-2:4.13-3.fc38.ppc64le                 130/137 
  Verifying        : sqlite-libs-3.40.0-1.fc38.ppc64le                  131/137 
  Verifying        : systemd-libs-252.4-598.fc38.ppc64le                132/137 
  Verifying        : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le                133/137 
  Verifying        : tzdata-2022g-1.fc38.noarch                         134/137 
  Verifying        : xz-libs-5.2.9-1.fc38.ppc64le                       135/137 
  Verifying        : zchunk-libs-1.2.3-1.fc38.ppc64le                   136/137 
  Verifying        : zlib-1.2.13-1.fc38.ppc64le                         137/137 
Installed products updated.

Installed:
  alternatives-1.21-1.fc38.ppc64le                                              
  audit-libs-3.0.9-2.fc38.ppc64le                                               
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.ppc64le                                                     
  bzip2-libs-1.0.8-12.fc38.ppc64le                                              
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.ppc64le                                                  
  coreutils-common-9.1-8.fc38.ppc64le                                           
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.ppc64le                                                    
  cyrus-sasl-lib-2.1.28-8.fc38.ppc64le                                          
  dbus-libs-1:1.14.4-1.fc38.ppc64le                                             
  dnf-4.14.0-1.fc38.noarch                                                      
  dnf-data-4.14.0-1.fc38.noarch                                                 
  dnf-plugins-core-4.3.1-1.fc38.noarch                                          
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.ppc64le                                          
  elfutils-libs-0.188-3.fc38.ppc64le                                            
  expat-2.5.0-1.fc38.ppc64le                                                    
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-4.fc38.ppc64le                                                 
  filesystem-3.18-2.fc37.ppc64le                                                
  findutils-1:4.9.0-2.fc38.ppc64le                                              
  gawk-5.1.1-4.fc38.ppc64le                                                     
  gdbm-libs-1:1.23-2.fc38.ppc64le                                               
  glib2-2.74.1-2.fc38.ppc64le                                                   
  glibc-2.36.9000-19.fc38.ppc64le                                               
  glibc-common-2.36.9000-19.fc38.ppc64le                                        
  glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le                              
  gmp-1:6.2.1-3.fc38.ppc64le                                                    
  gnupg2-2.3.8-1.fc38.ppc64le                                                   
  gnutls-3.7.8-9.fc38.ppc64le                                                   
  gpgme-1.17.1-3.fc38.ppc64le                                                   
  grep-3.8-1.fc38.ppc64le                                                       
  ima-evm-utils-1.4-6.fc38.ppc64le                                              
  json-c-0.16-3.fc38.ppc64le                                                    
  keyutils-libs-1.6.1-5.fc38.ppc64le                                            
  krb5-libs-1.20.1-3.fc38.ppc64le                                               
  libacl-2.3.1-4.fc38.ppc64le                                                   
  libarchive-3.6.1-3.fc38.ppc64le                                               
  libassuan-2.5.5-5.fc38.ppc64le                                                
  libattr-2.5.1-5.fc38.ppc64le                                                  
  libb2-0.98.1-7.fc38.ppc64le                                                   
  libblkid-2.38.1-3.fc38.ppc64le                                                
  libbrotli-1.0.9-9.fc38.ppc64le                                                
  libcap-2.48-5.fc38.ppc64le                                                    
  libcap-ng-0.8.3-4.fc38.ppc64le                                                
  libcom_err-1.46.5-3.fc38.ppc64le                                              
  libcomps-0.1.18-4.fc38.ppc64le                                                
  libcurl-7.87.0-1.fc38.ppc64le                                                 
  libdnf-0.68.0-1.fc38.ppc64le                                                  
  libevent-2.1.12-7.fc38.ppc64le                                                
  libffi-3.4.4-1.fc38.ppc64le                                                   
  libfsverity-1.4-8.fc38.ppc64le                                                
  libgcc-13.0.0-0.4.fc38.ppc64le                                                
  libgcrypt-1.10.1-6.fc38.ppc64le                                               
  libgomp-13.0.0-0.4.fc38.ppc64le                                               
  libgpg-error-1.46-1.fc38.ppc64le                                              
  libidn2-2.3.4-1.fc38.ppc64le                                                  
  libksba-1.6.3-1.fc38.ppc64le                                                  
  libmodulemd-2.14.0-4.fc38.ppc64le                                             
  libmount-2.38.1-3.fc38.ppc64le                                                
  libnghttp2-1.51.0-1.fc38.ppc64le                                              
  libnsl2-2.0.0-4.fc38.ppc64le                                                  
  libpsl-0.21.1-6.fc38.ppc64le                                                  
  librepo-1.15.1-1.fc38.ppc64le                                                 
  libreport-filesystem-2.17.6-1.fc38.noarch                                     
  libselinux-3.4-6.fc38.ppc64le                                                 
  libsemanage-3.4-6.fc38.ppc64le                                                
  libsepol-3.4-4.fc38.ppc64le                                                   
  libsigsegv-2.14-3.fc38.ppc64le                                                
  libsmartcols-2.38.1-3.fc38.ppc64le                                            
  libsolv-0.7.22-3.fc38.ppc64le                                                 
  libssh-0.10.4-2.fc38.ppc64le                                                  
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.ppc64le                                             
  libtasn1-4.19.0-1.fc38.ppc64le                                                
  libtirpc-1.3.3-0.fc38.ppc64le                                                 
  libunistring-1.0-2.fc38.ppc64le                                               
  libuuid-2.38.1-3.fc38.ppc64le                                                 
  libverto-0.3.2-4.fc38.ppc64le                                                 
  libxcrypt-4.4.33-5.fc38.ppc64le                                               
  libxml2-2.10.3-2.fc38.ppc64le                                                 
  libyaml-0.2.5-8.fc38.ppc64le                                                  
  libzstd-1.5.2-3.fc37.ppc64le                                                  
  lua-libs-5.4.4-6.fc38.ppc64le                                                 
  lz4-libs-1.9.3-5.fc38.ppc64le                                                 
  mpdecimal-2.5.1-4.fc38.ppc64le                                                
  mpfr-4.1.1-2.fc38.ppc64le                                                     
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.ppc64le                                      
  nettle-3.8-2.fc38.ppc64le                                                     
  npth-1.6-10.fc38.ppc64le                                                      
  openldap-2.6.3-1.fc38.ppc64le                                                 
  openssl-libs-1:3.0.5-6.fc38.ppc64le                                           
  p11-kit-0.24.1-5.fc38.ppc64le                                                 
  p11-kit-trust-0.24.1-5.fc38.ppc64le                                           
  pcre2-10.40-1.fc38.1.ppc64le                                                  
  pcre2-syntax-10.40-1.fc38.1.noarch                                            
  popt-1.19-1.fc38.ppc64le                                                      
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-1.fc38.ppc64le                                                 
  python3-dateutil-1:2.8.2-4.fc37.noarch                                        
  python3-dbus-1.3.2-1.fc38.ppc64le                                             
  python3-distro-1.8.0-1.fc38.noarch                                            
  python3-dnf-4.14.0-1.fc38.noarch                                              
  python3-dnf-plugins-core-4.3.1-1.fc38.noarch                                  
  python3-gpg-1.17.1-3.fc38.ppc64le                                             
  python3-hawkey-0.68.0-1.fc38.ppc64le                                          
  python3-libcomps-0.1.18-4.fc38.ppc64le                                        
  python3-libdnf-0.68.0-1.fc38.ppc64le                                          
  python3-libs-3.11.1-1.fc38.ppc64le                                            
  python3-rpm-4.18.0-8.fc38.ppc64le                                             
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.2-2.fc38.ppc64le                                                   
  rpm-4.18.0-8.fc38.ppc64le                                                     
  rpm-build-libs-4.18.0-8.fc38.ppc64le                                          
  rpm-libs-4.18.0-8.fc38.ppc64le                                                
  rpm-sequoia-1.2.0-1.fc38.ppc64le                                              
  rpm-sign-libs-4.18.0-8.fc38.ppc64le                                           
  sed-4.8-11.fc37.ppc64le                                                       
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.ppc64le                                            
  sqlite-libs-3.40.0-1.fc38.ppc64le                                             
  systemd-libs-252.4-598.fc38.ppc64le                                           
  tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le                                           
  tzdata-2022g-1.fc38.noarch                                                    
  xz-libs-5.2.9-1.fc38.ppc64le                                                  
  zchunk-libs-1.2.3-1.fc38.ppc64le                                              
  zlib-1.2.13-1.fc38.ppc64le                                                    

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  30 MB/s |  30 MB     00:00    
Additional repo https_jakub_fedorapeople_org_fe 124 kB/s |  84 kB     00:00    
fedora                                           16 MB/s |  60 MB     00:03    
Last metadata expiration check: 0:00:01 ago on Mon Dec 26 08:23:21 2022.
Dependencies resolved.
==========================================================================================================================
 Package                         Arch     Version                    Repository                                       Size
==========================================================================================================================
Installing group/module packages:
 bash                            ppc64le  5.2.9-3.fc38               copr_base                                       1.9 M
 bzip2                           ppc64le  1.0.8-12.fc38              copr_base                                        54 k
 coreutils                       ppc64le  9.1-8.fc38                 copr_base                                       1.3 M
 cpio                            ppc64le  2.13-13.fc38               copr_base                                       277 k
 diffutils                       ppc64le  3.8-3.fc38                 copr_base                                       381 k
 fedora-release-common           noarch   38-0.6                     fedora                                           21 k
 findutils                       ppc64le  1:4.9.0-2.fc38             copr_base                                       530 k
 gawk                            ppc64le  5.1.1-4.fc38               copr_base                                       1.0 M
 glibc-minimal-langpack          ppc64le  2.36.9000-19.fc38          fedora                                           30 k
 grep                            ppc64le  3.8-1.fc38                 copr_base                                       293 k
 gzip                            ppc64le  1.12-2.fc38                copr_base                                       163 k
 info                            ppc64le  7.0.1-1.fc38               fedora                                          199 k
 patch                           ppc64le  2.7.6-17.fc38              copr_base                                       136 k
 redhat-rpm-config               noarch   235-1.fc38                 fedora                                           80 k
 rpm-build                       ppc64le  4.18.0-8.fc38              fedora                                           78 k
 sed                             ppc64le  4.8-11.fc37                fedora                                          313 k
 shadow-utils                    ppc64le  2:4.13-3.fc38              fedora                                          1.3 M
 tar                             ppc64le  2:1.34-5.fc38              fedora                                          914 k
 unzip                           ppc64le  6.0-58.fc38                fedora                                          188 k
 util-linux                      ppc64le  2.38.1-3.fc38              fedora                                          2.4 M
 which                           ppc64le  2.21-36.fc38               fedora                                           42 k
 xz                              ppc64le  5.2.9-1.fc38               fedora                                          310 k
Installing dependencies:
 alternatives                    ppc64le  1.21-1.fc38                copr_base                                        41 k
 ansible-srpm-macros             noarch   1-8.1.fc38                 fedora                                          8.6 k
 audit-libs                      ppc64le  3.0.9-2.fc38               fedora                                          130 k
 authselect                      ppc64le  1.4.2-1.fc38               copr_base                                       141 k
 authselect-libs                 ppc64le  1.4.2-1.fc38               copr_base                                       241 k
 basesystem                      noarch   11-14.fc37                 fedora                                          7.0 k
 binutils                        ppc64le  2.39-6.fc38                copr_base                                       6.2 M
 binutils-gold                   ppc64le  2.39-6.fc38                copr_base                                       1.1 M
 bzip2-libs                      ppc64le  1.0.8-12.fc38              copr_base                                        48 k
 ca-certificates                 noarch   2022.2.54-5.fc37           fedora                                          829 k
 coreutils-common                ppc64le  9.1-8.fc38                 copr_base                                       2.0 M
 cracklib                        ppc64le  2.9.7-30.fc38              copr_base                                        84 k
 crypto-policies                 noarch   20221215-1.gita4c31a3.fc38 fedora                                           90 k
 curl                            ppc64le  7.87.0-1.fc38              copr_base                                       348 k
 cyrus-sasl-lib                  ppc64le  2.1.28-8.fc38              copr_base                                       882 k
 debugedit                       ppc64le  5.0-5.fc37                 fedora                                           80 k
 dwz                             ppc64le  0.15-1.fc38                copr_base                                       143 k
 ed                              ppc64le  1.18-2.fc38                copr_base                                        82 k
 efi-srpm-macros                 noarch   5-6.fc37                   fedora                                           22 k
 elfutils                        ppc64le  0.188-3.fc38               copr_base                                       555 k
 elfutils-debuginfod-client      ppc64le  0.188-3.fc38               copr_base                                        42 k
 elfutils-default-yama-scope     noarch   0.188-3.fc38               copr_base                                        16 k
 elfutils-libelf                 ppc64le  0.188-3.fc38               copr_base                                       205 k
 elfutils-libs                   ppc64le  0.188-3.fc38               copr_base                                       291 k
 fedora-gpg-keys                 noarch   38-0.3                     fedora                                          125 k
 fedora-release                  noarch   38-0.6                     fedora                                           11 k
 fedora-release-identity-basic   noarch   38-0.6                     fedora                                           11 k
 fedora-repos                    noarch   38-0.3                     fedora                                           10 k
 fedora-repos-rawhide            noarch   38-0.3                     fedora                                          9.7 k
 file                            ppc64le  5.42-4.fc38                copr_base                                        50 k
 file-libs                       ppc64le  5.42-4.fc38                copr_base                                       688 k
 filesystem                      ppc64le  3.18-2.fc37                fedora                                          1.1 M
 fonts-srpm-macros               noarch   1:2.0.5-10.fc38            fedora                                           26 k
 fpc-srpm-macros                 noarch   1.3-6.fc37                 fedora                                          7.7 k
 gdb-minimal                     ppc64le  12.1-10.fc38               fedora                                          3.7 M
 gdbm-libs                       ppc64le  1:1.23-2.fc38              copr_base                                        62 k
 ghc-srpm-macros                 noarch   1.5.0-7.fc37               fedora                                          7.8 k
 glibc                           ppc64le  2.36.9000-19.fc38          fedora                                          2.2 M
 glibc-common                    ppc64le  2.36.9000-19.fc38          fedora                                          322 k
 glibc-gconv-extra               ppc64le  2.36.9000-19.fc38          fedora                                          1.9 M
 gmp                             ppc64le  1:6.2.1-3.fc38             copr_base                                       304 k
 gnat-srpm-macros                noarch   4-16.fc37                  fedora                                          8.3 k
 go-srpm-macros                  noarch   3.2.0-1.fc38               fedora                                           27 k
 jansson                         ppc64le  2.13.1-5.fc38              copr_base                                        50 k
 kernel-srpm-macros              noarch   1.0-15.fc37                fedora                                          9.4 k
 keyutils-libs                   ppc64le  1.6.1-5.fc38               copr_base                                        33 k
 krb5-libs                       ppc64le  1.20.1-3.fc38              copr_base                                       805 k
 libacl                          ppc64le  2.3.1-4.fc38               copr_base                                        26 k
 libarchive                      ppc64le  3.6.1-3.fc38               copr_base                                       464 k
 libattr                         ppc64le  2.5.1-5.fc38               copr_base                                        19 k
 libblkid                        ppc64le  2.38.1-3.fc38              fedora                                          122 k
 libbrotli                       ppc64le  1.0.9-9.fc38               copr_base                                       345 k
 libcap                          ppc64le  2.48-5.fc38                copr_base                                        73 k
 libcap-ng                       ppc64le  0.8.3-4.fc38               copr_base                                        34 k
 libcom_err                      ppc64le  1.46.5-3.fc38              copr_base                                        26 k
 libcurl                         ppc64le  7.87.0-1.fc38              copr_base                                       334 k
 libdb                           ppc64le  5.3.28-54.fc38             copr_base                                       842 k
 libeconf                        ppc64le  0.4.0-4.fc38               copr_base                                        31 k
 libevent                        ppc64le  2.1.12-7.fc38              copr_base                                       276 k
 libfdisk                        ppc64le  2.38.1-3.fc38              fedora                                          176 k
 libffi                          ppc64le  3.4.4-1.fc38               copr_base                                        39 k
 libgcc                          ppc64le  13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch   88 k
 libgomp                         ppc64le  13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  314 k
 libidn2                         ppc64le  2.3.4-1.fc38               copr_base                                       157 k
 libmount                        ppc64le  2.38.1-3.fc38              fedora                                          154 k
 libnghttp2                      ppc64le  1.51.0-1.fc38              copr_base                                        85 k
 libnsl2                         ppc64le  2.0.0-4.fc38               copr_base                                        33 k
 libpkgconf                      ppc64le  1.8.0-3.fc37               fedora                                           40 k
 libpsl                          ppc64le  0.21.1-6.fc38              copr_base                                        67 k
 libpwquality                    ppc64le  1.4.5-1.fc38               fedora                                          122 k
 librtas                         ppc64le  2.0.3-1.fc38               copr_base                                        68 k
 libselinux                      ppc64le  3.4-6.fc38                 copr_base                                       100 k
 libsemanage                     ppc64le  3.4-6.fc38                 copr_base                                       131 k
 libsepol                        ppc64le  3.4-4.fc38                 copr_base                                       355 k
 libsigsegv                      ppc64le  2.14-3.fc38                copr_base                                        28 k
 libsmartcols                    ppc64le  2.38.1-3.fc38              fedora                                           70 k
 libssh                          ppc64le  0.10.4-2.fc38              copr_base                                       236 k
 libssh-config                   noarch   0.10.4-2.fc38              copr_base                                       9.2 k
 libstdc++                       ppc64le  13.0.0-0.4.fc38            https_jakub_fedorapeople_org_fedora_gcc13_arch  932 k
 libtasn1                        ppc64le  4.19.0-1.fc38              copr_base                                        81 k
 libtirpc                        ppc64le  1.3.3-0.fc38               copr_base                                       108 k
 libunistring                    ppc64le  1.0-2.fc38                 copr_base                                       575 k
 libutempter                     ppc64le  1.2.1-7.fc38               copr_base                                        27 k
 libuuid                         ppc64le  2.38.1-3.fc38              fedora                                           29 k
 libverto                        ppc64le  0.3.2-4.fc38               copr_base                                        23 k
 libxcrypt                       ppc64le  4.4.33-5.fc38              copr_base                                       133 k
 libxml2                         ppc64le  2.10.3-2.fc38              copr_base                                       780 k
 libzstd                         ppc64le  1.5.2-3.fc37               fedora                                          316 k
 lua-libs                        ppc64le  5.4.4-6.fc38               copr_base                                       149 k
 lua-srpm-macros                 noarch   1-7.fc37                   fedora                                          8.8 k
 lz4-libs                        ppc64le  1.9.3-5.fc38               copr_base                                        90 k
 mpfr                            ppc64le  4.1.1-2.fc38               copr_base                                       609 k
 ncurses-base                    noarch   6.3-5.20221126.fc38        copr_base                                        62 k
 ncurses-libs                    ppc64le  6.3-5.20221126.fc38        copr_base                                       374 k
 nettle                          ppc64le  3.8-2.fc38                 copr_base                                       443 k
 nim-srpm-macros                 noarch   3-7.fc37                   fedora                                          8.4 k
 ocaml-srpm-macros               noarch   7-2.fc37                   fedora                                           13 k
 openblas-srpm-macros            noarch   2-12.fc37                  fedora                                          7.5 k
 openldap                        ppc64le  2.6.3-1.fc38               copr_base                                       288 k
 openssl-libs                    ppc64le  1:3.0.5-6.fc38             copr_base                                       2.2 M
 p11-kit                         ppc64le  0.24.1-5.fc38              copr_base                                       359 k
 p11-kit-trust                   ppc64le  0.24.1-5.fc38              copr_base                                       150 k
 package-notes-srpm-macros       noarch   0.5-6.fc38                 fedora                                           11 k
 pam                             ppc64le  1.5.2-15.fc38              copr_base                                       569 k
 pam-libs                        ppc64le  1.5.2-15.fc38              copr_base                                        64 k
 pcre2                           ppc64le  10.40-1.fc38.1             copr_base                                       242 k
 pcre2-syntax                    noarch   10.40-1.fc38.1             copr_base                                       143 k
 perl-srpm-macros                noarch   1-47.fc38                  fedora                                          8.2 k
 pkgconf                         ppc64le  1.8.0-3.fc37               fedora                                           43 k
 pkgconf-m4                      noarch   1.8.0-3.fc37               fedora                                           14 k
 pkgconf-pkg-config              ppc64le  1.8.0-3.fc37               fedora                                           10 k
 popt                            ppc64le  1.19-1.fc38                fedora                                           71 k
 publicsuffix-list-dafsa         noarch   20221208-1.fc38            fedora                                           59 k
 python-srpm-macros              noarch   3.11-6.fc38                fedora                                           25 k
 qt5-srpm-macros                 noarch   5.15.7-1.fc38              fedora                                          7.9 k
 readline                        ppc64le  8.2-2.fc38                 fedora                                          228 k
 rpm                             ppc64le  4.18.0-8.fc38              fedora                                          568 k
 rpm-build-libs                  ppc64le  4.18.0-8.fc38              fedora                                          103 k
 rpm-libs                        ppc64le  4.18.0-8.fc38              fedora                                          355 k
 rpm-sequoia                     ppc64le  1.2.0-1.fc38               fedora                                          1.4 M
 rpmautospec-rpm-macros          noarch   0.3.1-1.fc38               fedora                                          8.8 k
 rust-srpm-macros                noarch   23-1.fc38                  fedora                                          9.4 k
 setup                           noarch   2.14.3-1.fc38              fedora                                          152 k
 sqlite-libs                     ppc64le  3.40.0-1.fc38              fedora                                          776 k
 systemd-libs                    ppc64le  252.4-598.fc38             fedora                                          666 k
 tzdata                          noarch   2022g-1.fc38               fedora                                          716 k
 util-linux-core                 ppc64le  2.38.1-3.fc38              fedora                                          515 k
 xxhash-libs                     ppc64le  0.8.1-3.fc37               fedora                                           38 k
 xz-libs                         ppc64le  5.2.9-1.fc38               fedora                                          104 k
 zip                             ppc64le  3.0-35.fc38                fedora                                          267 k
 zlib                            ppc64le  1.2.13-1.fc38              fedora                                          100 k
 zstd                            ppc64le  1.5.2-3.fc37               fedora                                          466 k
Installing Groups:
 Buildsystem building group                                                                                               

Transaction Summary
==========================================================================================================================
Install  154 Packages

Total download size: 57 M
Installed size: 328 M
Downloading Packages:
(1/154): alternatives-1.21-1.fc38.ppc64le.rpm   148 kB/s |  41 kB     00:00    
(2/154): authselect-1.4.2-1.fc38.ppc64le.rpm    491 kB/s | 141 kB     00:00    
(3/154): authselect-libs-1.4.2-1.fc38.ppc64le.r 817 kB/s | 241 kB     00:00    
(4/154): bash-5.2.9-3.fc38.ppc64le.rpm           23 MB/s | 1.9 MB     00:00    
(5/154): binutils-gold-2.39-6.fc38.ppc64le.rpm   15 MB/s | 1.1 MB     00:00    
(6/154): binutils-2.39-6.fc38.ppc64le.rpm        39 MB/s | 6.2 MB     00:00    
(7/154): bzip2-1.0.8-12.fc38.ppc64le.rpm        582 kB/s |  54 kB     00:00    
(8/154): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm   629 kB/s |  48 kB     00:00    
(9/154): cpio-2.13-13.fc38.ppc64le.rpm           18 MB/s | 277 kB     00:00    
(10/154): coreutils-9.1-8.fc38.ppc64le.rpm       34 MB/s | 1.3 MB     00:00    
(11/154): coreutils-common-9.1-8.fc38.ppc64le.r  39 MB/s | 2.0 MB     00:00    
(12/154): cracklib-2.9.7-30.fc38.ppc64le.rpm    2.3 MB/s |  84 kB     00:00    
(13/154): curl-7.87.0-1.fc38.ppc64le.rpm         23 MB/s | 348 kB     00:00    
(14/154): diffutils-3.8-3.fc38.ppc64le.rpm       24 MB/s | 381 kB     00:00    
(15/154): dwz-0.15-1.fc38.ppc64le.rpm           8.5 MB/s | 143 kB     00:00    
(16/154): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.  32 MB/s | 882 kB     00:00    
(17/154): ed-1.18-2.fc38.ppc64le.rpm            7.3 MB/s |  82 kB     00:00    
(18/154): elfutils-0.188-3.fc38.ppc64le.rpm      32 MB/s | 555 kB     00:00    
(19/154): elfutils-debuginfod-client-0.188-3.fc 4.1 MB/s |  42 kB     00:00    
(20/154): elfutils-default-yama-scope-0.188-3.f 1.6 MB/s |  16 kB     00:00    
(21/154): elfutils-libelf-0.188-3.fc38.ppc64le.  16 MB/s | 205 kB     00:00    
(22/154): elfutils-libs-0.188-3.fc38.ppc64le.rp  20 MB/s | 291 kB     00:00    
(23/154): file-5.42-4.fc38.ppc64le.rpm          3.6 MB/s |  50 kB     00:00    
(24/154): file-libs-5.42-4.fc38.ppc64le.rpm      36 MB/s | 688 kB     00:00    
(25/154): findutils-4.9.0-2.fc38.ppc64le.rpm     22 MB/s | 530 kB     00:00    
(26/154): gawk-5.1.1-4.fc38.ppc64le.rpm          32 MB/s | 1.0 MB     00:00    
(27/154): gdbm-libs-1.23-2.fc38.ppc64le.rpm     4.1 MB/s |  62 kB     00:00    
(28/154): gmp-6.2.1-3.fc38.ppc64le.rpm           22 MB/s | 304 kB     00:00    
(29/154): gzip-1.12-2.fc38.ppc64le.rpm           14 MB/s | 163 kB     00:00    
(30/154): grep-3.8-1.fc38.ppc64le.rpm            19 MB/s | 293 kB     00:00    
(31/154): jansson-2.13.1-5.fc38.ppc64le.rpm     4.8 MB/s |  50 kB     00:00    
(32/154): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.4 MB/s |  33 kB     00:00    
(33/154): libacl-2.3.1-4.fc38.ppc64le.rpm       2.6 MB/s |  26 kB     00:00    
(34/154): libarchive-3.6.1-3.fc38.ppc64le.rpm    27 MB/s | 464 kB     00:00    
(35/154): krb5-libs-1.20.1-3.fc38.ppc64le.rpm    29 MB/s | 805 kB     00:00    
(36/154): libattr-2.5.1-5.fc38.ppc64le.rpm      1.1 MB/s |  19 kB     00:00    
(37/154): libbrotli-1.0.9-9.fc38.ppc64le.rpm     22 MB/s | 345 kB     00:00    
(38/154): libcap-2.48-5.fc38.ppc64le.rpm        5.7 MB/s |  73 kB     00:00    
(39/154): libcap-ng-0.8.3-4.fc38.ppc64le.rpm    2.6 MB/s |  34 kB     00:00    
(40/154): libcom_err-1.46.5-3.fc38.ppc64le.rpm  2.8 MB/s |  26 kB     00:00    
(41/154): libcurl-7.87.0-1.fc38.ppc64le.rpm      20 MB/s | 334 kB     00:00    
(42/154): libdb-5.3.28-54.fc38.ppc64le.rpm       36 MB/s | 842 kB     00:00    
(43/154): libeconf-0.4.0-4.fc38.ppc64le.rpm     2.0 MB/s |  31 kB     00:00    
(44/154): libevent-2.1.12-7.fc38.ppc64le.rpm     21 MB/s | 276 kB     00:00    
(45/154): libffi-3.4.4-1.fc38.ppc64le.rpm       3.7 MB/s |  39 kB     00:00    
(46/154): libidn2-2.3.4-1.fc38.ppc64le.rpm       12 MB/s | 157 kB     00:00    
(47/154): libnghttp2-1.51.0-1.fc38.ppc64le.rpm  8.3 MB/s |  85 kB     00:00    
(48/154): libnsl2-2.0.0-4.fc38.ppc64le.rpm      3.4 MB/s |  33 kB     00:00    
(49/154): libpsl-0.21.1-6.fc38.ppc64le.rpm      6.9 MB/s |  67 kB     00:00    
(50/154): librtas-2.0.3-1.fc38.ppc64le.rpm      6.6 MB/s |  68 kB     00:00    
(51/154): libselinux-3.4-6.fc38.ppc64le.rpm     9.3 MB/s | 100 kB     00:00    
(52/154): libsemanage-3.4-6.fc38.ppc64le.rpm     12 MB/s | 131 kB     00:00    
(53/154): libsepol-3.4-4.fc38.ppc64le.rpm        25 MB/s | 355 kB     00:00    
(54/154): libsigsegv-2.14-3.fc38.ppc64le.rpm    2.6 MB/s |  28 kB     00:00    
(55/154): libssh-0.10.4-2.fc38.ppc64le.rpm       15 MB/s | 236 kB     00:00    
(56/154): libssh-config-0.10.4-2.fc38.noarch.rp 995 kB/s | 9.2 kB     00:00    
(57/154): libtasn1-4.19.0-1.fc38.ppc64le.rpm    7.6 MB/s |  81 kB     00:00    
(58/154): libtirpc-1.3.3-0.fc38.ppc64le.rpm     9.6 MB/s | 108 kB     00:00    
(59/154): libutempter-1.2.1-7.fc38.ppc64le.rpm  2.5 MB/s |  27 kB     00:00    
(60/154): libunistring-1.0-2.fc38.ppc64le.rpm    34 MB/s | 575 kB     00:00    
(61/154): libverto-0.3.2-4.fc38.ppc64le.rpm     2.4 MB/s |  23 kB     00:00    
(62/154): libxcrypt-4.4.33-5.fc38.ppc64le.rpm    12 MB/s | 133 kB     00:00    
(63/154): libxml2-2.10.3-2.fc38.ppc64le.rpm      37 MB/s | 780 kB     00:00    
(64/154): lua-libs-5.4.4-6.fc38.ppc64le.rpm     7.7 MB/s | 149 kB     00:00    
(65/154): lz4-libs-1.9.3-5.fc38.ppc64le.rpm     5.4 MB/s |  90 kB     00:00    
(66/154): mpfr-4.1.1-2.fc38.ppc64le.rpm          33 MB/s | 609 kB     00:00    
(67/154): ncurses-base-6.3-5.20221126.fc38.noar 3.6 MB/s |  62 kB     00:00    
(68/154): ncurses-libs-6.3-5.20221126.fc38.ppc6  19 MB/s | 374 kB     00:00    
(69/154): openldap-2.6.3-1.fc38.ppc64le.rpm      17 MB/s | 288 kB     00:00    
(70/154): nettle-3.8-2.fc38.ppc64le.rpm          23 MB/s | 443 kB     00:00    
(71/154): openssl-libs-3.0.5-6.fc38.ppc64le.rpm  50 MB/s | 2.2 MB     00:00    
(72/154): p11-kit-0.24.1-5.fc38.ppc64le.rpm      11 MB/s | 359 kB     00:00    
(73/154): p11-kit-trust-0.24.1-5.fc38.ppc64le.r 4.8 MB/s | 150 kB     00:00    
(74/154): pam-libs-1.5.2-15.fc38.ppc64le.rpm    6.3 MB/s |  64 kB     00:00    
(75/154): patch-2.7.6-17.fc38.ppc64le.rpm        12 MB/s | 136 kB     00:00    
(76/154): pam-1.5.2-15.fc38.ppc64le.rpm          31 MB/s | 569 kB     00:00    
(77/154): pcre2-10.40-1.fc38.1.ppc64le.rpm       19 MB/s | 242 kB     00:00    
(78/154): pcre2-syntax-10.40-1.fc38.1.noarch.rp  12 MB/s | 143 kB     00:00    
(79/154): libgcc-13.0.0-0.4.fc38.ppc64le.rpm    289 kB/s |  88 kB     00:00    
(80/154): libgomp-13.0.0-0.4.fc38.ppc64le.rpm   935 kB/s | 314 kB     00:00    
(81/154): ansible-srpm-macros-1-8.1.fc38.noarch 140 kB/s | 8.6 kB     00:00    
(82/154): libstdc++-13.0.0-0.4.fc38.ppc64le.rpm 2.4 MB/s | 932 kB     00:00    
(83/154): basesystem-11-14.fc37.noarch.rpm      365 kB/s | 7.0 kB     00:00    
(84/154): crypto-policies-20221215-1.gita4c31a3 1.4 MB/s |  90 kB     00:00    
(85/154): audit-libs-3.0.9-2.fc38.ppc64le.rpm   1.0 MB/s | 130 kB     00:00    
(86/154): ca-certificates-2022.2.54-5.fc37.noar 6.9 MB/s | 829 kB     00:00    
(87/154): debugedit-5.0-5.fc37.ppc64le.rpm      1.4 MB/s |  80 kB     00:00    
(88/154): fedora-release-38-0.6.noarch.rpm      698 kB/s |  11 kB     00:00    
(89/154): fedora-gpg-keys-38-0.3.noarch.rpm     5.8 MB/s | 125 kB     00:00    
(90/154): efi-srpm-macros-5-6.fc37.noarch.rpm   384 kB/s |  22 kB     00:00    
(91/154): fedora-release-common-38-0.6.noarch.r 1.3 MB/s |  21 kB     00:00    
(92/154): fedora-release-identity-basic-38-0.6. 611 kB/s |  11 kB     00:00    
(93/154): fedora-repos-38-0.3.noarch.rpm        542 kB/s |  10 kB     00:00    
(94/154): fedora-repos-rawhide-38-0.3.noarch.rp 628 kB/s | 9.7 kB     00:00    
(95/154): fonts-srpm-macros-2.0.5-10.fc38.noarc 774 kB/s |  26 kB     00:00    
(96/154): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 212 kB/s | 7.7 kB     00:00    
(97/154): filesystem-3.18-2.fc37.ppc64le.rpm     20 MB/s | 1.1 MB     00:00    
(98/154): glibc-2.36.9000-19.fc38.ppc64le.rpm    32 MB/s | 2.2 MB     00:00    
(99/154): ghc-srpm-macros-1.5.0-7.fc37.noarch.r  93 kB/s | 7.8 kB     00:00    
(100/154): glibc-common-2.36.9000-19.fc38.ppc64 8.2 MB/s | 322 kB     00:00    
(101/154): glibc-minimal-langpack-2.36.9000-19. 1.3 MB/s |  30 kB     00:00    
(102/154): gdb-minimal-12.1-10.fc38.ppc64le.rpm  21 MB/s | 3.7 MB     00:00    
(103/154): gnat-srpm-macros-4-16.fc37.noarch.rp 263 kB/s | 8.3 kB     00:00    
(104/154): go-srpm-macros-3.2.0-1.fc38.noarch.r 651 kB/s |  27 kB     00:00    
(105/154): glibc-gconv-extra-2.36.9000-19.fc38.  14 MB/s | 1.9 MB     00:00    
(106/154): info-7.0.1-1.fc38.ppc64le.rpm        3.7 MB/s | 199 kB     00:00    
(107/154): libblkid-2.38.1-3.fc38.ppc64le.rpm   4.0 MB/s | 122 kB     00:00    
(108/154): libfdisk-2.38.1-3.fc38.ppc64le.rpm   3.2 MB/s | 176 kB     00:00    
(109/154): kernel-srpm-macros-1.0-15.fc37.noarc 117 kB/s | 9.4 kB     00:00    
(110/154): libmount-2.38.1-3.fc38.ppc64le.rpm   3.8 MB/s | 154 kB     00:00    
(111/154): libsmartcols-2.38.1-3.fc38.ppc64le.r 2.6 MB/s |  70 kB     00:00    
(112/154): libpkgconf-1.8.0-3.fc37.ppc64le.rpm  850 kB/s |  40 kB     00:00    
(113/154): libuuid-2.38.1-3.fc38.ppc64le.rpm    1.7 MB/s |  29 kB     00:00    
(114/154): libpwquality-1.4.5-1.fc38.ppc64le.rp 2.1 MB/s | 122 kB     00:00    
(115/154): libzstd-1.5.2-3.fc37.ppc64le.rpm     6.1 MB/s | 316 kB     00:00    
(116/154): lua-srpm-macros-1-7.fc37.noarch.rpm  207 kB/s | 8.8 kB     00:00    
(117/154): nim-srpm-macros-3-7.fc37.noarch.rpm  122 kB/s | 8.4 kB     00:00    
(118/154): ocaml-srpm-macros-7-2.fc37.noarch.rp 220 kB/s |  13 kB     00:00    
(119/154): openblas-srpm-macros-2-12.fc37.noarc 115 kB/s | 7.5 kB     00:00    
(120/154): package-notes-srpm-macros-0.5-6.fc38 173 kB/s |  11 kB     00:00    
(121/154): perl-srpm-macros-1-47.fc38.noarch.rp 151 kB/s | 8.2 kB     00:00    
(122/154): pkgconf-1.8.0-3.fc37.ppc64le.rpm     666 kB/s |  43 kB     00:00    
(123/154): pkgconf-m4-1.8.0-3.fc37.noarch.rpm   427 kB/s |  14 kB     00:00    
(124/154): pkgconf-pkg-config-1.8.0-3.fc37.ppc6 509 kB/s |  10 kB     00:00    
(125/154): publicsuffix-list-dafsa-20221208-1.f 2.9 MB/s |  59 kB     00:00    
(126/154): popt-1.19-1.fc38.ppc64le.rpm         2.2 MB/s |  71 kB     00:00    
(127/154): python-srpm-macros-3.11-6.fc38.noarc 662 kB/s |  25 kB     00:00    
(128/154): readline-8.2-2.fc38.ppc64le.rpm      7.4 MB/s | 228 kB     00:00    
(129/154): qt5-srpm-macros-5.15.7-1.fc38.noarch 194 kB/s | 7.9 kB     00:00    
(130/154): redhat-rpm-config-235-1.fc38.noarch. 1.7 MB/s |  80 kB     00:00    
(131/154): rpm-4.18.0-8.fc38.ppc64le.rpm         11 MB/s | 568 kB     00:00    
(132/154): rpm-build-4.18.0-8.fc38.ppc64le.rpm  1.5 MB/s |  78 kB     00:00    
(133/154): rpm-build-libs-4.18.0-8.fc38.ppc64le 3.1 MB/s | 103 kB     00:00    
(134/154): rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm  16 MB/s | 1.4 MB     00:00    
(135/154): rpm-libs-4.18.0-8.fc38.ppc64le.rpm   3.7 MB/s | 355 kB     00:00    
(136/154): rpmautospec-rpm-macros-0.3.1-1.fc38. 102 kB/s | 8.8 kB     00:00    
(137/154): setup-2.14.3-1.fc38.noarch.rpm       8.5 MB/s | 152 kB     00:00    
(138/154): rust-srpm-macros-23-1.fc38.noarch.rp 299 kB/s | 9.4 kB     00:00    
(139/154): sed-4.8-11.fc37.ppc64le.rpm          8.6 MB/s | 313 kB     00:00    
(140/154): sqlite-libs-3.40.0-1.fc38.ppc64le.rp  14 MB/s | 776 kB     00:00    
(141/154): shadow-utils-4.13-3.fc38.ppc64le.rpm  16 MB/s | 1.3 MB     00:00    
(142/154): systemd-libs-252.4-598.fc38.ppc64le. 9.7 MB/s | 666 kB     00:00    
(143/154): tzdata-2022g-1.fc38.noarch.rpm        24 MB/s | 716 kB     00:00    
(144/154): unzip-6.0-58.fc38.ppc64le.rpm        2.8 MB/s | 188 kB     00:00    
(145/154): tar-1.34-5.fc38.ppc64le.rpm          9.3 MB/s | 914 kB     00:00    
(146/154): util-linux-2.38.1-3.fc38.ppc64le.rpm  24 MB/s | 2.4 MB     00:00    
(147/154): util-linux-core-2.38.1-3.fc38.ppc64l 7.4 MB/s | 515 kB     00:00    
(148/154): which-2.21-36.fc38.ppc64le.rpm       564 kB/s |  42 kB     00:00    
(149/154): xz-libs-5.2.9-1.fc38.ppc64le.rpm     3.7 MB/s | 104 kB     00:00    
(150/154): xxhash-libs-0.8.1-3.fc37.ppc64le.rpm 687 kB/s |  38 kB     00:00    
(151/154): xz-5.2.9-1.fc38.ppc64le.rpm          4.3 MB/s | 310 kB     00:00    
(152/154): zip-3.0-35.fc38.ppc64le.rpm          6.7 MB/s | 267 kB     00:00    
(153/154): zlib-1.2.13-1.fc38.ppc64le.rpm       2.9 MB/s | 100 kB     00:00    
(154/154): zstd-1.5.2-3.fc37.ppc64le.rpm        7.2 MB/s | 466 kB     00:00    
--------------------------------------------------------------------------------
Total                                            20 MB/s |  57 MB     00:02     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.ppc64le                         1/1 
  Preparing        :                                                        1/1 
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  Installing       : fedora-release-identity-basic-38-0.6.noarch          3/154 
  Installing       : tzdata-2022g-1.fc38.noarch                           4/154 
  Installing       : rust-srpm-macros-23-1.fc38.noarch                    5/154 
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  Installing       : pkgconf-m4-1.8.0-3.fc37.noarch                       8/154 
  Installing       : perl-srpm-macros-1-47.fc38.noarch                    9/154 
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  Installing       : nim-srpm-macros-3-7.fc37.noarch                     13/154 
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  Installing       : gnat-srpm-macros-4-16.fc37.noarch                   15/154 
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  Installing       : fpc-srpm-macros-1.3-6.fc37.noarch                   17/154 
  Installing       : fedora-gpg-keys-38-0.3.noarch                       18/154 
  Installing       : fedora-release-38-0.6.noarch                        19/154 
  Installing       : fedora-release-common-38-0.6.noarch                 20/154 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  21/154 
  Installing       : fedora-repos-38-0.3.noarch                          22/154 
  Installing       : setup-2.14.3-1.fc38.noarch                          23/154 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.3-1.fc38.noarch                          23/154 
  Installing       : filesystem-3.18-2.fc37.ppc64le                      24/154 
  Installing       : basesystem-11-14.fc37.noarch                        25/154 
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  Installing       : ncurses-base-6.3-5.20221126.fc38.noarch             28/154 
  Installing       : ncurses-libs-6.3-5.20221126.fc38.ppc64le            29/154 
  Installing       : glibc-gconv-extra-2.36.9000-19.fc38.ppc64le         30/154 
  Running scriptlet: glibc-gconv-extra-2.36.9000-19.fc38.ppc64le         30/154 
  Running scriptlet: glibc-2.36.9000-19.fc38.ppc64le                     31/154 
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  Installing       : bash-5.2.9-3.fc38.ppc64le                           32/154 
  Running scriptlet: bash-5.2.9-3.fc38.ppc64le                           32/154 
  Installing       : glibc-common-2.36.9000-19.fc38.ppc64le              33/154 
  Installing       : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le    34/154 
  Installing       : zlib-1.2.13-1.fc38.ppc64le                          35/154 
  Installing       : xz-libs-5.2.9-1.fc38.ppc64le                        36/154 
  Installing       : bzip2-libs-1.0.8-12.fc38.ppc64le                    37/154 
  Installing       : elfutils-libelf-0.188-3.fc38.ppc64le                38/154 
  Installing       : gmp-1:6.2.1-3.fc38.ppc64le                          39/154 
  Installing       : libstdc++-13.0.0-0.4.fc38.ppc64le                   40/154 
  Installing       : libuuid-2.38.1-3.fc38.ppc64le                       41/154 
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  Installing       : popt-1.19-1.fc38.ppc64le                            43/154 
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  Installing       : libattr-2.5.1-5.fc38.ppc64le                        45/154 
  Installing       : libacl-2.3.1-4.fc38.ppc64le                         46/154 
  Installing       : libcap-2.48-5.fc38.ppc64le                          47/154 
  Installing       : libxcrypt-4.4.33-5.fc38.ppc64le                     48/154 
  Installing       : readline-8.2-2.fc38.ppc64le                         49/154 
  Installing       : lz4-libs-1.9.3-5.fc38.ppc64le                       50/154 
  Installing       : systemd-libs-252.4-598.fc38.ppc64le                 51/154 
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  Installing       : dwz-0.15-1.fc38.ppc64le                             53/154 
  Installing       : unzip-6.0-58.fc38.ppc64le                           54/154 
  Installing       : file-libs-5.42-4.fc38.ppc64le                       55/154 
  Installing       : file-5.42-4.fc38.ppc64le                            56/154 
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  Installing       : alternatives-1.21-1.fc38.ppc64le                    58/154 
  Installing       : libcap-ng-0.8.3-4.fc38.ppc64le                      59/154 
  Installing       : audit-libs-3.0.9-2.fc38.ppc64le                     60/154 
  Installing       : libcom_err-1.46.5-3.fc38.ppc64le                    61/154 
  Installing       : libeconf-0.4.0-4.fc38.ppc64le                       62/154 
  Installing       : pam-libs-1.5.2-15.fc38.ppc64le                      63/154 
  Installing       : libsepol-3.4-4.fc38.ppc64le                         64/154 
  Installing       : libunistring-1.0-2.fc38.ppc64le                     65/154 
  Installing       : libidn2-2.3.4-1.fc38.ppc64le                        66/154 
  Installing       : lua-libs-5.4.4-6.fc38.ppc64le                       67/154 
  Installing       : pcre2-10.40-1.fc38.1.ppc64le                        68/154 
  Installing       : libselinux-3.4-6.fc38.ppc64le                       69/154 
  Installing       : sed-4.8-11.fc37.ppc64le                             70/154 
  Installing       : grep-3.8-1.fc38.ppc64le                             71/154 
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  Installing       : xz-5.2.9-1.fc38.ppc64le                             73/154 
  Installing       : libmount-2.38.1-3.fc38.ppc64le                      74/154 
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  Installing       : util-linux-core-2.38.1-3.fc38.ppc64le               76/154 
  Installing       : libsemanage-3.4-6.fc38.ppc64le                      77/154 
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  Running scriptlet: libutempter-1.2.1-7.fc38.ppc64le                    79/154 
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  Installing       : tar-2:1.34-5.fc38.ppc64le                           80/154 
  Installing       : libpsl-0.21.1-6.fc38.ppc64le                        81/154 
  Installing       : zip-3.0-35.fc38.ppc64le                             82/154 
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  Installing       : libfdisk-2.38.1-3.fc38.ppc64le                      84/154 
  Installing       : nettle-3.8-2.fc38.ppc64le                           85/154 
  Installing       : rpm-sequoia-1.2.0-1.fc38.ppc64le                    86/154 
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  Installing       : ed-1.18-2.fc38.ppc64le                              90/154 
  Installing       : patch-2.7.6-17.fc38.ppc64le                         91/154 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     92/154 
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  Installing       : cpio-2.13-13.fc38.ppc64le                           93/154 
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  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le                96/154 
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  Installing       : libnghttp2-1.51.0-1.fc38.ppc64le                   103/154 
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  Installing       : libsigsegv-2.14-3.fc38.ppc64le                     105/154 
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  Installing       : libtasn1-4.19.0-1.fc38.ppc64le                     107/154 
  Installing       : p11-kit-trust-0.24.1-5.fc38.ppc64le                108/154 
  Running scriptlet: p11-kit-trust-0.24.1-5.fc38.ppc64le                108/154 
  Installing       : libverto-0.3.2-4.fc38.ppc64le                      109/154 
  Installing       : libgomp-13.0.0-0.4.fc38.ppc64le                    110/154 
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  Installing       : libssh-config-0.10.4-2.fc38.noarch                 115/154 
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  Running scriptlet: filesystem-3.18-2.fc37.ppc64le                     154/154 
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  Verifying        : alternatives-1.21-1.fc38.ppc64le                     1/154 
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  Verifying        : cpio-2.13-13.fc38.ppc64le                           11/154 
  Verifying        : cracklib-2.9.7-30.fc38.ppc64le                      12/154 
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  Verifying        : grep-3.8-1.fc38.ppc64le                             29/154 
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  Verifying        : jansson-2.13.1-5.fc38.ppc64le                       31/154 
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  Verifying        : nettle-3.8-2.fc38.ppc64le                           69/154 
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  Verifying        : audit-libs-3.0.9-2.fc38.ppc64le                     83/154 
  Verifying        : basesystem-11-14.fc37.noarch                        84/154 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             85/154 
  Verifying        : crypto-policies-20221215-1.gita4c31a3.fc38.noarc    86/154 
  Verifying        : debugedit-5.0-5.fc37.ppc64le                        87/154 
  Verifying        : efi-srpm-macros-5-6.fc37.noarch                     88/154 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       89/154 
  Verifying        : fedora-release-38-0.6.noarch                        90/154 
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  Verifying        : fedora-repos-38-0.3.noarch                          93/154 
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  Verifying        : filesystem-3.18-2.fc37.ppc64le                      95/154 
  Verifying        : fonts-srpm-macros-1:2.0.5-10.fc38.noarch            96/154 
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  Verifying        : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le   103/154 
  Verifying        : gnat-srpm-macros-4-16.fc37.noarch                  104/154 
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  Verifying        : info-7.0.1-1.fc38.ppc64le                          106/154 
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  Verifying        : libblkid-2.38.1-3.fc38.ppc64le                     108/154 
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  Verifying        : libpkgconf-1.8.0-3.fc37.ppc64le                    111/154 
  Verifying        : libpwquality-1.4.5-1.fc38.ppc64le                  112/154 
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  Verifying        : popt-1.19-1.fc38.ppc64le                           125/154 
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  Verifying        : qt5-srpm-macros-5.15.7-1.fc38.noarch               128/154 
  Verifying        : readline-8.2-2.fc38.ppc64le                        129/154 
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  Verifying        : rpm-4.18.0-8.fc38.ppc64le                          131/154 
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  Verifying        : rust-srpm-macros-23-1.fc38.noarch                  137/154 
  Verifying        : sed-4.8-11.fc37.ppc64le                            138/154 
  Verifying        : setup-2.14.3-1.fc38.noarch                         139/154 
  Verifying        : shadow-utils-2:4.13-3.fc38.ppc64le                 140/154 
  Verifying        : sqlite-libs-3.40.0-1.fc38.ppc64le                  141/154 
  Verifying        : systemd-libs-252.4-598.fc38.ppc64le                142/154 
  Verifying        : tar-2:1.34-5.fc38.ppc64le                          143/154 
  Verifying        : tzdata-2022g-1.fc38.noarch                         144/154 
  Verifying        : unzip-6.0-58.fc38.ppc64le                          145/154 
  Verifying        : util-linux-2.38.1-3.fc38.ppc64le                   146/154 
  Verifying        : util-linux-core-2.38.1-3.fc38.ppc64le              147/154 
  Verifying        : which-2.21-36.fc38.ppc64le                         148/154 
  Verifying        : xxhash-libs-0.8.1-3.fc37.ppc64le                   149/154 
  Verifying        : xz-5.2.9-1.fc38.ppc64le                            150/154 
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  Verifying        : zip-3.0-35.fc38.ppc64le                            152/154 
  Verifying        : zlib-1.2.13-1.fc38.ppc64le                         153/154 
  Verifying        : zstd-1.5.2-3.fc37.ppc64le                          154/154 

Installed:
  alternatives-1.21-1.fc38.ppc64le                                              
  ansible-srpm-macros-1-8.1.fc38.noarch                                         
  audit-libs-3.0.9-2.fc38.ppc64le                                               
  authselect-1.4.2-1.fc38.ppc64le                                               
  authselect-libs-1.4.2-1.fc38.ppc64le                                          
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.9-3.fc38.ppc64le                                                     
  binutils-2.39-6.fc38.ppc64le                                                  
  binutils-gold-2.39-6.fc38.ppc64le                                             
  bzip2-1.0.8-12.fc38.ppc64le                                                   
  bzip2-libs-1.0.8-12.fc38.ppc64le                                              
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.ppc64le                                                  
  coreutils-common-9.1-8.fc38.ppc64le                                           
  cpio-2.13-13.fc38.ppc64le                                                     
  cracklib-2.9.7-30.fc38.ppc64le                                                
  crypto-policies-20221215-1.gita4c31a3.fc38.noarch                             
  curl-7.87.0-1.fc38.ppc64le                                                    
  cyrus-sasl-lib-2.1.28-8.fc38.ppc64le                                          
  debugedit-5.0-5.fc37.ppc64le                                                  
  diffutils-3.8-3.fc38.ppc64le                                                  
  dwz-0.15-1.fc38.ppc64le                                                       
  ed-1.18-2.fc38.ppc64le                                                        
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.188-3.fc38.ppc64le                                                 
  elfutils-debuginfod-client-0.188-3.fc38.ppc64le                               
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.ppc64le                                          
  elfutils-libs-0.188-3.fc38.ppc64le                                            
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.6.noarch                                                  
  fedora-release-common-38-0.6.noarch                                           
  fedora-release-identity-basic-38-0.6.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-4.fc38.ppc64le                                                      
  file-libs-5.42-4.fc38.ppc64le                                                 
  filesystem-3.18-2.fc37.ppc64le                                                
  findutils-1:4.9.0-2.fc38.ppc64le                                              
  fonts-srpm-macros-1:2.0.5-10.fc38.noarch                                      
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc38.ppc64le                                                     
  gdb-minimal-12.1-10.fc38.ppc64le                                              
  gdbm-libs-1:1.23-2.fc38.ppc64le                                               
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-19.fc38.ppc64le                                               
  glibc-common-2.36.9000-19.fc38.ppc64le                                        
  glibc-gconv-extra-2.36.9000-19.fc38.ppc64le                                   
  glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le                              
  gmp-1:6.2.1-3.fc38.ppc64le                                                    
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.2.0-1.fc38.noarch                                            
  grep-3.8-1.fc38.ppc64le                                                       
  gzip-1.12-2.fc38.ppc64le                                                      
  info-7.0.1-1.fc38.ppc64le                                                     
  jansson-2.13.1-5.fc38.ppc64le                                                 
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc38.ppc64le                                            
  krb5-libs-1.20.1-3.fc38.ppc64le                                               
  libacl-2.3.1-4.fc38.ppc64le                                                   
  libarchive-3.6.1-3.fc38.ppc64le                                               
  libattr-2.5.1-5.fc38.ppc64le                                                  
  libblkid-2.38.1-3.fc38.ppc64le                                                
  libbrotli-1.0.9-9.fc38.ppc64le                                                
  libcap-2.48-5.fc38.ppc64le                                                    
  libcap-ng-0.8.3-4.fc38.ppc64le                                                
  libcom_err-1.46.5-3.fc38.ppc64le                                              
  libcurl-7.87.0-1.fc38.ppc64le                                                 
  libdb-5.3.28-54.fc38.ppc64le                                                  
  libeconf-0.4.0-4.fc38.ppc64le                                                 
  libevent-2.1.12-7.fc38.ppc64le                                                
  libfdisk-2.38.1-3.fc38.ppc64le                                                
  libffi-3.4.4-1.fc38.ppc64le                                                   
  libgcc-13.0.0-0.4.fc38.ppc64le                                                
  libgomp-13.0.0-0.4.fc38.ppc64le                                               
  libidn2-2.3.4-1.fc38.ppc64le                                                  
  libmount-2.38.1-3.fc38.ppc64le                                                
  libnghttp2-1.51.0-1.fc38.ppc64le                                              
  libnsl2-2.0.0-4.fc38.ppc64le                                                  
  libpkgconf-1.8.0-3.fc37.ppc64le                                               
  libpsl-0.21.1-6.fc38.ppc64le                                                  
  libpwquality-1.4.5-1.fc38.ppc64le                                             
  librtas-2.0.3-1.fc38.ppc64le                                                  
  libselinux-3.4-6.fc38.ppc64le                                                 
  libsemanage-3.4-6.fc38.ppc64le                                                
  libsepol-3.4-4.fc38.ppc64le                                                   
  libsigsegv-2.14-3.fc38.ppc64le                                                
  libsmartcols-2.38.1-3.fc38.ppc64le                                            
  libssh-0.10.4-2.fc38.ppc64le                                                  
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.0-0.4.fc38.ppc64le                                             
  libtasn1-4.19.0-1.fc38.ppc64le                                                
  libtirpc-1.3.3-0.fc38.ppc64le                                                 
  libunistring-1.0-2.fc38.ppc64le                                               
  libutempter-1.2.1-7.fc38.ppc64le                                              
  libuuid-2.38.1-3.fc38.ppc64le                                                 
  libverto-0.3.2-4.fc38.ppc64le                                                 
  libxcrypt-4.4.33-5.fc38.ppc64le                                               
  libxml2-2.10.3-2.fc38.ppc64le                                                 
  libzstd-1.5.2-3.fc37.ppc64le                                                  
  lua-libs-5.4.4-6.fc38.ppc64le                                                 
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc38.ppc64le                                                 
  mpfr-4.1.1-2.fc38.ppc64le                                                     
  ncurses-base-6.3-5.20221126.fc38.noarch                                       
  ncurses-libs-6.3-5.20221126.fc38.ppc64le                                      
  nettle-3.8-2.fc38.ppc64le                                                     
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.ppc64le                                                 
  openssl-libs-1:3.0.5-6.fc38.ppc64le                                           
  p11-kit-0.24.1-5.fc38.ppc64le                                                 
  p11-kit-trust-0.24.1-5.fc38.ppc64le                                           
  package-notes-srpm-macros-0.5-6.fc38.noarch                                   
  pam-1.5.2-15.fc38.ppc64le                                                     
  pam-libs-1.5.2-15.fc38.ppc64le                                                
  patch-2.7.6-17.fc38.ppc64le                                                   
  pcre2-10.40-1.fc38.1.ppc64le                                                  
  pcre2-syntax-10.40-1.fc38.1.noarch                                            
  perl-srpm-macros-1-47.fc38.noarch                                             
  pkgconf-1.8.0-3.fc37.ppc64le                                                  
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.ppc64le                                       
  popt-1.19-1.fc38.ppc64le                                                      
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-srpm-macros-3.11-6.fc38.noarch                                         
  qt5-srpm-macros-5.15.7-1.fc38.noarch                                          
  readline-8.2-2.fc38.ppc64le                                                   
  redhat-rpm-config-235-1.fc38.noarch                                           
  rpm-4.18.0-8.fc38.ppc64le                                                     
  rpm-build-4.18.0-8.fc38.ppc64le                                               
  rpm-build-libs-4.18.0-8.fc38.ppc64le                                          
  rpm-libs-4.18.0-8.fc38.ppc64le                                                
  rpm-sequoia-1.2.0-1.fc38.ppc64le                                              
  rpmautospec-rpm-macros-0.3.1-1.fc38.noarch                                    
  rust-srpm-macros-23-1.fc38.noarch                                             
  sed-4.8-11.fc37.ppc64le                                                       
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.ppc64le                                            
  sqlite-libs-3.40.0-1.fc38.ppc64le                                             
  systemd-libs-252.4-598.fc38.ppc64le                                           
  tar-2:1.34-5.fc38.ppc64le                                                     
  tzdata-2022g-1.fc38.noarch                                                    
  unzip-6.0-58.fc38.ppc64le                                                     
  util-linux-2.38.1-3.fc38.ppc64le                                              
  util-linux-core-2.38.1-3.fc38.ppc64le                                         
  which-2.21-36.fc38.ppc64le                                                    
  xxhash-libs-0.8.1-3.fc37.ppc64le                                              
  xz-5.2.9-1.fc38.ppc64le                                                       
  xz-libs-5.2.9-1.fc38.ppc64le                                                  
  zip-3.0-35.fc38.ppc64le                                                       
  zlib-1.2.13-1.fc38.ppc64le                                                    
  zstd-1.5.2-3.fc37.ppc64le                                                     

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libeconf-0.4.0-4.fc38.ppc64le
glibc-2.36.9000-19.fc38.ppc64le
file-libs-5.42-4.fc38.ppc64le
diffutils-3.8-3.fc38.ppc64le
sqlite-libs-3.40.0-1.fc38.ppc64le
keyutils-libs-1.6.1-5.fc38.ppc64le
rpm-build-libs-4.18.0-8.fc38.ppc64le
libattr-2.5.1-5.fc38.ppc64le
rpm-libs-4.18.0-8.fc38.ppc64le
tar-1.34-5.fc38.ppc64le
debugedit-5.0-5.fc37.ppc64le
glibc-gconv-extra-2.36.9000-19.fc38.ppc64le
libpsl-0.21.1-6.fc38.ppc64le
bzip2-libs-1.0.8-12.fc38.ppc64le
rpm-4.18.0-8.fc38.ppc64le
pcre2-syntax-10.40-1.fc38.1.noarch
gpg-pubkey-5323552a-6112bcdc
fedora-release-38-0.6.noarch
libevent-2.1.12-7.fc38.ppc64le
libarchive-3.6.1-3.fc38.ppc64le
sed-4.8-11.fc37.ppc64le
rust-srpm-macros-23-1.fc38.noarch
libxcrypt-4.4.33-5.fc38.ppc64le
libsemanage-3.4-6.fc38.ppc64le
p11-kit-0.24.1-5.fc38.ppc64le
libdb-5.3.28-54.fc38.ppc64le
efi-srpm-macros-5-6.fc37.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
libgomp-13.0.0-0.4.fc38.ppc64le
info-7.0.1-1.fc38.ppc64le
findutils-4.9.0-2.fc38.ppc64le
tzdata-2022g-1.fc38.noarch
python-srpm-macros-3.11-6.fc38.noarch
libtasn1-4.19.0-1.fc38.ppc64le
openblas-srpm-macros-2-12.fc37.noarch
gmp-6.2.1-3.fc38.ppc64le
pkgconf-pkg-config-1.8.0-3.fc37.ppc64le
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
libxml2-2.10.3-2.fc38.ppc64le
libcurl-7.87.0-1.fc38.ppc64le
audit-libs-3.0.9-2.fc38.ppc64le
libselinux-3.4-6.fc38.ppc64le
shadow-utils-4.13-3.fc38.ppc64le
elfutils-debuginfod-client-0.188-3.fc38.ppc64le
gnat-srpm-macros-4-16.fc37.noarch
cyrus-sasl-lib-2.1.28-8.fc38.ppc64le
pam-1.5.2-15.fc38.ppc64le
rpm-sequoia-1.2.0-1.fc38.ppc64le
libnghttp2-1.51.0-1.fc38.ppc64le
ansible-srpm-macros-1-8.1.fc38.noarch
libverto-0.3.2-4.fc38.ppc64le
popt-1.19-1.fc38.ppc64le
authselect-libs-1.4.2-1.fc38.ppc64le
xz-libs-5.2.9-1.fc38.ppc64le
fedora-gpg-keys-38-0.3.noarch
libfdisk-2.38.1-3.fc38.ppc64le
nettle-3.8-2.fc38.ppc64le
libsmartcols-2.38.1-3.fc38.ppc64le
gzip-1.12-2.fc38.ppc64le
file-5.42-4.fc38.ppc64le
lua-libs-5.4.4-6.fc38.ppc64le
glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le
patch-2.7.6-17.fc38.ppc64le
pkgconf-m4-1.8.0-3.fc37.noarch
lz4-libs-1.9.3-5.fc38.ppc64le
pcre2-10.40-1.fc38.1.ppc64le
openssl-libs-3.0.5-6.fc38.ppc64le
elfutils-libs-0.188-3.fc38.ppc64le
gdb-minimal-12.1-10.fc38.ppc64le
glibc-common-2.36.9000-19.fc38.ppc64le
ghc-srpm-macros-1.5.0-7.fc37.noarch
util-linux-core-2.38.1-3.fc38.ppc64le
lua-srpm-macros-1-7.fc37.noarch
dwz-0.15-1.fc38.ppc64le
rpm-build-4.18.0-8.fc38.ppc64le
zip-3.0-35.fc38.ppc64le
p11-kit-trust-0.24.1-5.fc38.ppc64le
libssh-config-0.10.4-2.fc38.noarch
gdbm-libs-1.23-2.fc38.ppc64le
coreutils-common-9.1-8.fc38.ppc64le
systemd-libs-252.4-598.fc38.ppc64le
coreutils-9.1-8.fc38.ppc64le
which-2.21-36.fc38.ppc64le
jansson-2.13.1-5.fc38.ppc64le
ncurses-libs-6.3-5.20221126.fc38.ppc64le
libcap-ng-0.8.3-4.fc38.ppc64le
libpkgconf-1.8.0-3.fc37.ppc64le
nim-srpm-macros-3-7.fc37.noarch
libmount-2.38.1-3.fc38.ppc64le
binutils-gold-2.39-6.fc38.ppc64le
kernel-srpm-macros-1.0-15.fc37.noarch
libnsl2-2.0.0-4.fc38.ppc64le
redhat-rpm-config-235-1.fc38.noarch
librtas-2.0.3-1.fc38.ppc64le
cpio-2.13-13.fc38.ppc64le
elfutils-libelf-0.188-3.fc38.ppc64le
libacl-2.3.1-4.fc38.ppc64le
libtirpc-1.3.3-0.fc38.ppc64le
unzip-6.0-58.fc38.ppc64le
libssh-0.10.4-2.fc38.ppc64le
fonts-srpm-macros-2.0.5-10.fc38.noarch
perl-srpm-macros-1-47.fc38.noarch
pam-libs-1.5.2-15.fc38.ppc64le
krb5-libs-1.20.1-3.fc38.ppc64le
libutempter-1.2.1-7.fc38.ppc64le
libuuid-2.38.1-3.fc38.ppc64le
libstdc++-13.0.0-0.4.fc38.ppc64le
crypto-policies-20221215-1.gita4c31a3.fc38.noarch
libidn2-2.3.4-1.fc38.ppc64le
grep-3.8-1.fc38.ppc64le
libunistring-1.0-2.fc38.ppc64le
package-notes-srpm-macros-0.5-6.fc38.noarch
ncurses-base-6.3-5.20221126.fc38.noarch
pkgconf-1.8.0-3.fc37.ppc64le
libbrotli-1.0.9-9.fc38.ppc64le
libffi-3.4.4-1.fc38.ppc64le
fedora-repos-38-0.3.noarch
publicsuffix-list-dafsa-20221208-1.fc38.noarch
ed-1.18-2.fc38.ppc64le
fedora-release-identity-basic-38-0.6.noarch
ca-certificates-2022.2.54-5.fc37.noarch
fedora-repos-rawhide-38-0.3.noarch
cracklib-2.9.7-30.fc38.ppc64le
util-linux-2.38.1-3.fc38.ppc64le
elfutils-0.188-3.fc38.ppc64le
libcom_err-1.46.5-3.fc38.ppc64le
fedora-release-common-38-0.6.noarch
alternatives-1.21-1.fc38.ppc64le
libsigsegv-2.14-3.fc38.ppc64le
bash-5.2.9-3.fc38.ppc64le
authselect-1.4.2-1.fc38.ppc64le
elfutils-default-yama-scope-0.188-3.fc38.noarch
xz-5.2.9-1.fc38.ppc64le
bzip2-1.0.8-12.fc38.ppc64le
ocaml-srpm-macros-7-2.fc37.noarch
filesystem-3.18-2.fc37.ppc64le
libgcc-13.0.0-0.4.fc38.ppc64le
zlib-1.2.13-1.fc38.ppc64le
openldap-2.6.3-1.fc38.ppc64le
gawk-5.1.1-4.fc38.ppc64le
readline-8.2-2.fc38.ppc64le
xxhash-libs-0.8.1-3.fc37.ppc64le
libpwquality-1.4.5-1.fc38.ppc64le
libblkid-2.38.1-3.fc38.ppc64le
fpc-srpm-macros-1.3-6.fc37.noarch
mpfr-4.1.1-2.fc38.ppc64le
zstd-1.5.2-3.fc37.ppc64le
setup-2.14.3-1.fc38.noarch
basesystem-11-14.fc37.noarch
curl-7.87.0-1.fc38.ppc64le
gpg-pubkey-eb10b464-6202d9c6
libcap-2.48-5.fc38.ppc64le
binutils-2.39-6.fc38.ppc64le
libsepol-3.4-4.fc38.ppc64le
libzstd-1.5.2-3.fc37.ppc64le
qt5-srpm-macros-5.15.7-1.fc38.noarch
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1658448000
Wrote: /builddir/build/SRPMS/percolator-3.05-10.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-yqovix85/percolator/percolator.spec) Config(child) 2 minutes 15 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/percolator-3.05-10.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672042909.556246 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/percolator-3.05-10.fc38.src.rpm)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672042909.556246/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672042909.556246/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 9.5 kB/s | 3.0 kB     00:00    
Copr repository                                  24 MB/s |  30 MB     00:01    
Additional repo https_jakub_fedorapeople_org_fe 8.8 kB/s | 3.0 kB     00:00    
fedora                                           61 kB/s | 5.6 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for percolator-3.05-10.fc38.src.rpm
Start: build setup for percolator-3.05-10.fc38.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1658448000
Wrote: /builddir/build/SRPMS/percolator-3.05-10.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  11 kB/s | 3.0 kB     00:00    
Copr repository                                  29 MB/s |  30 MB     00:01    
Additional repo https_jakub_fedorapeople_org_fe 9.0 kB/s | 3.0 kB     00:00    
fedora                                           64 kB/s | 5.6 kB     00:00    
Dependencies resolved.
===============================================================================================================
 Package                     Arch     Version             Repository                                       Size
===============================================================================================================
Installing:
 boost-devel                 ppc64le  1.78.0-9.fc38       copr_base                                        11 M
 boost-static                ppc64le  1.78.0-9.fc38       copr_base                                       3.9 M
 bzip2-devel                 ppc64le  1.0.8-12.fc38       copr_base                                       214 k
 cmake                       ppc64le  3.25.1-1.fc38       copr_base                                       6.8 M
 gcc                         ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   30 M
 gcc-c++                     ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   12 M
 libtirpc-devel              ppc64le  1.3.3-0.fc38        copr_base                                       113 k
 make                        ppc64le  1:4.3-11.fc38       copr_base                                       549 k
 sqlite-devel                ppc64le  3.40.0-1.fc38       fedora                                          143 k
 tokyocabinet-devel          ppc64le  1.4.48-20.fc37      fedora                                           93 k
 xerces-c-devel              ppc64le  3.2.3-7.fc37        fedora                                          509 k
 xsd                         ppc64le  4.1.0-0.10.a11.fc37 fedora                                          1.2 M
 zlib-devel                  ppc64le  1.2.13-1.fc38       fedora                                           45 k
Installing dependencies:
 annobin-docs                noarch   10.99-1.0.1.fc38    https_jakub_fedorapeople_org_fedora_gcc13_arch   93 k
 annobin-plugin-gcc          ppc64le  10.99-1.0.1.fc38    https_jakub_fedorapeople_org_fedora_gcc13_arch  890 k
 boost                       ppc64le  1.78.0-9.fc38       copr_base                                        15 k
 boost-atomic                ppc64le  1.78.0-9.fc38       copr_base                                        20 k
 boost-chrono                ppc64le  1.78.0-9.fc38       copr_base                                        28 k
 boost-container             ppc64le  1.78.0-9.fc38       copr_base                                        43 k
 boost-context               ppc64le  1.78.0-9.fc38       copr_base                                        18 k
 boost-contract              ppc64le  1.78.0-9.fc38       copr_base                                        48 k
 boost-coroutine             ppc64le  1.78.0-9.fc38       copr_base                                        24 k
 boost-date-time             ppc64le  1.78.0-9.fc38       copr_base                                        17 k
 boost-fiber                 ppc64le  1.78.0-9.fc38       copr_base                                        45 k
 boost-filesystem            ppc64le  1.78.0-9.fc38       copr_base                                        68 k
 boost-graph                 ppc64le  1.78.0-9.fc38       copr_base                                       160 k
 boost-iostreams             ppc64le  1.78.0-9.fc38       copr_base                                        42 k
 boost-json                  ppc64le  1.78.0-9.fc38       copr_base                                       117 k
 boost-locale                ppc64le  1.78.0-9.fc38       copr_base                                       245 k
 boost-log                   ppc64le  1.78.0-9.fc38       copr_base                                       524 k
 boost-math                  ppc64le  1.78.0-9.fc38       copr_base                                       295 k
 boost-nowide                ppc64le  1.78.0-9.fc38       copr_base                                        22 k
 boost-numpy3                ppc64le  1.78.0-9.fc38       copr_base                                        30 k
 boost-program-options       ppc64le  1.78.0-9.fc38       copr_base                                       117 k
 boost-python3               ppc64le  1.78.0-9.fc38       copr_base                                       119 k
 boost-random                ppc64le  1.78.0-9.fc38       copr_base                                        27 k
 boost-regex                 ppc64le  1.78.0-9.fc38       copr_base                                       122 k
 boost-serialization         ppc64le  1.78.0-9.fc38       copr_base                                       139 k
 boost-stacktrace            ppc64le  1.78.0-9.fc38       copr_base                                        32 k
 boost-system                ppc64le  1.78.0-9.fc38       copr_base                                        17 k
 boost-test                  ppc64le  1.78.0-9.fc38       copr_base                                       251 k
 boost-thread                ppc64le  1.78.0-9.fc38       copr_base                                        63 k
 boost-timer                 ppc64le  1.78.0-9.fc38       copr_base                                        46 k
 boost-type_erasure          ppc64le  1.78.0-9.fc38       copr_base                                        35 k
 boost-wave                  ppc64le  1.78.0-9.fc38       copr_base                                       239 k
 cmake-data                  noarch   3.25.1-1.fc38       copr_base                                       1.7 M
 cmake-filesystem            ppc64le  3.25.1-1.fc38       copr_base                                        17 k
 cmake-rpm-macros            noarch   3.25.1-1.fc38       copr_base                                        16 k
 cpp                         ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  9.8 M
 emacs-filesystem            noarch   1:28.1-3.fc37       fedora                                          9.5 k
 expat                       ppc64le  2.5.0-1.fc38        copr_base                                       117 k
 flexiblas                   ppc64le  3.2.1-3.fc38        fedora                                           32 k
 flexiblas-netlib            ppc64le  3.2.1-3.fc38        fedora                                          2.7 M
 flexiblas-openblas-openmp   ppc64le  3.2.1-3.fc38        fedora                                           16 k
 gc                          ppc64le  8.2.2-1.fc38        copr_base                                       122 k
 gcc-plugin-annobin          ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   32 k
 glibc-devel                 ppc64le  2.36.9000-19.fc38   fedora                                          546 k
 guile22                     ppc64le  2.2.7-6.fc38        copr_base                                       6.5 M
 jsoncpp                     ppc64le  1.9.5-3.fc38        copr_base                                       101 k
 kernel-headers              ppc64le  6.1.0-1.fc38        fedora                                          1.5 M
 libasan                     ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  477 k
 libatomic                   ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch   19 k
 libb2                       ppc64le  0.98.1-7.fc38       copr_base                                        26 k
 libcutl                     ppc64le  1.10.0-25.fc38      copr_base                                       330 k
 libgfortran                 ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  597 k
 libicu                      ppc64le  71.1-2.fc38         copr_base                                        10 M
 libicu-devel                ppc64le  71.1-2.fc38         copr_base                                       844 k
 libmpc                      ppc64le  1.2.1-5.fc38        copr_base                                        85 k
 libquadmath                 ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  195 k
 libstdc++-devel             ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  2.4 M
 libtool-ltdl                ppc64le  2.4.7-3.0.1.fc38    https_jakub_fedorapeople_org_fedora_gcc13_arch   41 k
 libubsan                    ppc64le  13.0.0-0.4.fc38     https_jakub_fedorapeople_org_fedora_gcc13_arch  234 k
 libuv                       ppc64le  1:1.44.2-2.fc38     copr_base                                       162 k
 libxcrypt-devel             ppc64le  4.4.33-5.fc38       copr_base                                        31 k
 mpdecimal                   ppc64le  2.5.1-4.fc38        copr_base                                       118 k
 openblas                    ppc64le  0.3.21-4.fc38       fedora                                           35 k
 openblas-openmp             ppc64le  0.3.21-4.fc38       fedora                                          4.4 M
 python-pip-wheel            noarch   22.3.1-1.fc38       fedora                                          1.4 M
 python-setuptools-wheel     noarch   65.5.1-1.fc38       fedora                                          715 k
 python3                     ppc64le  3.11.1-1.fc38       fedora                                           27 k
 python3-libs                ppc64le  3.11.1-1.fc38       fedora                                          9.7 M
 python3-numpy               ppc64le  1:1.23.5-1.fc38     copr_base                                       7.3 M
 rhash                       ppc64le  1.4.3-1.fc38        fedora                                          205 k
 sqlite                      ppc64le  3.40.0-1.fc38       fedora                                          940 k
 tokyocabinet                ppc64le  1.4.48-20.fc37      fedora                                          574 k
 vim-filesystem              noarch   2:9.0.1054-1.fc38   fedora                                           19 k
 xerces-c                    ppc64le  3.2.3-7.fc37        fedora                                          957 k

Transaction Summary
===============================================================================================================
Install  87 Packages

Total download size: 136 M
Installed size: 676 M
Downloading Packages:
(1/87): boost-1.78.0-9.fc38.ppc64le.rpm         112 kB/s |  15 kB     00:00    
(2/87): boost-atomic-1.78.0-9.fc38.ppc64le.rpm  151 kB/s |  20 kB     00:00    
(3/87): boost-chrono-1.78.0-9.fc38.ppc64le.rpm  196 kB/s |  28 kB     00:00    
(4/87): boost-container-1.78.0-9.fc38.ppc64le.r 3.2 MB/s |  43 kB     00:00    
(5/87): boost-context-1.78.0-9.fc38.ppc64le.rpm 1.0 MB/s |  18 kB     00:00    
(6/87): boost-contract-1.78.0-9.fc38.ppc64le.rp 4.0 MB/s |  48 kB     00:00    
(7/87): boost-coroutine-1.78.0-9.fc38.ppc64le.r 1.7 MB/s |  24 kB     00:00    
(8/87): boost-date-time-1.78.0-9.fc38.ppc64le.r 1.6 MB/s |  17 kB     00:00    
(9/87): boost-fiber-1.78.0-9.fc38.ppc64le.rpm   1.3 MB/s |  45 kB     00:00    
(10/87): boost-filesystem-1.78.0-9.fc38.ppc64le 2.1 MB/s |  68 kB     00:00    
(11/87): boost-graph-1.78.0-9.fc38.ppc64le.rpm  2.6 MB/s | 160 kB     00:00    
(12/87): boost-iostreams-1.78.0-9.fc38.ppc64le. 665 kB/s |  42 kB     00:00    
(13/87): boost-devel-1.78.0-9.fc38.ppc64le.rpm   63 MB/s |  11 MB     00:00    
(14/87): boost-json-1.78.0-9.fc38.ppc64le.rpm   1.4 MB/s | 117 kB     00:00    
(15/87): boost-locale-1.78.0-9.fc38.ppc64le.rpm 3.0 MB/s | 245 kB     00:00    
(16/87): boost-log-1.78.0-9.fc38.ppc64le.rpm     32 MB/s | 524 kB     00:00    
(17/87): boost-math-1.78.0-9.fc38.ppc64le.rpm    18 MB/s | 295 kB     00:00    
(18/87): boost-nowide-1.78.0-9.fc38.ppc64le.rpm 1.3 MB/s |  22 kB     00:00    
(19/87): boost-numpy3-1.78.0-9.fc38.ppc64le.rpm 3.2 MB/s |  30 kB     00:00    
(20/87): boost-program-options-1.78.0-9.fc38.pp  11 MB/s | 117 kB     00:00    
(21/87): boost-python3-1.78.0-9.fc38.ppc64le.rp  10 MB/s | 119 kB     00:00    
(22/87): boost-random-1.78.0-9.fc38.ppc64le.rpm 3.0 MB/s |  27 kB     00:00    
(23/87): boost-regex-1.78.0-9.fc38.ppc64le.rpm   12 MB/s | 122 kB     00:00    
(24/87): boost-serialization-1.78.0-9.fc38.ppc6  12 MB/s | 139 kB     00:00    
(25/87): boost-stacktrace-1.78.0-9.fc38.ppc64le 3.4 MB/s |  32 kB     00:00    
(26/87): boost-system-1.78.0-9.fc38.ppc64le.rpm 1.8 MB/s |  17 kB     00:00    
(27/87): boost-test-1.78.0-9.fc38.ppc64le.rpm    17 MB/s | 251 kB     00:00    
(28/87): boost-thread-1.78.0-9.fc38.ppc64le.rpm 4.6 MB/s |  63 kB     00:00    
(29/87): boost-timer-1.78.0-9.fc38.ppc64le.rpm  2.2 MB/s |  46 kB     00:00    
(30/87): boost-type_erasure-1.78.0-9.fc38.ppc64 1.5 MB/s |  35 kB     00:00    
(31/87): boost-static-1.78.0-9.fc38.ppc64le.rpm  54 MB/s | 3.9 MB     00:00    
(32/87): boost-wave-1.78.0-9.fc38.ppc64le.rpm   6.6 MB/s | 239 kB     00:00    
(33/87): bzip2-devel-1.0.8-12.fc38.ppc64le.rpm  7.6 MB/s | 214 kB     00:00    
(34/87): cmake-filesystem-3.25.1-1.fc38.ppc64le 826 kB/s |  17 kB     00:00    
(35/87): cmake-data-3.25.1-1.fc38.noarch.rpm     34 MB/s | 1.7 MB     00:00    
(36/87): cmake-3.25.1-1.fc38.ppc64le.rpm         58 MB/s | 6.8 MB     00:00    
(37/87): cmake-rpm-macros-3.25.1-1.fc38.noarch. 174 kB/s |  16 kB     00:00    
(38/87): expat-2.5.0-1.fc38.ppc64le.rpm         1.7 MB/s | 117 kB     00:00    
(39/87): gc-8.2.2-1.fc38.ppc64le.rpm             11 MB/s | 122 kB     00:00    
(40/87): jsoncpp-1.9.5-3.fc38.ppc64le.rpm       6.5 MB/s | 101 kB     00:00    
(41/87): libb2-0.98.1-7.fc38.ppc64le.rpm        667 kB/s |  26 kB     00:00    
(42/87): guile22-2.2.7-6.fc38.ppc64le.rpm        67 MB/s | 6.5 MB     00:00    
(43/87): libicu-71.1-2.fc38.ppc64le.rpm          57 MB/s |  10 MB     00:00    
(44/87): libcutl-1.10.0-25.fc38.ppc64le.rpm     1.5 MB/s | 330 kB     00:00    
(45/87): libicu-devel-71.1-2.fc38.ppc64le.rpm   5.7 MB/s | 844 kB     00:00    
(46/87): libmpc-1.2.1-5.fc38.ppc64le.rpm        7.2 MB/s |  85 kB     00:00    
(47/87): libuv-1.44.2-2.fc38.ppc64le.rpm         14 MB/s | 162 kB     00:00    
(48/87): libtirpc-devel-1.3.3-0.fc38.ppc64le.rp 8.8 MB/s | 113 kB     00:00    
(49/87): libxcrypt-devel-4.4.33-5.fc38.ppc64le. 3.3 MB/s |  31 kB     00:00    
(50/87): make-4.3-11.fc38.ppc64le.rpm            31 MB/s | 549 kB     00:00    
(51/87): mpdecimal-2.5.1-4.fc38.ppc64le.rpm     6.1 MB/s | 118 kB     00:00    
(52/87): python3-numpy-1.23.5-1.fc38.ppc64le.rp  60 MB/s | 7.3 MB     00:00    
(53/87): annobin-docs-10.99-1.0.1.fc38.noarch.r 496 kB/s |  93 kB     00:00    
(54/87): annobin-plugin-gcc-10.99-1.0.1.fc38.pp 3.0 MB/s | 890 kB     00:00    
(55/87): gcc-c++-13.0.0-0.4.fc38.ppc64le.rpm     36 MB/s |  12 MB     00:00    
(56/87): gcc-plugin-annobin-13.0.0-0.4.fc38.ppc 723 kB/s |  32 kB     00:00    
(57/87): cpp-13.0.0-0.4.fc38.ppc64le.rpm         15 MB/s | 9.8 MB     00:00    
(58/87): libasan-13.0.0-0.4.fc38.ppc64le.rpm    5.5 MB/s | 477 kB     00:00    
(59/87): libgfortran-13.0.0-0.4.fc38.ppc64le.rp  20 MB/s | 597 kB     00:00    
(60/87): libatomic-13.0.0-0.4.fc38.ppc64le.rpm  575 kB/s |  19 kB     00:00    
(61/87): libquadmath-13.0.0-0.4.fc38.ppc64le.rp 5.9 MB/s | 195 kB     00:00    
(62/87): libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le. 1.4 MB/s |  41 kB     00:00    
(63/87): libstdc++-devel-13.0.0-0.4.fc38.ppc64l  30 MB/s | 2.4 MB     00:00    
(64/87): libubsan-13.0.0-0.4.fc38.ppc64le.rpm   4.6 MB/s | 234 kB     00:00    
(65/87): gcc-13.0.0-0.4.fc38.ppc64le.rpm         36 MB/s |  30 MB     00:00    
(66/87): emacs-filesystem-28.1-3.fc37.noarch.rp  33 kB/s | 9.5 kB     00:00    
(67/87): flexiblas-3.2.1-3.fc38.ppc64le.rpm     121 kB/s |  32 kB     00:00    
(68/87): flexiblas-openblas-openmp-3.2.1-3.fc38 351 kB/s |  16 kB     00:00    
(69/87): glibc-devel-2.36.9000-19.fc38.ppc64le. 2.0 MB/s | 546 kB     00:00    
(70/87): flexiblas-netlib-3.2.1-3.fc38.ppc64le. 5.9 MB/s | 2.7 MB     00:00    
(71/87): kernel-headers-6.1.0-1.fc38.ppc64le.rp 5.3 MB/s | 1.5 MB     00:00    
(72/87): openblas-0.3.21-4.fc38.ppc64le.rpm     574 kB/s |  35 kB     00:00    
(73/87): openblas-openmp-0.3.21-4.fc38.ppc64le.  34 MB/s | 4.4 MB     00:00    
(74/87): python-pip-wheel-22.3.1-1.fc38.noarch. 9.7 MB/s | 1.4 MB     00:00    
(75/87): python-setuptools-wheel-65.5.1-1.fc38. 4.1 MB/s | 715 kB     00:00    
(76/87): python3-3.11.1-1.fc38.ppc64le.rpm      525 kB/s |  27 kB     00:00    
(77/87): rhash-1.4.3-1.fc38.ppc64le.rpm         1.3 MB/s | 205 kB     00:00    
(78/87): python3-libs-3.11.1-1.fc38.ppc64le.rpm  41 MB/s | 9.7 MB     00:00    
(79/87): sqlite-3.40.0-1.fc38.ppc64le.rpm       4.4 MB/s | 940 kB     00:00    
(80/87): sqlite-devel-3.40.0-1.fc38.ppc64le.rpm 2.1 MB/s | 143 kB     00:00    
(81/87): tokyocabinet-1.4.48-20.fc37.ppc64le.rp 6.1 MB/s | 574 kB     00:00    
(82/87): tokyocabinet-devel-1.4.48-20.fc37.ppc6 1.0 MB/s |  93 kB     00:00    
(83/87): vim-filesystem-9.0.1054-1.fc38.noarch. 188 kB/s |  19 kB     00:00    
(84/87): xerces-c-3.2.3-7.fc37.ppc64le.rpm       16 MB/s | 957 kB     00:00    
(85/87): xerces-c-devel-3.2.3-7.fc37.ppc64le.rp 6.1 MB/s | 509 kB     00:00    
(86/87): xsd-4.1.0-0.10.a11.fc37.ppc64le.rpm    8.9 MB/s | 1.2 MB     00:00    
(87/87): zlib-devel-1.2.13-1.fc38.ppc64le.rpm   502 kB/s |  45 kB     00:00    
--------------------------------------------------------------------------------
Total                                            42 MB/s | 136 MB     00:03     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : boost-system-1.78.0-9.fc38.ppc64le                    1/87 
  Installing       : boost-chrono-1.78.0-9.fc38.ppc64le                    2/87 
  Installing       : boost-thread-1.78.0-9.fc38.ppc64le                    3/87 
  Installing       : libicu-71.1-2.fc38.ppc64le                            4/87 
  Installing       : boost-regex-1.78.0-9.fc38.ppc64le                     5/87 
  Installing       : libmpc-1.2.1-5.fc38.ppc64le                           6/87 
  Installing       : expat-2.5.0-1.fc38.ppc64le                            7/87 
  Installing       : boost-context-1.78.0-9.fc38.ppc64le                   8/87 
  Installing       : boost-atomic-1.78.0-9.fc38.ppc64le                    9/87 
  Installing       : boost-filesystem-1.78.0-9.fc38.ppc64le               10/87 
  Installing       : xerces-c-3.2.3-7.fc37.ppc64le                        11/87 
  Installing       : flexiblas-3.2.1-3.fc38.ppc64le                       12/87 
  Installing       : libquadmath-13.0.0-0.4.fc38.ppc64le                  13/87 
  Installing       : libgfortran-13.0.0-0.4.fc38.ppc64le                  14/87 
  Installing       : cmake-filesystem-3.25.1-1.fc38.ppc64le               15/87 
  Installing       : boost-date-time-1.78.0-9.fc38.ppc64le                16/87 
  Installing       : boost-container-1.78.0-9.fc38.ppc64le                17/87 
  Installing       : boost-json-1.78.0-9.fc38.ppc64le                     18/87 
  Installing       : boost-wave-1.78.0-9.fc38.ppc64le                     19/87 
  Installing       : boost-fiber-1.78.0-9.fc38.ppc64le                    20/87 
  Installing       : boost-log-1.78.0-9.fc38.ppc64le                      21/87 
  Installing       : boost-coroutine-1.78.0-9.fc38.ppc64le                22/87 
  Installing       : libcutl-1.10.0-25.fc38.ppc64le                       23/87 
  Installing       : cpp-13.0.0-0.4.fc38.ppc64le                          24/87 
  Installing       : boost-graph-1.78.0-9.fc38.ppc64le                    25/87 
  Installing       : boost-locale-1.78.0-9.fc38.ppc64le                   26/87 
  Installing       : libicu-devel-71.1-2.fc38.ppc64le                     27/87 
  Installing       : boost-type_erasure-1.78.0-9.fc38.ppc64le             28/87 
  Installing       : boost-timer-1.78.0-9.fc38.ppc64le                    29/87 
  Installing       : vim-filesystem-2:9.0.1054-1.fc38.noarch              30/87 
  Installing       : tokyocabinet-1.4.48-20.fc37.ppc64le                  31/87 
  Installing       : sqlite-3.40.0-1.fc38.ppc64le                         32/87 
  Installing       : rhash-1.4.3-1.fc38.ppc64le                           33/87 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch         34/87 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch                35/87 
  Installing       : openblas-0.3.21-4.fc38.ppc64le                       36/87 
  Installing       : openblas-openmp-0.3.21-4.fc38.ppc64le                37/87 
  Installing       : flexiblas-netlib-3.2.1-3.fc38.ppc64le                38/87 
  Installing       : flexiblas-openblas-openmp-3.2.1-3.fc38.ppc64le       39/87 
  Installing       : kernel-headers-6.1.0-1.fc38.ppc64le                  40/87 
  Installing       : glibc-devel-2.36.9000-19.fc38.ppc64le                41/87 
  Installing       : libxcrypt-devel-4.4.33-5.fc38.ppc64le                42/87 
  Installing       : emacs-filesystem-1:28.1-3.fc37.noarch                43/87 
  Installing       : libubsan-13.0.0-0.4.fc38.ppc64le                     44/87 
  Installing       : libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le                45/87 
  Installing       : libstdc++-devel-13.0.0-0.4.fc38.ppc64le              46/87 
  Installing       : libatomic-13.0.0-0.4.fc38.ppc64le                    47/87 
  Installing       : libasan-13.0.0-0.4.fc38.ppc64le                      48/87 
  Installing       : annobin-docs-10.99-1.0.1.fc38.noarch                 49/87 
  Installing       : mpdecimal-2.5.1-4.fc38.ppc64le                       50/87 
  Installing       : libuv-1:1.44.2-2.fc38.ppc64le                        51/87 
  Installing       : libb2-0.98.1-7.fc38.ppc64le                          52/87 
  Installing       : python3-3.11.1-1.fc38.ppc64le                        53/87 
  Installing       : python3-libs-3.11.1-1.fc38.ppc64le                   54/87 
  Installing       : boost-python3-1.78.0-9.fc38.ppc64le                  55/87 
  Installing       : cmake-rpm-macros-3.25.1-1.fc38.noarch                56/87 
  Installing       : python3-numpy-1:1.23.5-1.fc38.ppc64le                57/87 
  Installing       : boost-numpy3-1.78.0-9.fc38.ppc64le                   58/87 
  Installing       : jsoncpp-1.9.5-3.fc38.ppc64le                         59/87 
  Installing       : gc-8.2.2-1.fc38.ppc64le                              60/87 
  Installing       : guile22-2.2.7-6.fc38.ppc64le                         61/87 
  Installing       : make-1:4.3-11.fc38.ppc64le                           62/87 
  Installing       : gcc-13.0.0-0.4.fc38.ppc64le                          63/87 
  Running scriptlet: gcc-13.0.0-0.4.fc38.ppc64le                          63/87 
  Installing       : cmake-data-3.25.1-1.fc38.noarch                      64/87 
  Installing       : cmake-3.25.1-1.fc38.ppc64le                          65/87 
  Installing       : boost-test-1.78.0-9.fc38.ppc64le                     66/87 
  Installing       : boost-stacktrace-1.78.0-9.fc38.ppc64le               67/87 
  Installing       : boost-serialization-1.78.0-9.fc38.ppc64le            68/87 
  Installing       : boost-random-1.78.0-9.fc38.ppc64le                   69/87 
  Installing       : boost-program-options-1.78.0-9.fc38.ppc64le          70/87 
  Installing       : boost-nowide-1.78.0-9.fc38.ppc64le                   71/87 
  Installing       : boost-math-1.78.0-9.fc38.ppc64le                     72/87 
  Installing       : boost-iostreams-1.78.0-9.fc38.ppc64le                73/87 
  Installing       : boost-contract-1.78.0-9.fc38.ppc64le                 74/87 
  Installing       : boost-1.78.0-9.fc38.ppc64le                          75/87 
  Installing       : boost-devel-1.78.0-9.fc38.ppc64le                    76/87 
  Installing       : boost-static-1.78.0-9.fc38.ppc64le                   77/87 
  Installing       : annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le          78/87 
  Running scriptlet: annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le          78/87 
  Installing       : gcc-c++-13.0.0-0.4.fc38.ppc64le                      79/87 
  Installing       : gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le           80/87 
  Installing       : sqlite-devel-3.40.0-1.fc38.ppc64le                   81/87 
  Installing       : tokyocabinet-devel-1.4.48-20.fc37.ppc64le            82/87 
  Installing       : xsd-4.1.0-0.10.a11.fc37.ppc64le                      83/87 
  Installing       : xerces-c-devel-3.2.3-7.fc37.ppc64le                  84/87 
  Installing       : zlib-devel-1.2.13-1.fc38.ppc64le                     85/87 
  Installing       : libtirpc-devel-1.3.3-0.fc38.ppc64le                  86/87 
  Installing       : bzip2-devel-1.0.8-12.fc38.ppc64le                    87/87 
  Running scriptlet: bzip2-devel-1.0.8-12.fc38.ppc64le                    87/87 
  Verifying        : boost-1.78.0-9.fc38.ppc64le                           1/87 
  Verifying        : boost-atomic-1.78.0-9.fc38.ppc64le                    2/87 
  Verifying        : boost-chrono-1.78.0-9.fc38.ppc64le                    3/87 
  Verifying        : boost-container-1.78.0-9.fc38.ppc64le                 4/87 
  Verifying        : boost-context-1.78.0-9.fc38.ppc64le                   5/87 
  Verifying        : boost-contract-1.78.0-9.fc38.ppc64le                  6/87 
  Verifying        : boost-coroutine-1.78.0-9.fc38.ppc64le                 7/87 
  Verifying        : boost-date-time-1.78.0-9.fc38.ppc64le                 8/87 
  Verifying        : boost-devel-1.78.0-9.fc38.ppc64le                     9/87 
  Verifying        : boost-fiber-1.78.0-9.fc38.ppc64le                    10/87 
  Verifying        : boost-filesystem-1.78.0-9.fc38.ppc64le               11/87 
  Verifying        : boost-graph-1.78.0-9.fc38.ppc64le                    12/87 
  Verifying        : boost-iostreams-1.78.0-9.fc38.ppc64le                13/87 
  Verifying        : boost-json-1.78.0-9.fc38.ppc64le                     14/87 
  Verifying        : boost-locale-1.78.0-9.fc38.ppc64le                   15/87 
  Verifying        : boost-log-1.78.0-9.fc38.ppc64le                      16/87 
  Verifying        : boost-math-1.78.0-9.fc38.ppc64le                     17/87 
  Verifying        : boost-nowide-1.78.0-9.fc38.ppc64le                   18/87 
  Verifying        : boost-numpy3-1.78.0-9.fc38.ppc64le                   19/87 
  Verifying        : boost-program-options-1.78.0-9.fc38.ppc64le          20/87 
  Verifying        : boost-python3-1.78.0-9.fc38.ppc64le                  21/87 
  Verifying        : boost-random-1.78.0-9.fc38.ppc64le                   22/87 
  Verifying        : boost-regex-1.78.0-9.fc38.ppc64le                    23/87 
  Verifying        : boost-serialization-1.78.0-9.fc38.ppc64le            24/87 
  Verifying        : boost-stacktrace-1.78.0-9.fc38.ppc64le               25/87 
  Verifying        : boost-static-1.78.0-9.fc38.ppc64le                   26/87 
  Verifying        : boost-system-1.78.0-9.fc38.ppc64le                   27/87 
  Verifying        : boost-test-1.78.0-9.fc38.ppc64le                     28/87 
  Verifying        : boost-thread-1.78.0-9.fc38.ppc64le                   29/87 
  Verifying        : boost-timer-1.78.0-9.fc38.ppc64le                    30/87 
  Verifying        : boost-type_erasure-1.78.0-9.fc38.ppc64le             31/87 
  Verifying        : boost-wave-1.78.0-9.fc38.ppc64le                     32/87 
  Verifying        : bzip2-devel-1.0.8-12.fc38.ppc64le                    33/87 
  Verifying        : cmake-3.25.1-1.fc38.ppc64le                          34/87 
  Verifying        : cmake-data-3.25.1-1.fc38.noarch                      35/87 
  Verifying        : cmake-filesystem-3.25.1-1.fc38.ppc64le               36/87 
  Verifying        : cmake-rpm-macros-3.25.1-1.fc38.noarch                37/87 
  Verifying        : expat-2.5.0-1.fc38.ppc64le                           38/87 
  Verifying        : gc-8.2.2-1.fc38.ppc64le                              39/87 
  Verifying        : guile22-2.2.7-6.fc38.ppc64le                         40/87 
  Verifying        : jsoncpp-1.9.5-3.fc38.ppc64le                         41/87 
  Verifying        : libb2-0.98.1-7.fc38.ppc64le                          42/87 
  Verifying        : libcutl-1.10.0-25.fc38.ppc64le                       43/87 
  Verifying        : libicu-71.1-2.fc38.ppc64le                           44/87 
  Verifying        : libicu-devel-71.1-2.fc38.ppc64le                     45/87 
  Verifying        : libmpc-1.2.1-5.fc38.ppc64le                          46/87 
  Verifying        : libtirpc-devel-1.3.3-0.fc38.ppc64le                  47/87 
  Verifying        : libuv-1:1.44.2-2.fc38.ppc64le                        48/87 
  Verifying        : libxcrypt-devel-4.4.33-5.fc38.ppc64le                49/87 
  Verifying        : make-1:4.3-11.fc38.ppc64le                           50/87 
  Verifying        : mpdecimal-2.5.1-4.fc38.ppc64le                       51/87 
  Verifying        : python3-numpy-1:1.23.5-1.fc38.ppc64le                52/87 
  Verifying        : annobin-docs-10.99-1.0.1.fc38.noarch                 53/87 
  Verifying        : annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le          54/87 
  Verifying        : cpp-13.0.0-0.4.fc38.ppc64le                          55/87 
  Verifying        : gcc-13.0.0-0.4.fc38.ppc64le                          56/87 
  Verifying        : gcc-c++-13.0.0-0.4.fc38.ppc64le                      57/87 
  Verifying        : gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le           58/87 
  Verifying        : libasan-13.0.0-0.4.fc38.ppc64le                      59/87 
  Verifying        : libatomic-13.0.0-0.4.fc38.ppc64le                    60/87 
  Verifying        : libgfortran-13.0.0-0.4.fc38.ppc64le                  61/87 
  Verifying        : libquadmath-13.0.0-0.4.fc38.ppc64le                  62/87 
  Verifying        : libstdc++-devel-13.0.0-0.4.fc38.ppc64le              63/87 
  Verifying        : libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le                64/87 
  Verifying        : libubsan-13.0.0-0.4.fc38.ppc64le                     65/87 
  Verifying        : emacs-filesystem-1:28.1-3.fc37.noarch                66/87 
  Verifying        : flexiblas-3.2.1-3.fc38.ppc64le                       67/87 
  Verifying        : flexiblas-netlib-3.2.1-3.fc38.ppc64le                68/87 
  Verifying        : flexiblas-openblas-openmp-3.2.1-3.fc38.ppc64le       69/87 
  Verifying        : glibc-devel-2.36.9000-19.fc38.ppc64le                70/87 
  Verifying        : kernel-headers-6.1.0-1.fc38.ppc64le                  71/87 
  Verifying        : openblas-0.3.21-4.fc38.ppc64le                       72/87 
  Verifying        : openblas-openmp-0.3.21-4.fc38.ppc64le                73/87 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch                74/87 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch         75/87 
  Verifying        : python3-3.11.1-1.fc38.ppc64le                        76/87 
  Verifying        : python3-libs-3.11.1-1.fc38.ppc64le                   77/87 
  Verifying        : rhash-1.4.3-1.fc38.ppc64le                           78/87 
  Verifying        : sqlite-3.40.0-1.fc38.ppc64le                         79/87 
  Verifying        : sqlite-devel-3.40.0-1.fc38.ppc64le                   80/87 
  Verifying        : tokyocabinet-1.4.48-20.fc37.ppc64le                  81/87 
  Verifying        : tokyocabinet-devel-1.4.48-20.fc37.ppc64le            82/87 
  Verifying        : vim-filesystem-2:9.0.1054-1.fc38.noarch              83/87 
  Verifying        : xerces-c-3.2.3-7.fc37.ppc64le                        84/87 
  Verifying        : xerces-c-devel-3.2.3-7.fc37.ppc64le                  85/87 
  Verifying        : xsd-4.1.0-0.10.a11.fc37.ppc64le                      86/87 
  Verifying        : zlib-devel-1.2.13-1.fc38.ppc64le                     87/87 

Installed:
  annobin-docs-10.99-1.0.1.fc38.noarch                                          
  annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le                                   
  boost-1.78.0-9.fc38.ppc64le                                                   
  boost-atomic-1.78.0-9.fc38.ppc64le                                            
  boost-chrono-1.78.0-9.fc38.ppc64le                                            
  boost-container-1.78.0-9.fc38.ppc64le                                         
  boost-context-1.78.0-9.fc38.ppc64le                                           
  boost-contract-1.78.0-9.fc38.ppc64le                                          
  boost-coroutine-1.78.0-9.fc38.ppc64le                                         
  boost-date-time-1.78.0-9.fc38.ppc64le                                         
  boost-devel-1.78.0-9.fc38.ppc64le                                             
  boost-fiber-1.78.0-9.fc38.ppc64le                                             
  boost-filesystem-1.78.0-9.fc38.ppc64le                                        
  boost-graph-1.78.0-9.fc38.ppc64le                                             
  boost-iostreams-1.78.0-9.fc38.ppc64le                                         
  boost-json-1.78.0-9.fc38.ppc64le                                              
  boost-locale-1.78.0-9.fc38.ppc64le                                            
  boost-log-1.78.0-9.fc38.ppc64le                                               
  boost-math-1.78.0-9.fc38.ppc64le                                              
  boost-nowide-1.78.0-9.fc38.ppc64le                                            
  boost-numpy3-1.78.0-9.fc38.ppc64le                                            
  boost-program-options-1.78.0-9.fc38.ppc64le                                   
  boost-python3-1.78.0-9.fc38.ppc64le                                           
  boost-random-1.78.0-9.fc38.ppc64le                                            
  boost-regex-1.78.0-9.fc38.ppc64le                                             
  boost-serialization-1.78.0-9.fc38.ppc64le                                     
  boost-stacktrace-1.78.0-9.fc38.ppc64le                                        
  boost-static-1.78.0-9.fc38.ppc64le                                            
  boost-system-1.78.0-9.fc38.ppc64le                                            
  boost-test-1.78.0-9.fc38.ppc64le                                              
  boost-thread-1.78.0-9.fc38.ppc64le                                            
  boost-timer-1.78.0-9.fc38.ppc64le                                             
  boost-type_erasure-1.78.0-9.fc38.ppc64le                                      
  boost-wave-1.78.0-9.fc38.ppc64le                                              
  bzip2-devel-1.0.8-12.fc38.ppc64le                                             
  cmake-3.25.1-1.fc38.ppc64le                                                   
  cmake-data-3.25.1-1.fc38.noarch                                               
  cmake-filesystem-3.25.1-1.fc38.ppc64le                                        
  cmake-rpm-macros-3.25.1-1.fc38.noarch                                         
  cpp-13.0.0-0.4.fc38.ppc64le                                                   
  emacs-filesystem-1:28.1-3.fc37.noarch                                         
  expat-2.5.0-1.fc38.ppc64le                                                    
  flexiblas-3.2.1-3.fc38.ppc64le                                                
  flexiblas-netlib-3.2.1-3.fc38.ppc64le                                         
  flexiblas-openblas-openmp-3.2.1-3.fc38.ppc64le                                
  gc-8.2.2-1.fc38.ppc64le                                                       
  gcc-13.0.0-0.4.fc38.ppc64le                                                   
  gcc-c++-13.0.0-0.4.fc38.ppc64le                                               
  gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le                                    
  glibc-devel-2.36.9000-19.fc38.ppc64le                                         
  guile22-2.2.7-6.fc38.ppc64le                                                  
  jsoncpp-1.9.5-3.fc38.ppc64le                                                  
  kernel-headers-6.1.0-1.fc38.ppc64le                                           
  libasan-13.0.0-0.4.fc38.ppc64le                                               
  libatomic-13.0.0-0.4.fc38.ppc64le                                             
  libb2-0.98.1-7.fc38.ppc64le                                                   
  libcutl-1.10.0-25.fc38.ppc64le                                                
  libgfortran-13.0.0-0.4.fc38.ppc64le                                           
  libicu-71.1-2.fc38.ppc64le                                                    
  libicu-devel-71.1-2.fc38.ppc64le                                              
  libmpc-1.2.1-5.fc38.ppc64le                                                   
  libquadmath-13.0.0-0.4.fc38.ppc64le                                           
  libstdc++-devel-13.0.0-0.4.fc38.ppc64le                                       
  libtirpc-devel-1.3.3-0.fc38.ppc64le                                           
  libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le                                         
  libubsan-13.0.0-0.4.fc38.ppc64le                                              
  libuv-1:1.44.2-2.fc38.ppc64le                                                 
  libxcrypt-devel-4.4.33-5.fc38.ppc64le                                         
  make-1:4.3-11.fc38.ppc64le                                                    
  mpdecimal-2.5.1-4.fc38.ppc64le                                                
  openblas-0.3.21-4.fc38.ppc64le                                                
  openblas-openmp-0.3.21-4.fc38.ppc64le                                         
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-1.fc38.ppc64le                                                 
  python3-libs-3.11.1-1.fc38.ppc64le                                            
  python3-numpy-1:1.23.5-1.fc38.ppc64le                                         
  rhash-1.4.3-1.fc38.ppc64le                                                    
  sqlite-3.40.0-1.fc38.ppc64le                                                  
  sqlite-devel-3.40.0-1.fc38.ppc64le                                            
  tokyocabinet-1.4.48-20.fc37.ppc64le                                           
  tokyocabinet-devel-1.4.48-20.fc37.ppc64le                                     
  vim-filesystem-2:9.0.1054-1.fc38.noarch                                       
  xerces-c-3.2.3-7.fc37.ppc64le                                                 
  xerces-c-devel-3.2.3-7.fc37.ppc64le                                           
  xsd-4.1.0-0.10.a11.fc37.ppc64le                                               
  zlib-devel-1.2.13-1.fc38.ppc64le                                              

Complete!
Finish: build setup for percolator-3.05-10.fc38.src.rpm
Start: rpmbuild percolator-3.05-10.fc38.src.rpm
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1658448000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.TCgmbz
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf percolator-rel-3-05
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/percolator-rel-3-05.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd percolator-rel-3-05
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ tar -xvf /builddir/build/SOURCES/yeast-01.sqt.tar.gz
yeast-01.shuffled2.sqt
yeast-01.shuffled.sqt
yeast-01.sqt
+ find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.xx' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec chmod 0644 '{}' ';'
+ chmod a-x src/converters/MSToolkit/RAMP/README
+ mv src/converters/MSToolkit/RAMP/README src/converters/MSToolkit/RAMP/RAMP-README
+ mv src/converters/MSToolkit/RAMP/Readme.Mike.txt src/converters/MSToolkit/RAMP/RAMP-Readme.Mike.txt
+ cp -p /builddir/build/SOURCES/percolator-RAMP_license_lgpl-2.1.txt RAMP_license_lgpl-2.1.txt
+ sed -e 's|./bin|bin|g' -i src/qvality/CMakeLists.txt
+ sed -e 's|${ELUDE_MODELS_PATH}..|${ELUDE_MODELS_PATH}|g' -i src/elude_tool/CMakeLists.txt
+ sed -e 's|${CMAKE_INSTALL_PREFIX}/share/elude/models/|${CMAKE_INSTALL_PREFIX}/share/elude|g' -i src/elude_tool/CMakeLists.txt
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.mLchBr
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd percolator-rel-3-05
+ export 'CXXFLAGS=-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ CXXFLAGS='-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ mkdir -p percolator
~/build/BUILD/percolator-rel-3-05/percolator ~/build/BUILD/percolator-rel-3-05
+ pushd percolator
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_VERBOSE_MAKEFILE=TRUE -DXML_SUPPORT:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc' '-DCMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc' -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_SKIP_RPATH:BOOL=YES -DTARGET_ARCH=ppc64le ..
-- The C compiler identification is GNU 13.0.0
-- The CXX compiler identification is GNU 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- 
-- -------------------------------------------------------------------------------
-- Building PERCOLATOR:
-- change a configuration variable with: cmake -D<Variable>=<Value>
-- CMAKE_INSTALL_PREFIX = /usr
-- CMAKE_BUILD_TYPE = Release
-- CMAKE_PREFIX_PATH = ../
-- XML_SUPPORT = ON
-- GOOGLE_TEST = 
-- GOOGLE_TEST_PATH = 
-- TARGET_ARCH = ppc64le
-- TOOL CHAIN FILE = 
-- PROFILING = 
-- -------------------------------------------------------------------------------
-- 
-- Architecture: 
-- Checking packages:
-- Found Xerces-C: /usr/lib64/libxerces-c.so
--               : /usr/include
--        Version: 3.2.3
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Locating CodeSynthesis library with XSDDIR set to 
-- Package CodeSynthesis XSD found: /usr/include, /usr/bin/xsdcxx
-- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.46.0")  
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_SKIP_INSTALL_RPATH
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/percolator-rel-3-05/percolator
+ cd src
+ xsdcxx cxx-tree --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://per-colator.com/percolator_in/13=percolatorInNs ../../src/xml/percolator_in.xsd
+ xsdcxx cxx-tree --generate-serialization --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://per-colator.com/percolator_out/15=percolatorOutNs ../../src/xml/percolator_out.xsd
+ cd ..
+ /usr/bin/make -O -j5 V=1 VERBOSE=1
/usr/bin/cmake -S/builddir/build/BUILD/percolator-rel-3-05 -B/builddir/build/BUILD/percolator-rel-3-05/percolator --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/percolator/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/percolator//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
/usr/bin/make  -f src/CMakeFiles/perclibrary.dir/build.make src/CMakeFiles/perclibrary.dir/depend
/usr/bin/make  -f src/picked_protein/CMakeFiles/picked_protein.dir/build.make src/picked_protein/CMakeFiles/picked_protein.dir/depend
/usr/bin/make  -f src/blas/CMakeFiles/blas.dir/build.make src/blas/CMakeFiles/blas.dir/depend
/usr/bin/make  -f src/fido/CMakeFiles/fido.dir/build.make src/fido/CMakeFiles/fido.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein/CMakeFiles/picked_protein.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/blas /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas/CMakeFiles/blas.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/fido /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido/CMakeFiles/fido.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src /builddir/build/BUILD/percolator-rel-3-05/percolator/src/CMakeFiles/perclibrary.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[  5%] Building C object src/blas/CMakeFiles/blas.dir/daxpy.c.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/gcc -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O3 -Wall -Wconversion -fPIC -DNDEBUG -O3 -DNDEBUG -MD -MT src/blas/CMakeFiles/blas.dir/daxpy.c.o -MF CMakeFiles/blas.dir/daxpy.c.o.d -o CMakeFiles/blas.dir/daxpy.c.o -c /builddir/build/BUILD/percolator-rel-3-05/src/blas/daxpy.c
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[  8%] Building C object src/blas/CMakeFiles/blas.dir/ddot.c.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/gcc -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O3 -Wall -Wconversion -fPIC -DNDEBUG -O3 -DNDEBUG -MD -MT src/blas/CMakeFiles/blas.dir/ddot.c.o -MF CMakeFiles/blas.dir/ddot.c.o.d -o CMakeFiles/blas.dir/ddot.c.o -c /builddir/build/BUILD/percolator-rel-3-05/src/blas/ddot.c
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/gcc -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O3 -Wall -Wconversion -fPIC -DNDEBUG -O3 -DNDEBUG -MD -MT src/blas/CMakeFiles/blas.dir/dgemv.c.o -MF CMakeFiles/blas.dir/dgemv.c.o.d -o CMakeFiles/blas.dir/dgemv.c.o -c /builddir/build/BUILD/percolator-rel-3-05/src/blas/dgemv.c
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/builddir/build/BUILD/percolator-rel-3-05/src/blas/dgemv.c: In function 'dgemv_':
/builddir/build/BUILD/percolator-rel-3-05/src/blas/dgemv.c:59:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   59 |     if (*m == 0 || *n == 0 || *alpha == 0.0 && *beta == 1.0) {
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
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[  2%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/__/Logger.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/__/Logger.cpp.o -MF CMakeFiles/picked_protein.dir/__/Logger.cpp.o.d -o CMakeFiles/picked_protein.dir/__/Logger.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Logger.cpp
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/gcc -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O3 -Wall -Wconversion -fPIC -DNDEBUG -O3 -DNDEBUG -MD -MT src/blas/CMakeFiles/blas.dir/dnrm2.c.o -MF CMakeFiles/blas.dir/dnrm2.c.o.d -o CMakeFiles/blas.dir/dnrm2.c.o -c /builddir/build/BUILD/percolator-rel-3-05/src/blas/dnrm2.c
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/__/Globals.cpp.o -MF CMakeFiles/picked_protein.dir/__/Globals.cpp.o.d -o CMakeFiles/picked_protein.dir/__/Globals.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Globals.cpp
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/gcc -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O3 -Wall -Wconversion -fPIC -DNDEBUG -O3 -DNDEBUG -MD -MT src/blas/CMakeFiles/blas.dir/dscal.c.o -MF CMakeFiles/blas.dir/dscal.c.o.d -o CMakeFiles/blas.dir/dscal.c.o -c /builddir/build/BUILD/percolator-rel-3-05/src/blas/dscal.c
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/cmake -P CMakeFiles/blas.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas && /usr/bin/cmake -E cmake_link_script CMakeFiles/blas.dir/link.txt --verbose=1
/usr/bin/ar rcv libblas.a CMakeFiles/blas.dir/daxpy.c.o CMakeFiles/blas.dir/ddot.c.o CMakeFiles/blas.dir/dgemv.c.o CMakeFiles/blas.dir/dnrm2.c.o CMakeFiles/blas.dir/dscal.c.o
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/Database.cpp.o -MF CMakeFiles/picked_protein.dir/Database.cpp.o.d -o CMakeFiles/picked_protein.dir/Database.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Database.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Database.cpp: In member function 'void PercolatorCrux::Database::print(FILE*)':
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Database.cpp:206:12: warning: unused variable 'protein' [-Wunused-variable]
  206 |   Protein* protein = NULL;
      |            ^~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 20%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/Peptide.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/Peptide.cpp.o -MF CMakeFiles/picked_protein.dir/Peptide.cpp.o.d -o CMakeFiles/picked_protein.dir/Peptide.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Peptide.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Peptide.cpp:375:13: warning: 'bool equal_peptides(char*, PercolatorCrux::Peptide*)' defined but not used [-Wunused-function]
  375 | static bool equal_peptides(
      |             ^~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 14%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/__/Option.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/__/Option.cpp.o -MF CMakeFiles/picked_protein.dir/__/Option.cpp.o.d -o CMakeFiles/picked_protein.dir/__/Option.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Option.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 21%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/PeptideConstraint.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/PeptideConstraint.cpp.o -MF CMakeFiles/picked_protein.dir/PeptideConstraint.cpp.o.d -o CMakeFiles/picked_protein.dir/PeptideConstraint.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/PeptideConstraint.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 22%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/PeptideSrc.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/PeptideSrc.cpp.o -MF CMakeFiles/picked_protein.dir/PeptideSrc.cpp.o.d -o CMakeFiles/picked_protein.dir/PeptideSrc.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/PeptideSrc.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 25%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/Protein.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/Protein.cpp.o -MF CMakeFiles/picked_protein.dir/Protein.cpp.o.d -o CMakeFiles/picked_protein.dir/Protein.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp: In member function 'void PercolatorCrux::Protein::shuffle(PercolatorCrux::DECOY_TYPE_T)':
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:529:9: warning: enumeration value 'PEPTIDE_REVERSE_DECOYS' not handled in switch [-Wswitch]
  529 |   switch(decoy_type){
      |         ^
In function 'PercolatorCrux::Protein::readRawSequence(_IO_FILE*, char*, unsigned int, char*, unsigned int*)',
    inlined from 'PercolatorCrux::Protein::parseProteinFastaFile(_IO_FILE*)' at /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:366:23:
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:505:23: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  505 |   raw_sequence[i_seq] = '\0';
      |   ~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp: In member function 'PercolatorCrux::Protein::parseProteinFastaFile(_IO_FILE*)':
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:355:15: note: at offset 40000 into destination object 'PercolatorCrux::Protein::parseProteinFastaFile(_IO_FILE*)::buffer' of size 40000
  355 |   static char buffer[PROTEIN_SEQUENCE_LENGTH];///> The sequence to read in.
      |               ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 26%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/ProteinPeptideIterator.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/ProteinPeptideIterator.cpp.o -MF CMakeFiles/picked_protein.dir/ProteinPeptideIterator.cpp.o.d -o CMakeFiles/picked_protein.dir/ProteinPeptideIterator.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/ProteinPeptideIterator.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[  4%] Building CXX object src/fido/CMakeFiles/fido.dir/BasicBigraph.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/BasicBigraph.cpp.o -MF CMakeFiles/fido.dir/BasicBigraph.cpp.o.d -o CMakeFiles/fido.dir/BasicBigraph.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:5,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/HashTable.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/StringTable.h:9,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:6:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 17%] Building CXX object src/fido/CMakeFiles/fido.dir/BasicGroupBigraph.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/BasicGroupBigraph.cpp.o -MF CMakeFiles/fido.dir/BasicGroupBigraph.cpp.o.d -o CMakeFiles/fido.dir/BasicGroupBigraph.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/HashTable.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:5,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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[ 30%] Building CXX object src/fido/CMakeFiles/fido.dir/Numerical.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/Numerical.cpp.o -MF CMakeFiles/fido.dir/Numerical.cpp.o.d -o CMakeFiles/fido.dir/Numerical.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Numerical.cpp
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[  6%] Building CXX object src/CMakeFiles/perclibrary.dir/percolator_in.cxx.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/percolator_in.cxx.o -MF CMakeFiles/perclibrary.dir/percolator_in.cxx.o.d -o CMakeFiles/perclibrary.dir/percolator_in.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/percolator/src/percolator_in.cxx
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[ 32%] Building CXX object src/fido/CMakeFiles/fido.dir/Random.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/Random.cpp.o -MF CMakeFiles/fido.dir/Random.cpp.o.d -o CMakeFiles/fido.dir/Random.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Random.cpp
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/parser.cxx.o -MF CMakeFiles/perclibrary.dir/parser.cxx.o.d -o CMakeFiles/perclibrary.dir/parser.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx: In constructor 'parser_impl::parser_impl()':
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:106:33: warning: 'parser_impl::gp_' will be initialized after [-Wreorder]
  106 |   std::auto_ptr<XMLGrammarPool> gp_; // (new XMLGrammarPoolImpl (mm));
      |                                 ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:102:22: warning:   'xercesc_3_2::DOMImplementation& parser_impl::dom_impl_' [-Wreorder]
  102 |   DOMImplementation& dom_impl_;
      |                      ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:144:1: warning:   when initialized here [-Wreorder]
  144 | parser_impl::parser_impl() : clean_(true),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx: In member function 'xsd::cxx::xml::dom::auto_ptr<xercesc_3_2::DOMDocument> parser_impl::start(std::istream&, const std::string&, bool, std::string, std::string, std::string, std::string, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:178:14: warning: unused variable 'n' [-Wunused-variable]
  178 |       size_t n(s.size());
      |              ^
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:170:9: warning: unused variable 'i' [-Wunused-variable]
  170 |     int i(1);
      |         ^
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[ 34%] Building CXX object src/fido/CMakeFiles/fido.dir/Set.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/Set.cpp.o -MF CMakeFiles/fido.dir/Set.cpp.o.d -o CMakeFiles/fido.dir/Set.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
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[ 24%] Building CXX object src/picked_protein/CMakeFiles/picked_protein.dir/PickedProteinCaller.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/picked_protein/CMakeFiles/picked_protein.dir/PickedProteinCaller.cpp.o -MF CMakeFiles/picked_protein.dir/PickedProteinCaller.cpp.o.d -o CMakeFiles/picked_protein.dir/PickedProteinCaller.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/PickedProteinCaller.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/PickedProteinCaller.cpp: In member function 'bool PickedProteinCaller::getProteinFragmentsAndDuplicates(std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&, std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/PickedProteinCaller.cpp:365:8: warning: unused variable 'success' [-Wunused-variable]
  365 |   bool success = true;
      |        ^~~~~~~
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/cmake -P CMakeFiles/picked_protein.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein && /usr/bin/cmake -E cmake_link_script CMakeFiles/picked_protein.dir/link.txt --verbose=1
/usr/bin/ar qc libpicked_protein.a CMakeFiles/picked_protein.dir/__/Globals.cpp.o CMakeFiles/picked_protein.dir/__/Logger.cpp.o CMakeFiles/picked_protein.dir/__/MyException.cpp.o CMakeFiles/picked_protein.dir/__/Option.cpp.o CMakeFiles/picked_protein.dir/Database.cpp.o CMakeFiles/picked_protein.dir/Peptide.cpp.o CMakeFiles/picked_protein.dir/PeptideConstraint.cpp.o CMakeFiles/picked_protein.dir/PeptideSrc.cpp.o CMakeFiles/picked_protein.dir/PickedProteinCaller.cpp.o CMakeFiles/picked_protein.dir/Protein.cpp.o CMakeFiles/picked_protein.dir/ProteinPeptideIterator.cpp.o
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/serializer.cxx.o -MF CMakeFiles/perclibrary.dir/serializer.cxx.o.d -o CMakeFiles/perclibrary.dir/serializer.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/src/serializer.cxx
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cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/Vector.cpp.o -MF CMakeFiles/fido.dir/Vector.cpp.o.d -o CMakeFiles/fido.dir/Vector.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.cpp
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[ 42%] Building CXX object src/CMakeFiles/perclibrary.dir/MassHandler.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/MassHandler.cpp.o -MF CMakeFiles/perclibrary.dir/MassHandler.cpp.o.d -o CMakeFiles/perclibrary.dir/MassHandler.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/MassHandler.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 40%] Building CXX object src/CMakeFiles/perclibrary.dir/BaseSpline.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/BaseSpline.cpp.o -MF CMakeFiles/perclibrary.dir/BaseSpline.cpp.o.d -o CMakeFiles/perclibrary.dir/BaseSpline.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.cpp:24:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 44%] Building CXX object src/CMakeFiles/perclibrary.dir/PSMDescription.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PSMDescription.cpp.o -MF CMakeFiles/perclibrary.dir/PSMDescription.cpp.o.d -o CMakeFiles/perclibrary.dir/PSMDescription.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PSMDescription.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 46%] Building CXX object src/CMakeFiles/perclibrary.dir/ResultHolder.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/ResultHolder.cpp.o -MF CMakeFiles/perclibrary.dir/ResultHolder.cpp.o.d -o CMakeFiles/perclibrary.dir/ResultHolder.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/ResultHolder.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 41%] Building CXX object src/CMakeFiles/perclibrary.dir/DescriptionOfCorrect.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/DescriptionOfCorrect.cpp.o -MF CMakeFiles/perclibrary.dir/DescriptionOfCorrect.cpp.o.d -o CMakeFiles/perclibrary.dir/DescriptionOfCorrect.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/DescriptionOfCorrect.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DescriptionOfCorrect.cpp:23:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 45%] Building CXX object src/CMakeFiles/perclibrary.dir/PSMDescriptionDOC.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PSMDescriptionDOC.cpp.o -MF CMakeFiles/perclibrary.dir/PSMDescriptionDOC.cpp.o.d -o CMakeFiles/perclibrary.dir/PSMDescriptionDOC.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp:21:
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h: In constructor 'PSMDescriptionDOC::PSMDescriptionDOC()':
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:42: warning: 'PSMDescriptionDOC::retentionTime_' will be initialized after [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:26: warning:   'double PSMDescriptionDOC::predictedTime_' [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp:26:1: warning:   when initialized here [-Wreorder]
   26 | PSMDescriptionDOC::PSMDescriptionDOC() :
      | ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h: In constructor 'PSMDescriptionDOC::PSMDescriptionDOC(std::string, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:42: warning: 'PSMDescriptionDOC::retentionTime_' will be initialized after [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:26: warning:   'double PSMDescriptionDOC::predictedTime_' [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp:30:1: warning:   when initialized here [-Wreorder]
   30 | PSMDescriptionDOC::PSMDescriptionDOC(const string pep, const double retTime) :
      | ^~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 49%] Building CXX object src/CMakeFiles/perclibrary.dir/StdvNormalizer.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/StdvNormalizer.cpp.o -MF CMakeFiles/perclibrary.dir/StdvNormalizer.cpp.o.d -o CMakeFiles/perclibrary.dir/StdvNormalizer.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/StdvNormalizer.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 29%] Building CXX object src/fido/CMakeFiles/fido.dir/GroupPowerBigraph.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/fido/CMakeFiles/fido.dir/GroupPowerBigraph.cpp.o -MF CMakeFiles/fido.dir/GroupPowerBigraph.cpp.o.d -o CMakeFiles/fido.dir/GroupPowerBigraph.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/GroupPowerBigraph.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/HashTable.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/GroupPowerBigraph.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/GroupPowerBigraph.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:5,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 53%] Linking CXX static library libfido.a
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/cmake -P CMakeFiles/fido.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido && /usr/bin/cmake -E cmake_link_script CMakeFiles/fido.dir/link.txt --verbose=1
/usr/bin/ar qc libfido.a CMakeFiles/fido.dir/BasicBigraph.cpp.o CMakeFiles/fido.dir/BasicGroupBigraph.cpp.o CMakeFiles/fido.dir/GroupPowerBigraph.cpp.o CMakeFiles/fido.dir/Numerical.cpp.o CMakeFiles/fido.dir/Random.cpp.o CMakeFiles/fido.dir/Set.cpp.o CMakeFiles/fido.dir/Vector.cpp.o
/usr/bin/ranlib libfido.a
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 53%] Built target fido
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 52%] Building CXX object src/CMakeFiles/perclibrary.dir/svm.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/svm.cpp.o -MF CMakeFiles/perclibrary.dir/svm.cpp.o.d -o CMakeFiles/perclibrary.dir/svm.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/svm.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 50%] Building CXX object src/CMakeFiles/perclibrary.dir/SetHandler.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/SetHandler.cpp.o -MF CMakeFiles/perclibrary.dir/SetHandler.cpp.o.d -o CMakeFiles/perclibrary.dir/SetHandler.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.h:36,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp: In member function 'int SetHandler::getNumFeatures(const std::string&, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp:158:10: warning: variable 'a' set but not used [-Wunused-but-set-variable]
  158 |   double a = reader.readDouble();
      |          ^
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp: In member function 'void SetHandler::readPSMs(std::istream&, std::string&, bool, bool&, std::vector<OptionalField>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp:290:18: warning: unused variable 'targetIdx' [-Wunused-variable]
  290 |     unsigned int targetIdx = 0u, decoyIdx = 0u;
      |                  ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp:290:34: warning: unused variable 'decoyIdx' [-Wunused-variable]
  290 |     unsigned int targetIdx = 0u, decoyIdx = 0u;
      |                                  ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp: In member function 'int SetHandler::readAndScoreTab(std::istream&, std::vector<double>&, Scores&, SanityCheck*&)':
/builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.cpp:489:46: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  489 |   if (hasDefaultValues && init_values.size() > numFeatures) {
      |                           ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 48%] Building CXX object src/CMakeFiles/perclibrary.dir/XMLInterface.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/XMLInterface.cpp.o -MF CMakeFiles/perclibrary.dir/XMLInterface.cpp.o.d -o CMakeFiles/perclibrary.dir/XMLInterface.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.h:36,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.h:29,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.h: In constructor 'XMLInterface::XMLInterface(const std::string&, bool, bool, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.h:99:8: warning: 'XMLInterface::reportUniquePeptides_' will be initialized after [-Wreorder]
   99 |   bool reportUniquePeptides_;
      |        ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.h:93:8: warning:   'bool XMLInterface::printDecoys_' [-Wreorder]
   93 |   bool printDecoys_, printExpMass_;
      |        ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.cpp:58:1: warning:   when initialized here [-Wreorder]
   58 | XMLInterface::XMLInterface(const std::string& outputFN,
      | ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.cpp: In member function 'int XMLInterface::readAndScorePin(std::istream&, std::vector<double>&, Scores&, const std::string&, SetHandler&, SanityCheck*&, ProteinProbEstimator*, Enzyme*&)':
/builddir/build/BUILD/percolator-rel-3-05/src/XMLInterface.cpp:257:26: warning: unused variable 'numFeatures' [-Wunused-variable]
  257 |       const unsigned int numFeatures = FeatureNames::getNumFeatures();
      |                          ^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 57%] Building CXX object src/CMakeFiles/perclibrary.dir/Enzyme.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Enzyme.cpp.o -MF CMakeFiles/perclibrary.dir/Enzyme.cpp.o.d -o CMakeFiles/perclibrary.dir/Enzyme.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Enzyme.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 58%] Building CXX object src/CMakeFiles/perclibrary.dir/Globals.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Globals.cpp.o -MF CMakeFiles/perclibrary.dir/Globals.cpp.o.d -o CMakeFiles/perclibrary.dir/Globals.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Globals.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 60%] Building CXX object src/CMakeFiles/perclibrary.dir/Normalizer.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Normalizer.cpp.o -MF CMakeFiles/perclibrary.dir/Normalizer.cpp.o.d -o CMakeFiles/perclibrary.dir/Normalizer.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Normalizer.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 62%] Building CXX object src/CMakeFiles/perclibrary.dir/UniNormalizer.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/UniNormalizer.cpp.o -MF CMakeFiles/perclibrary.dir/UniNormalizer.cpp.o.d -o CMakeFiles/perclibrary.dir/UniNormalizer.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/UniNormalizer.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 61%] Building CXX object src/CMakeFiles/perclibrary.dir/SanityCheck.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/SanityCheck.cpp.o -MF CMakeFiles/perclibrary.dir/SanityCheck.cpp.o.d -o CMakeFiles/perclibrary.dir/SanityCheck.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.cpp:21:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.cpp:24:
/builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.h: In constructor 'SanityCheck::SanityCheck()':
/builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.h:87:8: warning: 'SanityCheck::concatenatedSearch_' will be initialized after [-Wreorder]
   87 |   bool concatenatedSearch_;
      |        ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.h:72:10: warning:   'double SanityCheck::test_fdr_' [-Wreorder]
   72 |   double test_fdr_, initial_train_fdr_;
      |          ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/SanityCheck.cpp:31:1: warning:   when initialized here [-Wreorder]
   31 | SanityCheck::SanityCheck() :
      | ^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 56%] Building CXX object src/CMakeFiles/perclibrary.dir/CrossValidation.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/CrossValidation.cpp.o -MF CMakeFiles/perclibrary.dir/CrossValidation.cpp.o.d -o CMakeFiles/perclibrary.dir/CrossValidation.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.h:28,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.h:29:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.h: In constructor 'CrossValidation::CrossValidation(bool, bool, double, double, double, double, double, int, bool, int, bool, unsigned int, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.h:101:8: warning: 'CrossValidation::trainBestPositive_' will be initialized after [-Wreorder]
  101 |   bool trainBestPositive_;
      |        ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.h:90:16: warning:   'unsigned int CrossValidation::numThreads_' [-Wreorder]
   90 |   unsigned int numThreads_;
      |                ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:32:1: warning:   when initialized here [-Wreorder]
   32 | CrossValidation::CrossValidation(bool quickValidation,
      | ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp: In member function 'int CrossValidation::preIterationSetup(Scores&, SanityCheck*, Normalizer*, FeatureMemoryPool&)':
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:106:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  106 |   for (int set = 0; set < numFolds_; ++set) {
      |                     ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:107:39: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  107 |     for (int nestedSet = 0; nestedSet < nestedXvalBins_; nestedSet++) {
      |                             ~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:141:27: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  141 |     for (int set = 0; set < numFolds_; ++set) {
      |                       ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:145:27: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  145 |     for (int set = 0; set < numFolds_; ++set) {
      |                       ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp: In member function 'int CrossValidation::doStep(bool, Normalizer*, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:263:25: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  263 |   for (int set = 0; set < numFolds_; ++set) {
      |                     ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:269:27: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  269 |     for (int set = 0; set < numFolds_; ++set) {
      |                       ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:291:26: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  291 |    for (int set = 0; set < numFolds_; ++set) {
      |                      ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:303:42: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  303 |      for (int nestedFold = 0; nestedFold < nestedXvalBins_; ++nestedFold)
      |                               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:318:34: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<candidateCposCfrac>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  318 |    for (int pairIdx = 0; pairIdx < classWeightsPerFold_.size(); pairIdx++){
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp: In member function 'void CrossValidation::trainCpCnPair(candidateCposCfrac&, options*, AlgIn*)':
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:343:16: warning: unused variable 'set' [-Wunused-variable]
  343 |   unsigned int set = cpCnFold.set;
      |                ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:344:16: warning: unused variable 'nestedFold' [-Wunused-variable]
  344 |   unsigned int nestedFold = cpCnFold.nestedSet;
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:356:7: warning: unused variable 'tp' [-Wunused-variable]
  356 |   int tp = 0;
      |       ^~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp: In member function 'int CrossValidation::mergeCpCnPairs(double, options*, std::vector<std::vector<Scores> >&, const std::vector<double>&, const std::vector<double>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:399:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  399 |   for (set = 0; set < numFolds_; ++set) {
      |                 ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:439:23: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  439 |     for (set = 0; set < numFolds_; ++set) {
      |                   ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:474:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  474 |   for (set = 0; set < numFolds_; ++set) {
      |                 ~~~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp: In member function 'void CrossValidation::postIterationProcessing(Scores&, SanityCheck*)':
/builddir/build/BUILD/percolator-rel-3-05/src/CrossValidation.cpp:483:27: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare]
  483 |     for (int set = 0; set < numFolds_; ++set) {
      |                       ~~~~^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 65%] Building CXX object src/CMakeFiles/perclibrary.dir/FeatureNames.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/FeatureNames.cpp.o -MF CMakeFiles/perclibrary.dir/FeatureNames.cpp.o.d -o CMakeFiles/perclibrary.dir/FeatureNames.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/FeatureNames.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 64%] Building CXX object src/CMakeFiles/perclibrary.dir/DataSet.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/DataSet.cpp.o -MF CMakeFiles/perclibrary.dir/DataSet.cpp.o.d -o CMakeFiles/perclibrary.dir/DataSet.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/DataSet.cpp: In member function 'void DataSet::print_features()':
/builddir/build/BUILD/percolator-rel-3-05/src/DataSet.cpp:69:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   69 |   for (int i = 0; i < getSize(); i++) {
      |                   ~~^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 28%] Building CXX object src/CMakeFiles/perclibrary.dir/percolator_out.cxx.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/percolator_out.cxx.o -MF CMakeFiles/perclibrary.dir/percolator_out.cxx.o.d -o CMakeFiles/perclibrary.dir/percolator_out.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/percolator/src/percolator_out.cxx
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 66%] Building CXX object src/CMakeFiles/perclibrary.dir/LogisticRegression.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/LogisticRegression.cpp.o -MF CMakeFiles/perclibrary.dir/LogisticRegression.cpp.o.d -o CMakeFiles/perclibrary.dir/LogisticRegression.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.cpp:27:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 68%] Building CXX object src/CMakeFiles/perclibrary.dir/Option.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Option.cpp.o -MF CMakeFiles/perclibrary.dir/Option.cpp.o.d -o CMakeFiles/perclibrary.dir/Option.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Option.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 72%] Building CXX object src/CMakeFiles/perclibrary.dir/ProteinFDRestimator.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/ProteinFDRestimator.cpp.o -MF CMakeFiles/perclibrary.dir/ProteinFDRestimator.cpp.o.d -o CMakeFiles/perclibrary.dir/ProteinFDRestimator.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/ProteinFDRestimator.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 74%] Building CXX object src/CMakeFiles/perclibrary.dir/PseudoRandom.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PseudoRandom.cpp.o -MF CMakeFiles/perclibrary.dir/PseudoRandom.cpp.o.d -o CMakeFiles/perclibrary.dir/PseudoRandom.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PseudoRandom.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 76%] Building CXX object src/CMakeFiles/perclibrary.dir/SqtSanityCheck.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/SqtSanityCheck.cpp.o -MF CMakeFiles/perclibrary.dir/SqtSanityCheck.cpp.o.d -o CMakeFiles/perclibrary.dir/SqtSanityCheck.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/SqtSanityCheck.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SqtSanityCheck.cpp:17:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 70%] Building CXX object src/CMakeFiles/perclibrary.dir/ProteinProbEstimator.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/ProteinProbEstimator.cpp.o -MF CMakeFiles/perclibrary.dir/ProteinProbEstimator.cpp.o.d -o CMakeFiles/perclibrary.dir/ProteinProbEstimator.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:34:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h: In constructor 'ProteinProbEstimator::ProteinProbEstimator(bool, double, bool, std::string, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:238:16: warning: 'ProteinProbEstimator::absenceRatio_' will be initialized after [-Wreorder]
  238 |   double pi0_, absenceRatio_;
      |                ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:238:10: warning:   'double ProteinProbEstimator::pi0_' [-Wreorder]
  238 |   double pi0_, absenceRatio_;
      |          ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.cpp:25:1: warning:   when initialized here [-Wreorder]
   25 | ProteinProbEstimator::ProteinProbEstimator(bool trivialGrouping, double absenceRatio,
      | ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:242:16: warning: 'ProteinProbEstimator::numberTargetProteins_' will be initialized after [-Wreorder]
  242 |   unsigned int numberTargetProteins_;
      |                ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:237:8: warning:   'bool ProteinProbEstimator::usePi0_' [-Wreorder]
  237 |   bool usePi0_;
      |        ^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.cpp:25:1: warning:   when initialized here [-Wreorder]
   25 | ProteinProbEstimator::ProteinProbEstimator(bool trivialGrouping, double absenceRatio,
      | ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:243:15: warning: 'ProteinProbEstimator::decoyPattern_' will be initialized after [-Wreorder]
  243 |   std::string decoyPattern_;
      |               ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:240:10: warning:   'double ProteinProbEstimator::fdr_' [-Wreorder]
  240 |   double fdr_;
      |          ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.cpp:25:1: warning:   when initialized here [-Wreorder]
   25 | ProteinProbEstimator::ProteinProbEstimator(bool trivialGrouping, double absenceRatio,
      | ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 54%] Building CXX object src/CMakeFiles/perclibrary.dir/Caller.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Caller.cpp.o -MF CMakeFiles/perclibrary.dir/Caller.cpp.o.d -o CMakeFiles/perclibrary.dir/Caller.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Caller.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.h:36,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/Caller.h:36,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/Caller.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/Caller.h: In constructor 'Caller::Caller()':
/builddir/build/BUILD/percolator-rel-3-05/src/Caller.h:103:48: warning: 'Caller::trainBestPositive_' will be initialized after [-Wreorder]
  103 |   bool reportEachIteration_, quickValidation_, trainBestPositive_,
      |                                                ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Caller.h:101:59: warning:   'unsigned int Caller::numThreads_' [-Wreorder]
  101 |   unsigned int numIterations_, maxPSMs_, nestedXvalBins_, numThreads_;
      |                                                           ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Caller.cpp:35:1: warning:   when initialized here [-Wreorder]
   35 | Caller::Caller() :
      | ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Caller.cpp: In member function 'bool Caller::parseOptions(int, char**)':
/builddir/build/BUILD/percolator-rel-3-05/src/Caller.cpp:694:7: warning: label 'std' defined but not used [-Wunused-label]
  694 |       std:cerr << "Error: the --static option requires the --init-weights "
      |       ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 77%] Building CXX object src/CMakeFiles/perclibrary.dir/ssl.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/ssl.cpp.o -MF CMakeFiles/perclibrary.dir/ssl.cpp.o.d -o CMakeFiles/perclibrary.dir/ssl.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp: In function 'void cglsFun2(int, int*, const double*, double*, int, int, double*, double*, double*, double*, double, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:86:7: warning: unused variable 'ind' [-Wunused-variable]
   86 |   int ind = 0;
      |       ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:87:10: warning: unused variable 'temp' [-Wunused-variable]
   87 |   double temp = 0.0;
      |          ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp: In function 'int CGLS(const AlgIn&, double, int, double, const vector_int*, vector_double*, vector_double*, double, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:117:19: warning: unused variable 'j' [-Wunused-variable]
  117 |   register int i, j;
      |                   ^
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp: In function 'int L2_SVM_MFN(const AlgIn&, options*, vector_double*, vector_double*, double, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:251:10: warning: unused variable 't' [-Wunused-variable]
  251 |   double t = 0.0;
      |          ^
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp: In function 'double line_search(double*, double*, double, double*, double*, const double*, int, int, double, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:364:7: warning: unused variable 'inc' [-Wunused-variable]
  364 |   int inc = 1;
      |       ^~~
In function 'Clear(options*)',
    inlined from 'Clear(options*)' at /builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:440:6:
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:442:12: warning: pointer 'opt_2(D)' used after 'operator delete[](void*)' [-Wuse-after-free]
  442 |   delete[] opt;
      |            ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/ssl.cpp:441:12: note: call to 'operator delete[](void*)' here
  441 |   delete[] opt;
      |            ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 80%] Building CXX object src/CMakeFiles/perclibrary.dir/PackedVector.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PackedVector.cpp.o -MF CMakeFiles/perclibrary.dir/PackedVector.cpp.o.d -o CMakeFiles/perclibrary.dir/PackedVector.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 78%] Building CXX object src/CMakeFiles/perclibrary.dir/EludeModel.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/EludeModel.cpp.o -MF CMakeFiles/perclibrary.dir/EludeModel.cpp.o.d -o CMakeFiles/perclibrary.dir/EludeModel.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/EludeModel.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/EludeModel.cpp:34:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 81%] Building CXX object src/CMakeFiles/perclibrary.dir/PackedMatrix.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PackedMatrix.cpp.o -MF CMakeFiles/perclibrary.dir/PackedMatrix.cpp.o.d -o CMakeFiles/perclibrary.dir/PackedMatrix.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PackedMatrix.cpp
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[ 84%] Building CXX object src/CMakeFiles/perclibrary.dir/Logger.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Logger.cpp.o -MF CMakeFiles/perclibrary.dir/Logger.cpp.o.d -o CMakeFiles/perclibrary.dir/Logger.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Logger.cpp
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[ 85%] Building CXX object src/CMakeFiles/perclibrary.dir/MyException.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/MyException.cpp.o -MF CMakeFiles/perclibrary.dir/MyException.cpp.o.d -o CMakeFiles/perclibrary.dir/MyException.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/MyException.cpp
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[ 88%] Building CXX object src/CMakeFiles/perclibrary.dir/ProteinScoreHolder.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/ProteinScoreHolder.cpp.o -MF CMakeFiles/perclibrary.dir/ProteinScoreHolder.cpp.o.d -o CMakeFiles/perclibrary.dir/ProteinScoreHolder.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/ProteinScoreHolder.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinScoreHolder.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinScoreHolder.h: In constructor 'ProteinScoreHolder::ProteinScoreHolder(std::string, bool, Peptide, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinScoreHolder.h:108:8: warning: 'ProteinScoreHolder::isDecoy_' will be initialized after [-Wreorder]
  108 |   bool isDecoy_;
      |        ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinScoreHolder.h:106:7: warning:   'int ProteinScoreHolder::groupId_' [-Wreorder]
  106 |   int groupId_;
      |       ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/ProteinScoreHolder.cpp:20:1: warning:   when initialized here [-Wreorder]
   20 | ProteinScoreHolder::ProteinScoreHolder(std::string name, bool isDecoy, ProteinScoreHolder::Peptide peptide,
      | ^~~~~~~~~~~~~~~~~~
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[ 69%] Building CXX object src/CMakeFiles/perclibrary.dir/PosteriorEstimator.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PosteriorEstimator.cpp.o -MF CMakeFiles/perclibrary.dir/PosteriorEstimator.cpp.o.d -o CMakeFiles/perclibrary.dir/PosteriorEstimator.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.cpp: In static member function 'static void PosteriorEstimator::getQValuesFromPEP(const std::vector<double>&, std::vector<double>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.cpp:468:21: warning: unused variable 'queue' [-Wunused-variable]
  468 |         int nP = 1, queue = 0;
      |                     ^~~~~
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[ 90%] Building CXX object src/CMakeFiles/perclibrary.dir/FeatureMemoryPool.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/FeatureMemoryPool.cpp.o -MF CMakeFiles/perclibrary.dir/FeatureMemoryPool.cpp.o.d -o CMakeFiles/perclibrary.dir/FeatureMemoryPool.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/FeatureMemoryPool.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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[ 82%] Building CXX object src/CMakeFiles/perclibrary.dir/Matrix.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Matrix.cpp.o -MF CMakeFiles/perclibrary.dir/Matrix.cpp.o.d -o CMakeFiles/perclibrary.dir/Matrix.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Matrix.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 86%] Building CXX object src/CMakeFiles/perclibrary.dir/FidoInterface.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/FidoInterface.cpp.o -MF CMakeFiles/perclibrary.dir/FidoInterface.cpp.o.d -o CMakeFiles/perclibrary.dir/FidoInterface.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.h:20,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:34:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.h: In constructor 'FidoInterface::FidoInterface(double, double, double, bool, bool, bool, unsigned int, double, double, double, double, bool, std::string, bool, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.h:110:10: warning: 'FidoInterface::mseThreshold_' will be initialized after [-Wreorder]
  110 |   double mseThreshold_;
      |          ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.h:106:8: warning:   'bool FidoInterface::doGridSearch_' [-Wreorder]
  106 |   bool doGridSearch_;
      |        ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp:76:1: warning:   when initialized here [-Wreorder]
   76 | FidoInterface::FidoInterface(double alpha, double beta, double gamma,
      | ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp: In member function 'double FidoInterface::estimatePriors(Scores&)':
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp:132:10: warning: variable 'prior' set but not used [-Wunused-but-set-variable]
  132 |   double prior, prior2, prior3, prior4;
      |          ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp: In member function 'void FidoInterface::getEstimated_and_Empirical_FDR(const std::vector<std::vector<std::__cxx11::basic_string<char> > >&, const std::vector<double>&, std::vector<double>&, std::vector<double>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp:556:12: warning: unused variable 'prob' [-Wunused-variable]
  556 |     double prob = probabilities[k];
      |            ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/FidoInterface.cpp:558:14: warning: unused variable 'fpChange' [-Wunused-variable]
  558 |     unsigned fpChange = proteinNames[k].size() - tpChange;
      |              ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 73%] Building CXX object src/CMakeFiles/perclibrary.dir/Scores.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/Scores.cpp.o -MF CMakeFiles/perclibrary.dir/Scores.cpp.o.d -o CMakeFiles/perclibrary.dir/Scores.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Scores.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/Scores.cpp:32:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.cpp: In member function 'void Scores::populateWithPSMs(SetHandler&)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.cpp:292:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  292 |   if (totalNumberOfTargets_ <= (unsigned)(FeatureNames::getNumFeatures() * 5)) {
      |       ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.cpp:295:28: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  295 |   if (totalNumberOfDecoys_ <= (unsigned)(FeatureNames::getNumFeatures() * 5)) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 89%] Building CXX object src/CMakeFiles/perclibrary.dir/PickedProteinInterface.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/perclibrary.dir/PickedProteinInterface.cpp.o -MF CMakeFiles/perclibrary.dir/PickedProteinInterface.cpp.o.d -o CMakeFiles/perclibrary.dir/PickedProteinInterface.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:34,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.h:27,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.h: In constructor 'PickedProteinInterface::PickedProteinInterface(const std::string&, double, bool, bool, bool, double, bool, std::string&, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.h:86:10: warning: 'PickedProteinInterface::maxPeptidePval_' will be initialized after [-Wreorder]
   86 |   double maxPeptidePval_;
      |          ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.h:85:8: warning:   'bool PickedProteinInterface::reportFragmentProteins_' [-Wreorder]
   85 |   bool reportFragmentProteins_, reportDuplicateProteins_;
      |        ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp:22:1: warning:   when initialized here [-Wreorder]
   22 | PickedProteinInterface::PickedProteinInterface(const std::string& fastaDatabase,
      | ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.h:85:33: warning: 'PickedProteinInterface::reportDuplicateProteins_' will be initialized after [-Wreorder]
   85 |   bool reportFragmentProteins_, reportDuplicateProteins_;
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.h:83:26: warning:   'ProteinInferenceMethod PickedProteinInterface::protInferenceMethod_' [-Wreorder]
   83 |   ProteinInferenceMethod protInferenceMethod_;
      |                          ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp:22:1: warning:   when initialized here [-Wreorder]
   22 | PickedProteinInterface::PickedProteinInterface(const std::string& fastaDatabase,
      | ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp: In member function 'virtual bool PickedProteinInterface::initialize(Scores&, const Enzyme*)':
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp:165:36: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  165 |     if (total_non_enzymatic_flanks > peptideScores.size()) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp: In member function 'virtual void PickedProteinInterface::computeProbabilities(const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/PickedProteinInterface.cpp:344:13: warning: unused variable 'significantPeptides' [-Wunused-variable]
  344 |         int significantPeptides = 0;
      |             ^~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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[ 92%] Linking CXX static library libperclibrary.a
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/cmake -P CMakeFiles/perclibrary.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/perclibrary.dir/link.txt --verbose=1
/usr/bin/ar qc libperclibrary.a CMakeFiles/perclibrary.dir/percolator_in.cxx.o CMakeFiles/perclibrary.dir/percolator_out.cxx.o CMakeFiles/perclibrary.dir/parser.cxx.o CMakeFiles/perclibrary.dir/serializer.cxx.o CMakeFiles/perclibrary.dir/BaseSpline.cpp.o CMakeFiles/perclibrary.dir/DescriptionOfCorrect.cpp.o CMakeFiles/perclibrary.dir/MassHandler.cpp.o CMakeFiles/perclibrary.dir/PSMDescription.cpp.o CMakeFiles/perclibrary.dir/PSMDescriptionDOC.cpp.o CMakeFiles/perclibrary.dir/ResultHolder.cpp.o CMakeFiles/perclibrary.dir/XMLInterface.cpp.o CMakeFiles/perclibrary.dir/SetHandler.cpp.o CMakeFiles/perclibrary.dir/StdvNormalizer.cpp.o CMakeFiles/perclibrary.dir/svm.cpp.o CMakeFiles/perclibrary.dir/Caller.cpp.o CMakeFiles/perclibrary.dir/CrossValidation.cpp.o CMakeFiles/perclibrary.dir/Enzyme.cpp.o CMakeFiles/perclibrary.dir/Globals.cpp.o CMakeFiles/perclibrary.dir/Normalizer.cpp.o CMakeFiles/perclibrary.dir/SanityCheck.cpp.o CMakeFiles/perclibrary.dir/UniNormalizer.cpp.o CMakeFiles/perclibrary.dir/DataSet.cpp.o CMakeFiles/perclibrary.dir/FeatureNames.cpp.o CMakeFiles/perclibrary.dir/LogisticRegression.cpp.o CMakeFiles/perclibrary.dir/Option.cpp.o CMakeFiles/perclibrary.dir/PosteriorEstimator.cpp.o CMakeFiles/perclibrary.dir/ProteinProbEstimator.cpp.o CMakeFiles/perclibrary.dir/ProteinFDRestimator.cpp.o CMakeFiles/perclibrary.dir/Scores.cpp.o CMakeFiles/perclibrary.dir/PseudoRandom.cpp.o CMakeFiles/perclibrary.dir/SqtSanityCheck.cpp.o CMakeFiles/perclibrary.dir/ssl.cpp.o CMakeFiles/perclibrary.dir/EludeModel.cpp.o CMakeFiles/perclibrary.dir/PackedVector.cpp.o CMakeFiles/perclibrary.dir/PackedMatrix.cpp.o CMakeFiles/perclibrary.dir/Matrix.cpp.o CMakeFiles/perclibrary.dir/Logger.cpp.o CMakeFiles/perclibrary.dir/MyException.cpp.o CMakeFiles/perclibrary.dir/FidoInterface.cpp.o CMakeFiles/perclibrary.dir/ProteinScoreHolder.cpp.o CMakeFiles/perclibrary.dir/PickedProteinInterface.cpp.o CMakeFiles/perclibrary.dir/FeatureMemoryPool.cpp.o
/usr/bin/ranlib libperclibrary.a
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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/usr/bin/make  -f src/CMakeFiles/percolator.dir/build.make src/CMakeFiles/percolator.dir/depend
/usr/bin/make  -f src/qvality/CMakeFiles/qvality.dir/build.make src/qvality/CMakeFiles/qvality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src /builddir/build/BUILD/percolator-rel-3-05/percolator/src/CMakeFiles/percolator.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/usr/bin/make  -f src/CMakeFiles/percolator.dir/build.make src/CMakeFiles/percolator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/qvality /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/qvality /builddir/build/BUILD/percolator-rel-3-05/percolator/src/qvality/CMakeFiles/qvality.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/usr/bin/make  -f src/qvality/CMakeFiles/qvality.dir/build.make src/qvality/CMakeFiles/qvality.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 97%] Building CXX object src/qvality/CMakeFiles/qvality.dir/qvality_main.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/qvality && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/qvality/CMakeFiles/qvality.dir/qvality_main.cpp.o -MF CMakeFiles/qvality.dir/qvality_main.cpp.o.d -o CMakeFiles/qvality.dir/qvality_main.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/qvality/qvality_main.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/./PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/./BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/./LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/./PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/qvality/qvality_main.cpp:20:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 96%] Building CXX object src/CMakeFiles/percolator.dir/main.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/g++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DXML_SUPPORT -I/builddir/build/BUILD/percolator-rel-3-05/percolator/src -I/builddir/build/BUILD/percolator-rel-3-05/src/. -I/builddir/build/BUILD/percolator-rel-3-05/src/fido -I/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT src/CMakeFiles/percolator.dir/main.cpp.o -MF CMakeFiles/percolator.dir/main.cpp.o.d -o CMakeFiles/percolator.dir/main.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/main.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:31,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/SetHandler.h:36,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/Caller.h:36,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/main.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PackedVector.h:14,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/BaseSpline.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/LogisticRegression.h:23,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/PosteriorEstimator.h:25,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/ProteinProbEstimator.h:33,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/DataSet.h:39:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 98%] Linking CXX executable qvality
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src/qvality && /usr/bin/cmake -E cmake_link_script CMakeFiles/qvality.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc -rdynamic CMakeFiles/qvality.dir/qvality_main.cpp.o -o qvality   -L/builddir/build/BUILD/percolator-rel-3-05/percolator/src  ../libperclibrary.a ../fido/libfido.a 
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[100%] Built target qvality
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[100%] Linking CXX executable percolator
cd /builddir/build/BUILD/percolator-rel-3-05/percolator/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/percolator.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc -rdynamic CMakeFiles/percolator.dir/main.cpp.o -o percolator  libperclibrary.a blas/libblas.a fido/libfido.a picked_protein/libpicked_protein.a -lxerces-c -lstdc++ 
In function 'readRawSequence',
    inlined from 'parseProteinFastaFile' at /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:366:23:
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:505:23: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
  505 |   raw_sequence[i_seq] = '\0';
      |                       ^
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp: In member function 'parseProteinFastaFile':
/builddir/build/BUILD/percolator-rel-3-05/src/picked_protein/Protein.cpp:355:15: note: at offset 40000 into destination object 'buffer' of size 40000
  355 |   static char buffer[PROTEIN_SEQUENCE_LENGTH];///> The sequence to read in.
      |               ^
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[100%] Built target percolator
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/percolator/CMakeFiles 0
+ popd
~/build/BUILD/percolator-rel-3-05
+ mkdir -p fido
~/build/BUILD/percolator-rel-3-05/fido ~/build/BUILD/percolator-rel-3-05
+ pushd fido
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_VERBOSE_MAKEFILE=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DTokyoCabinet_INCLUDE_DIR=/usr/include -DTokyoCabinet_LIBRARY=/usr/lib64/libtokyocabinet.so '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc' '-DCMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc' -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_SKIP_RPATH:BOOL=YES -DTARGET_ARCH=ppc64le ../src/fido
-- The C compiler identification is GNU 13.0.0
-- The CXX compiler identification is GNU 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_C_FLAGS_RELEASE
    CMAKE_EXE_LINKER_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_SKIP_INSTALL_RPATH
    CMAKE_SKIP_RPATH
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
    TARGET_ARCH
    TokyoCabinet_INCLUDE_DIR
    TokyoCabinet_LIBRARY


-- Build files have been written to: /builddir/build/BUILD/percolator-rel-3-05/fido
+ /usr/bin/make -O -j5 V=1 VERBOSE=1
/usr/bin/cmake -S/builddir/build/BUILD/percolator-rel-3-05/src/fido -B/builddir/build/BUILD/percolator-rel-3-05/fido --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/fido/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/fido//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
/usr/bin/make  -f CMakeFiles/fido.dir/build.make CMakeFiles/fido.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
cd /builddir/build/BUILD/percolator-rel-3-05/fido && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/fido /builddir/build/BUILD/percolator-rel-3-05/src/fido /builddir/build/BUILD/percolator-rel-3-05/fido /builddir/build/BUILD/percolator-rel-3-05/fido /builddir/build/BUILD/percolator-rel-3-05/fido/CMakeFiles/fido.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
/usr/bin/make  -f CMakeFiles/fido.dir/build.make CMakeFiles/fido.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 37%] Building CXX object CMakeFiles/fido.dir/Numerical.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/Numerical.o -MF CMakeFiles/fido.dir/Numerical.o.d -o CMakeFiles/fido.dir/Numerical.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Numerical.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 50%] Building CXX object CMakeFiles/fido.dir/Random.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/Random.o -MF CMakeFiles/fido.dir/Random.o.d -o CMakeFiles/fido.dir/Random.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Random.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 75%] Building CXX object CMakeFiles/fido.dir/Set.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/Set.o -MF CMakeFiles/fido.dir/Set.o.d -o CMakeFiles/fido.dir/Set.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 87%] Building CXX object CMakeFiles/fido.dir/Vector.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/Vector.o -MF CMakeFiles/fido.dir/Vector.o.d -o CMakeFiles/fido.dir/Vector.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 62%] Building CXX object CMakeFiles/fido.dir/BasicGroupBigraph.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/BasicGroupBigraph.o -MF CMakeFiles/fido.dir/BasicGroupBigraph.o.d -o CMakeFiles/fido.dir/BasicGroupBigraph.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/HashTable.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:5,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:8:
../src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
../src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
../src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
../src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
../src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
../src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
../src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
../src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
../src/Scores.h: At global scope:
../src/Scores.h:76:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   76 | struct lexicOrderProb : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:11:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:99:37: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   99 | struct OrderScanMassCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:108:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  108 | struct OrderScanMassLabelCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:119:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  119 | struct OrderScanLabel : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:127:38: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  127 | struct UniqueScanMassCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:133:43: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  133 | struct UniqueScanMassLabelCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:139:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  139 | struct UniqueScanLabel : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 25%] Building CXX object CMakeFiles/fido.dir/GroupPowerBigraph.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/GroupPowerBigraph.o -MF CMakeFiles/fido.dir/GroupPowerBigraph.o.d -o CMakeFiles/fido.dir/GroupPowerBigraph.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/GroupPowerBigraph.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/HashTable.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/GroupPowerBigraph.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/GroupPowerBigraph.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/ReplicateIndexer.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:5,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicGroupBigraph.h:8:
../src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
../src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
../src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
../src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
../src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
../src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
../src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
../src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
../src/Scores.h: At global scope:
../src/Scores.h:76:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   76 | struct lexicOrderProb : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:11:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:99:37: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   99 | struct OrderScanMassCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:108:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  108 | struct OrderScanMassLabelCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:119:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  119 | struct OrderScanLabel : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:127:38: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  127 | struct UniqueScanMassCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:133:43: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  133 | struct UniqueScanMassLabelCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:139:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  139 | struct UniqueScanLabel : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[ 12%] Building CXX object CMakeFiles/fido.dir/BasicBigraph.o
/usr/bin/g++  -I/src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -MD -MT CMakeFiles/fido.dir/BasicBigraph.o -MF CMakeFiles/fido.dir/BasicBigraph.o.d -o CMakeFiles/fido.dir/BasicBigraph.o -c /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:5,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.cpp:4:
../src/Scores.h: In constructor 'ScoreHolder::ScoreHolder()':
../src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
../src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
../src/Scores.h:58:3: warning:   when initialized here [-Wreorder]
   58 |   ScoreHolder() : score(0.0), q(0.0), pep(0.0), p(0.0), label(0), pPSM(NULL) {}
      |   ^~~~~~~~~~~
../src/Scores.h: In constructor 'ScoreHolder::ScoreHolder(double, int, PSMDescription*)':
../src/Scores.h:55:7: warning: 'ScoreHolder::label' will be initialized after [-Wreorder]
   55 |   int label;
      |       ^~~~~
../src/Scores.h:54:19: warning:   'PSMDescription* ScoreHolder::pPSM' [-Wreorder]
   54 |   PSMDescription* pPSM;
      |                   ^~~~
../src/Scores.h:59:3: warning:   when initialized here [-Wreorder]
   59 |   ScoreHolder(const double s, const int l, PSMDescription* psm = NULL) :
      |   ^~~~~~~~~~~
../src/Scores.h: At global scope:
../src/Scores.h:76:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   76 | struct lexicOrderProb : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/string:49,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/fstream:40,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:4:
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:99:37: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   99 | struct OrderScanMassCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                     ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:108:42: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  108 | struct OrderScanMassLabelCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                          ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:119:32: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  119 | struct OrderScanLabel : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:127:38: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  127 | struct UniqueScanMassCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                      ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:133:43: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  133 | struct UniqueScanMassLabelCharge : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                           ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
../src/Scores.h:139:33: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
  139 | struct UniqueScanLabel : public binary_function<ScoreHolder, ScoreHolder, bool> {
      |                                 ^~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.h:144,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/HashTable.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/StringTable.h:9,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:6:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Array.cpp:39:6: warning: 'void Array<T>::add(const T&) [with T = int]' was hidden [-Woverloaded-virtual=]
   39 | void Array<T>::add(const T & element)
      |      ^~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/fido/Vector.h:7,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/fido/BasicBigraph.h:8:
/builddir/build/BUILD/percolator-rel-3-05/src/fido/Set.h:14:8: note:   by 'void Set::add(int)'
   14 |   void add(int el);
      |        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[100%] Linking CXX static library libfido.a
/usr/bin/cmake -P CMakeFiles/fido.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/fido.dir/link.txt --verbose=1
/usr/bin/ar qc libfido.a CMakeFiles/fido.dir/BasicBigraph.o CMakeFiles/fido.dir/BasicGroupBigraph.o CMakeFiles/fido.dir/GroupPowerBigraph.o CMakeFiles/fido.dir/Numerical.o CMakeFiles/fido.dir/Random.o CMakeFiles/fido.dir/Set.o CMakeFiles/fido.dir/Vector.o
/usr/bin/ranlib libfido.a
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
[100%] Built target fido
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/fido'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/fido/CMakeFiles 0
+ popd
~/build/BUILD/percolator-rel-3-05
+ mkdir -p converters
+ pushd converters
~/build/BUILD/percolator-rel-3-05/converters ~/build/BUILD/percolator-rel-3-05
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_VERBOSE_MAKEFILE=TRUE '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc' '-DCMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc' -DCMAKE_BUILD_TYPE:STRING=Release -DPERCOLATOR-CONVERTERS_BINARY_DIR:STATIC=converters -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_SKIP_RPATH:BOOL=YES -DTokyoCabinet_INCLUDE_DIR=/usr/include -DTokyoCabinet_LIBRARY=/usr/lib64/libtokyocabinet.so -DSERIALIZE=TokyoCabinet -DTARGET_ARCH=ppc64le ../src/converters
-- The C compiler identification is GNU 13.0.0
-- The CXX compiler identification is GNU 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- 
-- -------------------------------------------------------------------------------
-- Building PERCOLATOR-CONVERTERS:
-- change a configuration variable with: cmake -D<Variable>=<Value>
-- Indicate the type of XML serialization scheme : 
		  -DSERIALIZE="Boost" or -DSERIALIZE="TokyoCabinet" 
		  or -DSERIALIZE="LevelDB".
		  By setting up the variable SERIALIZE to either Boost 
		  or TokyoCabinet or LevelDB you will choose the serialization 
		  scheme that will be used to build Converters.
		  Boost serialization option will be used as default if no option is given.
-- CMAKE_INSTALL_PREFIX = /usr
-- CMAKE_BUILD_TYPE = Release
-- XML_SUPPORT = ON
-- PERCOLATOR_SOURCE_DIR = /builddir/build/BUILD/percolator-rel-3-05/src/converters/../..
-- CMAKE_PREFIX_PATH = ../
-- TARGET_ARCH = ppc64le
-- TOOL CHAIN FILE = 
-- SERIALIZE = TokyoCabinet
-- PROFILING = 
-- Using Tokyo Cabinet Serialization scheme
-- -------------------------------------------------------------------------------
-- 
-- Architecture: 
-- Checking packages..
-- Found Xerces-C: /usr/lib64/libxerces-c.so
--               : /usr/include
--        Version: 3.2.3
-- Package CodeSynthesis XSD found: /usr/include
-- Found TokyoCabinet: /usr/lib64/libtokyocabinet.so  
-- Package Tokyo Cabinet found : /usr/include
-- Found BZip2: /usr/lib64/libbz2.so  
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found
-- Bzip2 found
-- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found suitable version "1.78.0", minimum required is "1.46.0") found components: filesystem system 
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Generating classes from xsd-schema using CodeSynthesis
-- Generating /builddir/build/BUILD/percolator-rel-3-05/converters/gaml_tandem1.0.cxx;/builddir/build/BUILD/percolator-rel-3-05/converters/gaml_tandem1.0.hxx
-- SQL Lite 3 found: /usr/include
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.13") 
-- ZLIB found: /usr/include, /usr/lib64/libz.so
-- Using FragSpectrumScanDatabaseTokyodb.cpp
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_SKIP_INSTALL_RPATH
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/percolator-rel-3-05/converters
+ xsdcxx cxx-tree --generate-serialization --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://per-colator.com/percolator_in/13=percolatorInNs ../src/xml/percolator_in.xsd
+ xsdcxx cxx-tree --generate-serialization --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://per-colator.com/percolator_out/15=percolatorOutNs ../src/xml/percolator_out.xsd
+ xsdcxx cxx-tree --generate-serialization --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://psidev.info/psi/pi/mzIdentML/1.1=mzIdentML_ns ../src/xml/mzIdentML1.1.0.xsd
+ xsdcxx cxx-tree --generate-serialization --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://www.bioml.com/gaml/=gaml_tandem_ns ../src/xml/gaml_tandem1.0.xsd
+ xsdcxx cxx-tree --generate-serialization --generate-insertion XDR --generate-extraction XDR --root-element-all --namespace-map http://www.thegpm.org/TANDEM/2011.12.01.1=tandem_ns --namespace-map =tandem_ns --namespace-map http://www.bioml.com/gaml/=gaml_tandem_ns ../src/xml/tandem2011.12.01.1.xsd
+ /usr/bin/make -O -j5 V=1 VERBOSE=1
/usr/bin/cmake -S/builddir/build/BUILD/percolator-rel-3-05/src/converters -B/builddir/build/BUILD/percolator-rel-3-05/converters --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/converters//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
/usr/bin/make  -f CMakeFiles/perclibrary_part.dir/build.make CMakeFiles/perclibrary_part.dir/depend
/usr/bin/make  -f CMakeFiles/generate_perc_xsdfiles.dir/build.make CMakeFiles/generate_perc_xsdfiles.dir/depend
/usr/bin/make  -f MSToolkit/RAMP/CMakeFiles/RAMP.dir/build.make MSToolkit/RAMP/CMakeFiles/RAMP.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/generate_perc_xsdfiles.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit/RAMP /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit/RAMP/CMakeFiles/RAMP.dir/DependInfo.cmake --color=
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make[2]: Nothing to be done for 'CMakeFiles/generate_perc_xsdfiles.dir/build'.
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[  3%] Built target generate_perc_xsdfiles
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cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit/RAMP && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__  -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/RAMP/CMakeFiles/RAMP.dir/ramp_base64.cpp.o -MF CMakeFiles/RAMP.dir/ramp_base64.cpp.o.d -o CMakeFiles/RAMP.dir/ramp_base64.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp_base64.cpp
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/usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/perclibrary_part.dir/builddir/build/BUILD/percolator-rel-3-05/src/Enzyme.cpp.o -MF CMakeFiles/perclibrary_part.dir/builddir/build/BUILD/percolator-rel-3-05/src/Enzyme.cpp.o.d -o CMakeFiles/perclibrary_part.dir/builddir/build/BUILD/percolator-rel-3-05/src/Enzyme.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Enzyme.cpp
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[  9%] Building CXX object MSToolkit/RAMP/CMakeFiles/RAMP.dir/ramp.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit/RAMP && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__  -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/RAMP/CMakeFiles/RAMP.dir/ramp.cpp.o -MF CMakeFiles/RAMP.dir/ramp.cpp.o.d -o CMakeFiles/RAMP.dir/ramp.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'RAMPREAL* readPeaks(RAMPFILE*, ramp_fileoffset_t)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1698:13: warning: variable 'err' set but not used [-Wunused-but-set-variable]
 1698 |         int err;
      |             ^~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:34:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'RAMPFILE* rampOpenFile(const char*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:188:16: note: in expansion of macro 'ramp_fgets'
  188 |         (void) ramp_fgets(buf, sizeof(buf) - 1, result);
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'ramp_fileoffset_t getIndexOffset(RAMPFILE*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:118:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  118 | #define ramp_fread(buf,len,handle) fread(buf,1,len,(handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:343:3: note: in expansion of macro 'ramp_fread'
  343 |   ramp_fread(indexOffsetTemp, sizeof(indexOffsetTemp), pFI);
      |   ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'ramp_fileoffset_t* readIndex(RAMPFILE*, ramp_fileoffset_t, int*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:509:18: note: in expansion of macro 'ramp_fgets'
  509 |           (void) ramp_fgets(buf, SIZE_BUF, pFI);
      |                  ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:541:18: note: in expansion of macro 'ramp_fgets'
  541 |           (void) ramp_fgets(buf, SIZE_BUF, pFI);
      |                  ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:575:16: note: in expansion of macro 'ramp_fgets'
  575 |         (void) ramp_fgets(buf, SIZE_BUF, pFI);
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'void readHeader(RAMPFILE*, ramp_fileoffset_t, ScanHeaderStruct*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:967:18: note: in expansion of macro 'ramp_fgets'
  967 |           (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |                  ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:984:18: note: in expansion of macro 'ramp_fgets'
  984 |           (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |                  ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'int readMsLevel(RAMPFILE*, ramp_fileoffset_t)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1056:10: note: in expansion of macro 'ramp_fgets'
 1056 |   (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |          ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1058:12: note: in expansion of macro 'ramp_fgets'
 1058 |     (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |            ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'RAMPREAL* readPeaks(RAMPFILE*, ramp_fileoffset_t)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:118:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  118 | #define ramp_fread(buf,len,handle) fread(buf,1,len,(handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1479:11: note: in expansion of macro 'ramp_fread'
 1479 |           ramp_fread(pData + partial, (int)(peaksLen - partial), pFI);
      |           ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1571:14: note: in expansion of macro 'ramp_fgets'
 1571 |       (void) ramp_fgets(buf, sizeof(buf) - 1, pFI);
      |              ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1573:16: note: in expansion of macro 'ramp_fgets'
 1573 |         (void) ramp_fgets(buf, sizeof(buf) - 1, pFI);
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1626:18: note: in expansion of macro 'ramp_fgets'
 1626 |           (void) ramp_fgets(buf, sizeof(buf) - 1 , pFI);
      |                  ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:118:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  118 | #define ramp_fread(buf,len,handle) fread(buf,1,len,(handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1658:9: note: in expansion of macro 'ramp_fread'
 1658 |         ramp_fread(pData + partial, peaksLen - partial, pFI);
      |         ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'void readMSRun(RAMPFILE*, RunHeaderStruct*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1792:10: note: in expansion of macro 'ramp_fgets'
 1792 |   (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |          ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1795:12: note: in expansion of macro 'ramp_fgets'
 1795 |     (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |            ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1816:12: note: in expansion of macro 'ramp_fgets'
 1816 |     (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |            ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'InstrumentStruct* getInstrumentStruct(RAMPFILE*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1926:10: note: in expansion of macro 'ramp_fgets'
 1926 |   (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |          ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1933:13: note: in expansion of macro 'ramp_fgets'
 1933 |      (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |             ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:119:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  119 | #define ramp_fgets(buf,len,handle) fgets(buf, len, (handle)->fileHandle)
      |                                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1989:14: note: in expansion of macro 'ramp_fgets'
 1989 |       (void) ramp_fgets(stringBuf, SIZE_BUF, pFI);
      |              ^~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.h:123:
In function '*strchr',
    inlined from 'readPeaks(RAMPFILE*, long)' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1599:35:
/usr/include/string.h:241:27: warning: 'strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In function 'readPeaks(RAMPFILE*, long)':
cc1plus: note: source object is likely at address zero
In function '*strchr',
    inlined from 'readPeaks(RAMPFILE*, long)' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1613:35:
/usr/include/string.h:241:27: warning: 'strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~
In function 'readPeaks(RAMPFILE*, long)':
cc1plus: note: source object is likely at address zero
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp: In function 'rampSelfTest(char*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:2050:12: warning: 'strncpy' specified bound 256 equals destination size [-Wstringop-truncation]
 2050 |     strncpy(buf, filename, sizeof(buf));
      |            ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:2054:12: warning: 'strncpy' specified bound 256 equals destination size [-Wstringop-truncation]
 2054 |     strncpy(buf, filename, sizeof(buf));
      |            ^
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/usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/perclibrary_part.dir/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx.o -MF CMakeFiles/perclibrary_part.dir/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx.o.d -o CMakeFiles/perclibrary_part.dir/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx
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/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx: In constructor 'parser_impl::parser_impl()':
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:106:33: warning: 'parser_impl::gp_' will be initialized after [-Wreorder]
  106 |   std::auto_ptr<XMLGrammarPool> gp_; // (new XMLGrammarPoolImpl (mm));
      |                                 ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:102:22: warning:   'xercesc_3_2::DOMImplementation& parser_impl::dom_impl_' [-Wreorder]
  102 |   DOMImplementation& dom_impl_;
      |                      ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:144:1: warning:   when initialized here [-Wreorder]
  144 | parser_impl::parser_impl() : clean_(true),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx: In member function 'xsd::cxx::xml::dom::auto_ptr<xercesc_3_2::DOMDocument> parser_impl::start(std::istream&, const std::string&, bool, std::string, std::string, std::string, std::string, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:178:14: warning: unused variable 'n' [-Wunused-variable]
  178 |       size_t n(s.size());
      |              ^
/builddir/build/BUILD/percolator-rel-3-05/src/parser.cxx:170:9: warning: unused variable 'i' [-Wunused-variable]
  170 |     int i(1);
      |         ^
/usr/bin/make  -f MSToolkit/CMakeFiles/MSToolkit.dir/build.make MSToolkit/CMakeFiles/MSToolkit.dir/depend
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cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/LazyMatrix.cpp.o -MF CMakeFiles/MSToolkit.dir/LazyMatrix.cpp.o.d -o CMakeFiles/MSToolkit.dir/LazyMatrix.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In function 'LazyMatrix* flip_lazy_matrix(LazyMatrix&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:21:30: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
   21 |         for ( uint j = 0 ; j < lm.rows() ; j++ ) {
      |                            ~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:22:38: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
   22 |                 for ( uint i = 0 ; i < lm.cols() ; i++ ) {
      |                                    ~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In copy constructor 'LazyMatrix::LazyMatrix(const self&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:56:6: warning: value computed is not used [-Wunused-value]
   56 |      *data_copies++;
      |      ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::copy_m_flip(const self&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:67:28: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'const int' [-Wsign-compare]
   67 |       for ( uint i = 0 ; i < x.nrows ; i++ ) {
      |                          ~~^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::to_full_data(bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:101:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<float>*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  101 |           for ( int i = 0 ; i < m.size() ; i++ ) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::to_full_data(value_type, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:115:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<float>*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  115 |           for ( int i = 0 ; i < m.size() ; i++ ) {
      |                             ~~^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::_get_row_retain(std::vector<float>&, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:179:43: warning: variable 'b' set but not used [-Wunused-but-set-variable]
  179 |              std::vector<float>::iterator b = this->m[i]->begin();
      |                                           ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::add_val(float)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:313:31: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  313 |          for ( uint i = 0 ; i < nrows ; i++ ) {
      |                             ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::mult_val(float)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:322:31: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  322 |          for ( uint i = 0 ; i < nrows ; i++ ) {
      |                             ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::div_val(float)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:331:31: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  331 |          for ( uint i = 0 ; i < nrows ; i++ ) {
      |                             ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::set_min_val(float)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:339:26: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  339 |     for ( uint i = 0 ; i < nrows ; i++ ) {
      |                        ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::set_max_val(float)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:351:26: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  351 |     for ( uint i = 0 ; i < nrows ; i++ ) {
      |                        ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::column_shift(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:369:23: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  369 |   for ( uint i = 0 ;i < rows() ; i++ ) {
      |                     ~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:370:26: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  370 |     for ( uint j = 0 ; j < cols() ; j++ ) {
      |                        ~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:373:21: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  373 |       if ( dest_idx >= cols() ) break;
      |            ~~~~~~~~~^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp: In member function 'void LazyMatrix::linear_shift(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:389:25: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  389 |     for ( uint i = 0; i < shift ; i++ ) {
      |                       ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:393:29: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  393 |     for ( uint i = shift; i < nrows; i++ ) {
      |                           ~~^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/LazyMatrix.cpp:412:39: warning: comparison of integer expressions of different signedness: 'uint' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  412 |     for ( uint i = nrows - offset ; i < nrows; i++ ) {
      |                                     ~~^~~~~~~
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cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/MSObject.cpp.o -MF CMakeFiles/MSToolkit.dir/MSObject.cpp.o.d -o CMakeFiles/MSToolkit.dir/MSObject.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSObject.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSObject.cpp: In copy constructor 'MSObject::MSObject(const MSObject&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSObject.cpp:21:12: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Spectrum>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   21 |   for(i=0;i<m.vSpectrum->size();i++){
      |           ~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSObject.cpp: In member function 'MSObject& MSObject::operator=(const MSObject&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSObject.cpp:36:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Spectrum>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   36 |     for(i=0;i<m.vSpectrum->size();i++){
      |             ~^~~~~~~~~~~~~~~~~~~~
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[ 38%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/MSReader.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/MSReader.cpp.o -MF CMakeFiles/MSToolkit.dir/MSReader.cpp.o.d -o CMakeFiles/MSToolkit.dir/MSReader.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'void MSReader::writeSqlite(const char*, MSObject&, char*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:634:34: warning: the address of 'MSHeader::header' will never be NULL [-Waddress]
  634 |       if(m.getHeader().header[i] != 0)
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.h:4,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.h:4,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSToolkitTypes.h:54:14: note: 'MSHeader::header' declared here
   54 |         char header[16][128];
      |              ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'void MSReader::appendFile(Spectrum&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:916:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  916 |           for(int i=0; i<chgs.size(); i++)
      |                        ~^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:750:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
  750 |   int err;
      |       ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:756:9: warning: variable 'sizeM' set but not used [-Wunused-but-set-variable]
  756 |   uLong sizeM;
      |         ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:757:9: warning: variable 'sizeI' set but not used [-Wunused-but-set-variable]
  757 |   uLong sizeI;
      |         ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'bool MSReader::executeSqlStmt(Spectrum&, char*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1187:7: warning: unused variable 'charge' [-Wunused-variable]
 1187 |   int charge=-1;
      |       ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'void MSReader::writeCompressSpec(FILE*, Spectrum&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1610:13: warning: variable 'err' set but not used [-Wunused-but-set-variable]
 1610 |         int err;
      |             ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1616:15: warning: variable 'sizeM' set but not used [-Wunused-but-set-variable]
 1616 |         uLong sizeM;
      |               ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1617:15: warning: variable 'sizeI' set but not used [-Wunused-but-set-variable]
 1617 |         uLong sizeI;
      |               ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'int MSReader::openFile(const char*, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:101:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  101 |       fread(&iFType,4,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:102:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  102 |       fread(&iVersion,4,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:103:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  103 |                         fread(&header,sizeof(MSHeader),1,fileIn);
      |                         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'bool MSReader::readFile(const char*, bool, Spectrum&, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:189:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  189 |                 fread(&i,4,1,fileIn);
      |                 ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:191:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  191 |                 fread(&i,4,1,fileIn);
      |                 ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:207:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  207 |       fread(&z.z,4,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:208:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  208 |       fread(&z.mz,8,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:213:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  213 |       fread(&ez.z,4,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:214:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  214 |       fread(&ez.mh,8,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:215:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  215 |       fread(&ez.pRTime,4,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:216:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  216 |       fread(&ez.pArea,4,1,fileIn);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:239:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  239 |               fread(&p.mz,8,1,fileIn);
      |               ~~~~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:240:20: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  240 |               fread(&p.intensity,4,1,fileIn);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:280:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  280 |               fgets(tstr,256,fileIn);
      |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:285:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  285 |               fgets(tstr,256,fileIn);
      |         make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
      ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:297:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  297 |         fgets(tstr,256,fileIn);
      |         ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:347:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  347 |                 fgets(tstr,256,fileIn);
      |                 ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:374:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  374 |                 fgets(tstr,256,fileIn);
      |                 ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:377:20: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  377 |               fgets(tstr,256,fileIn);
      |               ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:400:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  400 |                   fgets(tstr,256,fileIn);
      |                   ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:405:21: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result]
  405 |               fscanf(fileIn,"%lf %f\n",&p.mz,&p.intensity);
      |               ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:411:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
  411 |         fgets(tstr,256,fileIn);
      |         ~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'void MSReader::readCompressSpec(FILE*, MSScanInfo&, Spectrum&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1669:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1669 |         fread(&i,4,1,fileIn);
      |         ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1671:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1671 |         fread(&i,4,1,fileIn);
      |         ~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1677:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1677 |         fread(compr,mzLen,1,fileIn);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1684:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1684 |         fread(compr,intensityLen,1,fileIn);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'void MSReader::readSpecHeader(FILE*, MSScanInfo&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1882:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1882 |   fread(&ms.scanNumber[0],4,1,fileIn);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1884:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1884 |   fread(&ms.scanNumber[1],4,1,fileIn);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1885:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1885 |   fread(&ms.mz,8,1,fileIn);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1886:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1886 |   fread(&ms.rTime,4,1,fileIn);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1889:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1889 |     fread(&ms.BPI,4,1,fileIn);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1890:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1890 |     fread(&ms.BPM,8,1,fileIn);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1891:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1891 |     fread(&ms.convA,8,1,fileIn);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1892:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1892 |     fread(&ms.convB,8,1,fileIn);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1893:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1893 |     fread(&ms.TIC,8,1,fileIn);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1894:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1894 |     fread(&ms.IIT,4,1,fileIn);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1897:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1897 |   fread(&ms.numZStates,4,1,fileIn);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1899:24: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1899 |   if(iVersion>=3) fread(&ms.numEZStates,4,1,fileIn);
      |                   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1902:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1902 |   fread(&ms.numDataPoints,4,1,fileIn);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'MSFileFormat MSReader::checkFileFormat(const char*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1952:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1952 |   fread(&i,4,1,f);
      |   ~~~~~^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:1953:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result]
 1953 |   fread(&iVersion,4,1,f);
      |   ~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/13/cstdio:42,
                 from /usr/include/c++/13/parallel/compiletime_settings.h:33,
                 from /usr/include/c++/13/parallel/parallel.h:37,
                 from /usr/include/c++/13/parallel/base.h:40,
                 from /usr/include/c++/13/parallel/algobase.h:40,
                 from /usr/include/c++/13/bits/stl_algobase.h:2229,
                 from /usr/include/c++/13/vector:62,
                 from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.h:5:
In function '*__sprintfieee128',
    inlined from 'MSReader::appendFile(Spectrum&)' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:869:11:
/usr/include/bits/stdio2.h:30:34: warning: 'lastScanID' may be used uninitialized [-Wmaybe-uninitialized]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp: In member function 'MSReader::appendFile(Spectrum&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSReader.cpp:853:7: note: 'lastScanID' was declared here
  853 |   int lastScanID;
      |       ^~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 40%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/MSSingleScan.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/MSSingleScan.cpp.o -MF CMakeFiles/MSToolkit.dir/MSSingleScan.cpp.o.d -o CMakeFiles/MSToolkit.dir/MSSingleScan.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSSingleScan.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 43%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/MSTDemo.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/MSTDemo.cpp.o -MF CMakeFiles/MSToolkit.dir/MSTDemo.cpp.o.d -o CMakeFiles/MSToolkit.dir/MSTDemo.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSTDemo.cpp
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cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/MSTAllRT.cpp.o -MF CMakeFiles/MSToolkit.dir/MSTAllRT.cpp.o.d -o CMakeFiles/MSToolkit.dir/MSTAllRT.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSTAllRT.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSTAllRT.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSTAllRT.cpp:51:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   51 |   for ( int i = 0 ; i < rts.size() ; i++ ) {
      |                     ~~^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSTAllRT.cpp:26:22: warning: variable 'ff' set but not used [-Wunused-but-set-variable]
   26 |         MSFileFormat ff;
      |                      ^~
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[ 47%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/Spectrum.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/Spectrum.cpp.o -MF CMakeFiles/MSToolkit.dir/Spectrum.cpp.o.d -o CMakeFiles/MSToolkit.dir/Spectrum.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp: In member function 'Spectrum& Spectrum::operator=(const Spectrum&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:81:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Peak_T>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   81 |     for(i=0;i<s.vPeaks->size();i++){
      |             ~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:85:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<EZState>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   85 |     for(i=0;i<s.vEZ->size();i++){
      |             ~^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:89:14: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<ZState>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   89 |     for(i=0;i<s.vZ->size();i++){
      |             ~^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp: In member function 'bool Spectrum::getRawFilter(char*, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:282:8: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  282 |   if(sz<strlen(rawFilter)) {
      |      ~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp: In member function 'float Spectrum::getTotalIntensity()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:389:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Peak_T>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  389 |   for(int i=0; i<vPeaks->size(); i++)
      |                ~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp: In member function 'void Spectrum::setPeaks(std::vector<Peak_T>)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:428:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Peak_T>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  428 |   for(int i=0; i<peaks.size(); i++)
      |                ~^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp: In member function 'void Spectrum::printMe()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/Spectrum.cpp:453:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Peak_T>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  453 |   for(int i=0; i<vPeaks->size(); i++)
      |                ~^~~~~~~~~~~~~~~
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cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/MSWarper.cpp.o -MF CMakeFiles/MSToolkit.dir/MSWarper.cpp.o.d -o CMakeFiles/MSToolkit.dir/MSWarper.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSWarper.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSWarper.cpp:17:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'std::pair<float, float> msmat::get_transition_by_idx() const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:517:3: warning: no return statement in function returning non-void [-Wreturn-type]
  517 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'int msmat::get_idx_by_transition(std::pair<float, float>) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:519:3: warning: no return statement in function returning non-void [-Wreturn-type]
  519 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_scans::msmat_scans()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:600:15: warning: unused variable 'a' [-Wunused-variable]
  600 |           int a = 3;
      |               ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_chroms::msmat_chroms()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:703:9: warning: unused variable 'a' [-Wunused-variable]
  703 |     int a  = 3;
      |         ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSWarper.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/MSWarper.cpp:87:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<const char*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   87 |   for ( int f_idx = 0; f_idx < ms1_file_names.size() ; f_idx++ ) {
      |                        ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:812:12: warning: 'int test_msmat_time_interp(msmat*)' declared 'static' but never defined [-Wunused-function]
  812 | static int test_msmat_time_interp( msmat * msmat_f );
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:813:12: warning: 'int test_msmat_sg_test(msmat*)' declared 'static' but never defined [-Wunused-function]
  813 | static int test_msmat_sg_test( msmat * msmat_fh);
      |            ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:814:12: warning: 'int test_msmat_output(msmat*, char*)' declared 'static' but never defined [-Wunused-function]
  814 | static int test_msmat_output ( msmat * msmat_fh, char * out_fname);
      |            ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:815:16: warning: 'msmat* test_msmat(int, char**)' declared 'static' but never defined [-Wunused-function]
  815 | static msmat * test_msmat(int argc, char ** argv);
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:818:13: warning: 'void output_bp_chrom(msmat&, char*)' declared 'static' but never defined [-Wunused-function]
  818 | static void output_bp_chrom( msmat & m , char * fname);
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:819:17: warning: 'msmat* msmat_from_fh(FILE*, sparse_level)' declared 'static' but never defined [-Wunused-function]
  819 | static msmat *  msmat_from_fh ( FILE * msmat_file, sparse_level s = LM_FULL_DATA );
      |                 ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:820:16: warning: 'msmat* msmat_from_thevoid(const std::vector<float>&, const std::vector<float>&, std::vector<std::vector<float> >&, bool)' declared 'static' but never defined [-Wunused-function]
  820 | static msmat * msmat_from_thevoid ( const std::vector<float> & mzs, const std::vector<float> & rts, std::vector < std::vector< float > > & chroms , bool as_scans = true );
      |                ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:48:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_base.H:69:21: warning: 'valid_fields' defined but not used [-Wunused-variable]
   69 | const static char * valid_fields[] = {
      |                     ^~~~~~~~~~~~
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/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/tandem2011.12.01.1.cxx.o -MF CMakeFiles/converters.dir/tandem2011.12.01.1.cxx.o.d -o CMakeFiles/converters.dir/tandem2011.12.01.1.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/converters/tandem2011.12.01.1.cxx
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[ 52%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/msmat.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/msmat.cpp.o -MF CMakeFiles/MSToolkit.dir/msmat.cpp.o.d -o CMakeFiles/MSToolkit.dir/msmat.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:17:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'std::pair<float, float> msmat::get_transition_by_idx() const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:517:3: warning: no return statement in function returning non-void [-Wreturn-type]
  517 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'int msmat::get_idx_by_transition(std::pair<float, float>) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:519:3: warning: no return statement in function returning non-void [-Wreturn-type]
  519 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_scans::msmat_scans()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:600:15: warning: unused variable 'a' [-Wunused-variable]
  600 |           int a = 3;
      |               ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_chroms::msmat_chroms()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:703:9: warning: unused variable 'a' [-Wunused-variable]
  703 |     int a  = 3;
      |         ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'std::vector<transition_info> transition_manager::get_trans_by_precursor(float)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:37:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   37 |        for ( int i = 0 ; i < precursors.size() ; i++ )
      |                          ~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'std::vector<transition_info> transition_manager::get_trans_by_precursor_idx(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:48:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<transition_info>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   48 |         for ( int i = 0 ; i < ti.size() ; i++ ) {
      |                           ~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In constructor 'transition_manager::transition_manager(std::vector<transition_info>)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:57:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<transition_info>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   57 |       for ( int  i = 0 ; i < transitions.size() ; i++ ) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::init_transitions_from_labels()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:86:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   86 |    for ( int i = 0 ; i < labels.size() ; i++ ) {
      |                      ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::tabular_input(std::ifstream&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:119:36: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  119 |      for ( int mz_idx = 0 ; mz_idx < this->get_num_mzs() ; mz_idx++ ) {
      |                             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:120:38: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  120 |          for ( int c_idx = 0 ; c_idx < this->get_num_rts() ; c_idx++ ) {
      |                                ~~~~~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:117:10: warning: unused variable 'num_chroms' [-Wunused-variable]
  117 |      int num_chroms = this->get_num_mzs();
      |          ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:118:10: warning: unused variable 'num_rts' [-Wunused-variable]
  118 |      int num_rts = this->get_num_rts();
      |          ^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::retain_dist_set(int, std::vector<int>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:228:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  228 |     for ( int i = 0 ; i < this->get_num_rts() ; i++ ) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::retain_chrom_set(int, std::vector<std::pair<int, int> >&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:247:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  247 |     for ( int i = 1 ; i < retain_range.size() ; i++ ) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:255:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  255 |     for ( int i = 0 ; i < delete_range.size() ; i++ ) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:237:9: warning: unused variable 'set_idx' [-Wunused-variable]
  237 |     int set_idx = 0;
      |         ^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::retain_chrom(int, int, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:266:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  266 |   for ( int i = stop_scan_idx + 1 ; i < get_num_rts() ; i++ ) {
      |                                     ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'int msmat::check_size_from_position() const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:283:30: warning: comparison of integer expressions of different signedness: 'off64_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  283 |   if ( ( end_pos - cur_pos ) == get_num_mzs() * get_num_rts() * sizeof(float) ) {
      |        ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'int msmat::rt_to_rtidx(float) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:417:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  417 |      if ( iter_delt == rts.size() - 1 )
      |           ~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::calc_bp_chrom()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:680:28: warning: variable 'scan_length' set but not used [-Wunused-but-set-variable]
  680 |   int scan_idx, num_scans, scan_length;
      |                            ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::time_interpolate(double, msmat&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1068:14: warning: variable 'dim' set but not used [-Wunused-but-set-variable]
 1068 |   matrix_dim dim = get_data_dim();
      |              ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'double msmat::get_median() const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1278:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1278 |   for ( int i = 0 ; i < this->get_num_rows() ; i++ ) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1279:25: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1279 |     for ( int j = 0 ; j < this->get_num_cols() ; j++ ) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'double msmat::get_avg(int) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1294:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1294 |     if ( i < 0 || i >= get_num_rts()  ) {
      |                   ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'double msmat::calc_twomat_num(const msmat&, double, double, int) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1325:72: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1325 |                                      for ( int self_idx = 0 ; self_idx < get_num_rts() ; self_idx++ ) {
      |                                                               ~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1327:72: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1327 |                                        if ( other_idx < 0 || other_idx >= other.get_num_rts() ) {
      |                                                              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'double msmat::calc_mat_denom(double, int) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1350:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1350 |     if ( i < 0 || i >= get_num_rts() ) {
      |                   ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'double msmat::correlation_w_shift(const msmat&, int) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1368:17: warning: unused variable 'self' [-Wunused-variable]
 1368 |   const msmat & self = *this;
      |                 ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'msmat_chroms* msmat_chroms::extract_mzidx_range(int, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1422:9: warning: unused variable 'foo' [-Wunused-variable]
 1422 |     int foo = 5;
      |         ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'virtual void msmat_scans::get_chrom(int, std::vector<float>&) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1498:11: warning: unused variable 'volatile_this' [-Wunused-variable]
 1498 |   msmat * volatile_this;
      |           ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::scan_scramble()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1555:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1555 |   for ( int i = 0 ; i < get_num_rts() ; i++ ) {
      |                     ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1561:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<int, int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1561 |   for ( int i = 0 ; i < scram_cmds.size() ; i++ ) {
      |                     ~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In function 'msmat* test_msmat(int, char**)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1605:19: warning: variable 'ti_file' set but not used [-Wunused-but-set-variable]
 1605 |   FILE * o_file, *ti_file, *sg_file;
      |                   ^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1605:29: warning: variable 'sg_file' set but not used [-Wunused-but-set-variable]
 1605 |   FILE * o_file, *ti_file, *sg_file;
      |                             ^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In function 'msmat* msmat_from_thevoid(const std::vector<float>&, const std::vector<float>&, std::vector<std::vector<float> >&, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1746:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<float> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1746 |   for ( int i = 0 ; i < chroms.size() ; i++ ){
      |                     ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1762:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<float> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1762 |   for ( int i = 0 ; i < chroms.size() ; i++ ){
      |                     ~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::decimate_mzs_by_avg(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1828:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1828 |     new_cnt < mzs.size() ;
      |     ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::decimate_rts_by_avg(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1858:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1858 |     new_cnt < rts.size() ;
      |     ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::decimate_mzs_by_sample(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1880:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1880 |     new_cnt < mzs.size() ;
      |     ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::decimate_rts_by_sample(int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1898:13: warning: comparisomake[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
n of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1898 |     new_cnt < rts.size() ;
      |     ~~~~~~~~^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'bool msmat::equals_data(const msmat&, double) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1921:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1921 |   for ( int i = 0 ; i < get_num_rows() ; i++ ) {
      |                     ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'double msmat::sum_abs_diffs(const msmat&) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1944:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1944 |   for ( int i = 0 ; i < get_num_rows() ; i++ ) {
      |                     ~~^~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1941:10: warning: unused variable 'nrows' [-Wunused-variable]
 1941 |   size_t nrows = get_num_rows();
      |          ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void msmat::tabular_output(std::ostream&, int, int, int, int, bool, char)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2004:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2004 |     for ( int i = 0 ; i < rts_slice.size() - 1 ; i++ ) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2010:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2010 |   for ( int i = 0 ; i < mzs_slice.size() ; i++ ) {
      |                     ~~^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2019:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2019 |     for ( int j = 0 ; j < out_chrom.size() - 1 ; j++ ) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1990:13: warning: unused variable 'num_mzs' [-Wunused-variable]
 1990 |   const int num_mzs = get_num_mzs();
      |             ^~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'virtual void msmat_scans::get_scan_interp(float, std::vector<float>&) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2071:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2071 |   for ( int i = 0 ; i < s1.size() ;i++ ) {
      |                     ~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'virtual void msmat_chroms::get_scan_interp(float, std::vector<float>&) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2095:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2095 |   for ( int i = 0 ; i < s1.size() ;i++ ) {
      |                     ~~^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp: In member function 'void ttest_score_matrix::unmask_search(msmat::mz_type, msmat::rt_type, msmat::rt_type)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2109:7: warning: unused variable 'start_rt_idx' [-Wunused-variable]
 2109 |   int start_rt_idx = this->rt_to_rtidx(start_rt);
      |       ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:2110:7: warning: unused variable 'stop_rt_idx' [-Wunused-variable]
 2110 |   int stop_rt_idx = this->rt_to_rtidx(stop_rt);
      |       ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:812:12: warning: 'int test_msmat_time_interp(msmat*)' declared 'static' but never defined [-Wunused-function]
  812 | static int test_msmat_time_interp( msmat * msmat_f );
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:813:12: warning: 'int test_msmat_sg_test(msmat*)' declared 'static' but never defined [-Wunused-function]
  813 | static int test_msmat_sg_test( msmat * msmat_fh);
      |            ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:814:12: warning: 'int test_msmat_output(msmat*, char*)' declared 'static' but never defined [-Wunused-function]
  814 | static int test_msmat_output ( msmat * msmat_fh, char * out_fname);
      |            ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1740:9: warning: 'msmat* msmat_from_thevoid(const std::vector<float>&, const std::vector<float>&, std::vector<std::vector<float> >&, bool)' defined but not used [-Wunused-function]
 1740 | msmat * msmat_from_thevoid
      |         ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1713:6: warning: 'void output_bp_chrom(msmat&, char*)' defined but not used [-Wunused-function]
 1713 | void output_bp_chrom( msmat & m, char * fname  ) {
      |      ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.cpp:1582:9: warning: 'msmat* test_msmat(int, char**)' defined but not used [-Wunused-function]
 1582 | msmat * test_msmat ( int argc , char ** argv ) {
      |         ^~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:48:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_base.H:69:21: warning: 'valid_fields' defined but not used [-Wunused-variable]
   69 | const static char * valid_fields[] = {
      |                     ^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 63%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/msmat_base.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/msmat_base.cpp.o -MF CMakeFiles/MSToolkit.dir/msmat_base.cpp.o.d -o CMakeFiles/MSToolkit.dir/msmat_base.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_base.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_base.cpp:16:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_base.H:69:21: warning: 'valid_fields' defined but not used [-Wunused-variable]
   69 | const static char * valid_fields[] = {
      |                     ^~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 60%] Building CXX object CMakeFiles/converters.dir/Reader.cpp.o
/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/Reader.cpp.o -MF CMakeFiles/converters.dir/Reader.cpp.o.d -o CMakeFiles/converters.dir/Reader.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/Reader.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Reader.cpp: In member function 'Reader::translateFileToXML(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, bool, unsigned int, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Reader.cpp:327:32: warning: 'tcd' may be used uninitialized [-Wmaybe-uninitialized]
  327 |         tmpDirs[lineNumber_par]=tcd;
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Reader.cpp:302:22: note: 'tcd' was declared here
  302 |               char * tcd;
      |                      ^~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 49%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/crawutils.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/crawutils.cpp.o -MF CMakeFiles/MSToolkit.dir/crawutils.cpp.o.d -o CMakeFiles/MSToolkit.dir/crawutils.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp: In function 'void crawutils::rankties(std::vector<float>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:261:9: warning: unused variable 'start_idx' [-Wunused-variable]
  261 |     int start_idx = -1;
      |         ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:262:9: warning: unused variable 'stop_idx' [-Wunused-variable]
  262 |     int stop_idx = -1;
      |         ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp: In function 'void crawutils::rank_by_pos_ties(const std::vector<std::pair<float, int> >&, std::vector<float>&, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:354:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<float, int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  354 |       if ( ( i != (sorted_by_i.size() ) ) && ( sorted_by_i[i].first == last_val) ) {
      |              ~~^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:346:9: warning: unused variable 'last_rank' [-Wunused-variable]
  346 |     int last_rank = -1;
      |         ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp: In function 'int crawutils::idx_of_centroid(const std::vector<float>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:944:32: warning: comparison of integer expressions of different signedness: 'std::vector<float>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  944 |     if (cumulative_area.size() == idx)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp: In function 'int crawutils::idx_of_centroid(const std::vector<float>&, const std::vector<float>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:990:32: warning: comparison of integer expressions of different signedness: 'std::vector<float>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  990 |     if (cumulative_area.size() == idx)
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp: In function 'int crawutils::tryptic_digester_proto(std::string, std::vector<std::__cxx11::basic_string<char> >&, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:1121:10: warning: unused variable 'last_tryp' [-Wunused-variable]
 1121 |     bool last_tryp = false;
      |          ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp: In function 'std::vector<std::pair<std::set<int>, std::set<int> > > crawutils::permute_two_groups(IdxGroupType, IdxGroupType)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/crawutils.cpp:1214:8: warning: unused variable 'g2_len' [-Wunused-variable]
 1214 |    int g2_len = g2.size();
      |        ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 65%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/msmat_header_parser.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/msmat_header_parser.cpp.o -MF CMakeFiles/MSToolkit.dir/msmat_header_parser.cpp.o.d -o CMakeFiles/MSToolkit.dir/msmat_header_parser.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:20:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'std::pair<float, float> msmat::get_transition_by_idx() const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:517:3: warning: no return statement in function returning non-void [-Wreturn-type]
  517 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'int msmat::get_idx_by_transition(std::pair<float, float>) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:519:3: warning: no return statement in function returning non-void [-Wreturn-type]
  519 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_scans::msmat_scans()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:600:15: warning: unused variable 'a' [-Wunused-variable]
  600 |           int a = 3;
      |               ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_chroms::msmat_chroms()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:703:9: warning: unused variable 'a' [-Wunused-variable]
  703 |     int a  = 3;
      |         ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp: In member function 'int msmat_header_parser::read_header(msmat*, FILE*, bool, int*)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:92:14: warning: unused variable 'should_be_semi' [-Wunused-variable]
   92 |         char should_be_semi = (char)fgetc(header_fh);
      |              ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp: In member function 'void msmat_header_parser::load_strmap_from_str(std::map<std::__cxx11::basic_string<char>, float>&, const char*, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:343:22: warning: unused variable 'key_fields_len' [-Wunused-variable]
  343 |   int c1_loc, c2_loc,key_fields_len, key_last_loc, key_data_len, key_len, val_len;
      |                      ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:343:38: warning: unused variable 'key_last_loc' [-Wunused-variable]
  343 |   int c1_loc, c2_loc,key_fields_len, key_last_loc, key_data_len, key_len, val_len;
      |                                      ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:343:52: warning: unused variable 'key_data_len' [-Wunused-variable]
  343 |   int c1_loc, c2_loc,key_fields_len, key_last_loc, key_data_len, key_len, val_len;
      |                                                    ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:344:8: warning: unused variable 'key_len_data' [-Wunused-variable]
  344 |   char key_len_data[128], val_len_data[128];
      |        ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:344:27: warning: unused variable 'val_len_data' [-Wunused-variable]
  344 |   char key_len_data[128], val_len_data[128];
      |                           ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:367:7: warning: unused variable 'key_data_idx' [-Wunused-variable]
  367 |   int key_data_idx;
      |       ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp: In member function 'void msmat_header_parser::write_header_field_string_list(FILE*, const char*, const std::vector<std::__cxx11::basic_string<char> >&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:431:9: warning: unused variable 'num_elements' [-Wunused-variable]
  431 |     int num_elements = s.size();
      |         ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:812:12: warning: 'int test_msmat_time_interp(msmat*)' declared 'static' but never defined [-Wunused-function]
  812 | static int test_msmat_time_interp( msmat * msmat_f );
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:813:12: warning: 'int test_msmat_sg_test(msmat*)' declared 'static' but never defined [-Wunused-function]
  813 | static int test_msmat_sg_test( msmat * msmat_fh);
      |            ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:814:12: warning: 'int test_msmat_output(msmat*, char*)' declared 'static' but never defined [-Wunused-function]
  814 | static int test_msmat_output ( msmat * msmat_fh, char * out_fname);
      |            ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:815:16: warning: 'msmat* test_msmat(int, char**)' declared 'static' but never defined [-Wunused-function]
  815 | static msmat * test_msmat(int argc, char ** argv);
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:818:13: warning: 'void output_bp_chrom(msmat&, char*)' declared 'static' but never defined [-Wunused-function]
  818 | static void output_bp_chrom( msmat & m , char * fname);
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:819:17: warning: 'msmat* msmat_from_fh(FILE*, sparse_level)' declared 'static' but never defined [-Wunused-function]
  819 | static msmat *  msmat_from_fh ( FILE * msmat_file, sparse_level s = LM_FULL_DATA );
      |                 ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:820:16: warning: 'msmat* msmat_from_thevoid(const std::vector<float>&, const std::vector<float>&, std::vector<std::vector<float> >&, bool)' declared 'static' but never defined [-Wunused-function]
  820 | static msmat * msmat_from_thevoid ( const std::vector<float> & mzs, const std::vector<float> & rts, std::vector < std::vector< float > > & chroms , bool as_scans = true );
      |                ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp: In member function 'msmat_header_parser::load_map_from_str(std::map<float, float, std::less<float>, std::allocator<std::pair<float const, float> > >&, char const*, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:314:10: warning: 'operator delete(void*, unsigned long)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
  314 |   delete k;
      |          ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:306:48: note: returned from 'operator new[](unsigned long)'
  306 |   flt_map_type * k = new flt_map_type[num_items];
      |                                                ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:315:10: warning: 'operator delete(void*, unsigned long)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
  315 |   delete v;
      |          ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:307:48: note: returned from 'operator new[](unsigned long)'
  307 |   flt_map_type * v = new flt_map_type[num_items];
      |                                                ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp: In member function 'msmat_header_parser::load_strmap_from_str(std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::almake[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
locator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, float> > >&, char const*, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:394:10: warning: 'operator delete(void*, unsigned long)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete]
  394 |   delete values;
      |          ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_header_parser.cpp:389:37: note: returned from 'operator new[](unsigned long)'
  389 |   float * values = new float[val_len];
      |                                     ^
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 61%] Building CXX object CMakeFiles/converters.dir/SqtReader.cpp.o
/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/SqtReader.cpp.o -MF CMakeFiles/converters.dir/SqtReader.cpp.o.d -o CMakeFiles/converters.dir/SqtReader.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/SqtReader.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
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[ 69%] Building CXX object MSToolkit/CMakeFiles/MSToolkit.dir/msmat_test.cpp.o
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/g++ -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT MSToolkit/CMakeFiles/MSToolkit.dir/msmat_test.cpp.o -MF CMakeFiles/MSToolkit.dir/msmat_test.cpp.o.d -o CMakeFiles/MSToolkit.dir/msmat_test.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_test.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_test.cpp:4:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'std::pair<float, float> msmat::get_transition_by_idx() const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:517:3: warning: no return statement in function returning non-void [-Wreturn-type]
  517 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In member function 'int msmat::get_idx_by_transition(std::pair<float, float>) const':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:519:3: warning: no return statement in function returning non-void [-Wreturn-type]
  519 |   }
      |   ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_scans::msmat_scans()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:600:15: warning: unused variable 'a' [-Wunused-variable]
  600 |           int a = 3;
      |               ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: In constructor 'msmat_chroms::msmat_chroms()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:703:9: warning: unused variable 'a' [-Wunused-variable]
  703 |     int a  = 3;
      |         ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_test.cpp: In function 'int main(int, char**)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_test.cpp:13:12: warning: unused variable 'm' [-Wunused-variable]
   13 |   msmat  * m;
      |            ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H: At global scope:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:812:12: warning: 'int test_msmat_time_interp(msmat*)' declared 'static' but never defined [-Wunused-function]
  812 | static int test_msmat_time_interp( msmat * msmat_f );
      |            ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:813:12: warning: 'int test_msmat_sg_test(msmat*)' declared 'static' but never defined [-Wunused-function]
  813 | static int test_msmat_sg_test( msmat * msmat_fh);
      |            ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:814:12: warning: 'int test_msmat_output(msmat*, char*)' declared 'static' but never defined [-Wunused-function]
  814 | static int test_msmat_output ( msmat * msmat_fh, char * out_fname);
      |            ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:815:16: warning: 'msmat* test_msmat(int, char**)' declared 'static' but never defined [-Wunused-function]
  815 | static msmat * test_msmat(int argc, char ** argv);
      |                ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:818:13: warning: 'void output_bp_chrom(msmat&, char*)' declared 'static' but never defined [-Wunused-function]
  818 | static void output_bp_chrom( msmat & m , char * fname);
      |             ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:819:17: warning: 'msmat* msmat_from_fh(FILE*, sparse_level)' declared 'static' but never defined [-Wunused-function]
  819 | static msmat *  msmat_from_fh ( FILE * msmat_file, sparse_level s = LM_FULL_DATA );
      |                 ^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:820:16: warning: 'msmat* msmat_from_thevoid(const std::vector<float>&, const std::vector<float>&, std::vector<std::vector<float> >&, bool)' declared 'static' but never defined [-Wunused-function]
  820 | static msmat * msmat_from_thevoid ( const std::vector<float> & mzs, const std::vector<float> & rts, std::vector < std::vector< float > > & chroms , bool as_scans = true );
      |                ^~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat.H:48:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/msmat_base.H:69:21: warning: 'valid_fields' defined but not used [-Wunused-variable]
   69 | const static char * valid_fields[] = {
      |                     ^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 74%] Linking CXX static library libMSToolkit.a
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/cmake -P CMakeFiles/MSToolkit.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/MSToolkit.dir/link.txt --verbose=1
/usr/bin/ar qc libMSToolkit.a CMakeFiles/MSToolkit.dir/LazyMatrix.cpp.o CMakeFiles/MSToolkit.dir/MSConvertFile.cpp.o CMakeFiles/MSToolkit.dir/MSObject.cpp.o CMakeFiles/MSToolkit.dir/MSReader.cpp.o CMakeFiles/MSToolkit.dir/MSSingleScan.cpp.o CMakeFiles/MSToolkit.dir/MSTAllRT.cpp.o CMakeFiles/MSToolkit.dir/MSTDemo.cpp.o CMakeFiles/MSToolkit.dir/MSWarper.cpp.o CMakeFiles/MSToolkit.dir/Spectrum.cpp.o CMakeFiles/MSToolkit.dir/crawutils.cpp.o CMakeFiles/MSToolkit.dir/msmat.cpp.o CMakeFiles/MSToolkit.dir/msmat_base.cpp.o CMakeFiles/MSToolkit.dir/msmat_header_parser.cpp.o CMakeFiles/MSToolkit.dir/msmat_test.cpp.o
/usr/bin/ranlib libMSToolkit.a
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/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/MzidentmlReader.cpp.o -MF CMakeFiles/converters.dir/MzidentmlReader.cpp.o.d -o CMakeFiles/converters.dir/MzidentmlReader.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MzidentmlReader.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MzidentmlReader.cpp: In member function 'virtual void MzidentmlReader::getMaxMinCharge(const std::string&, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MzidentmlReader.cpp:86:30: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=]
   86 |   } catch (ifstream::failure e) {
      |                              ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MzidentmlReader.cpp:94:24: warning: catching polymorphic type 'class MyException' by value [-Wcatch-value=]
   94 |   } catch (MyException e) {
      |                        ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MzidentmlReader.cpp:97:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=]
   97 |   } catch (std::exception e) {
      |                           ^
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/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/mzIdentML1.1.0.cxx.o -MF CMakeFiles/converters.dir/mzIdentML1.1.0.cxx.o.d -o CMakeFiles/converters.dir/mzIdentML1.1.0.cxx.o -c /builddir/build/BUILD/percolator-rel-3-05/converters/mzIdentML1.1.0.cxx
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/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/SequestReader.cpp.o -MF CMakeFiles/converters.dir/SequestReader.cpp.o.d -o CMakeFiles/converters.dir/SequestReader.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/SequestReader.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/SequestReader.cpp: In member function 'virtual void SequestReader::createPSM(const mzIdentML_ns::SpectrumIdentificationItemType&, percolatorInNs::fragSpectrumScan::experimentalMass_type, bool, unsigned int, boost::shared_ptr<FragSpectrumScanDatabase>, const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/SequestReader.cpp:169:12: warning: unused variable 'PI' [-Wunused-variable]
  169 |     double PI = boost::lexical_cast<double>(item.calculatedPI().get());
      |            ^~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/SequestReader.cpp:174:14: warning: unused variable 'peptide_length' [-Wunused-variable]
  174 |     unsigned peptide_length = peptideLength(peptideSeqWithFlanks);
      |              ^~~~~~~~~~~~~~
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/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/FragSpectrumScanDatabase.cpp.o -MF CMakeFiles/converters.dir/FragSpectrumScanDatabase.cpp.o.d -o CMakeFiles/converters.dir/FragSpectrumScanDatabase.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/FragSpectrumScanDatabase.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/FragSpectrumScanDatabase.cpp: In member function 'std::string FragSpectrumScanDatabase::decoratePeptide(const percolatorInNs::peptideType&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/FragSpectrumScanDatabase.cpp:80:19: warning: comparison of integer expressions of different signedness: 'const int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   80 |     if (it->first <= peptideSeq.length()) {
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
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/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/converters.dir/MsgfplusReader.cpp.o -MF CMakeFiles/converters.dir/MsgfplusReader.cpp.o.d -o CMakeFiles/converters.dir/MsgfplusReader.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/MsgfplusReader.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MsgfplusReader.cpp: In member function 'virtual void MsgfplusReader::createPSM(const mzIdentML_ns::SpectrumIdentificationItemType&, percolatorInNs::fragSpectrumScan::experimentalMass_type, bool, unsigned int, boost::shared_ptr<FragSpectrumScanDatabase>, const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MsgfplusReader.cpp:333:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
  333 |                           else StdevErrorTop7 = boost::lexical_cast<double>(up.value().get().c_str()); break;
      |                           ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MsgfplusReader.cpp:333:104: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
  333 |                           else StdevErrorTop7 = boost::lexical_cast<double>(up.value().get().c_str()); break;
      |                                                                                                        ^~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MsgfplusReader.cpp:272:14: warning: unused variable 'peptide_length' [-Wunused-variable]
  272 |     unsigned peptide_length = peptideLength(peptideSeqWithFlanks);
      |              ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/MsgfplusReader.cpp:291:12: warning: variable 'SpecEValue' set but not used [-Wunused-but-set-variable]
  291 |     double SpecEValue = 0.0;
      |            ^~~~~~~~~~
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/builddir/build/BUILD/percolator-rel-3-05/src/converters/FragSpectrumScanDatabaseTokyodb.cpp: In member function 'virtual void FragSpectrumScanDatabaseTokyoDB::putFSS(percolatorInNs::fragSpectrumScan&)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/FragSpectrumScanDatabaseTokyodb.cpp:165:10: warning: unused variable 'valueSize' [-Wunused-variable]
  165 |   size_t valueSize(buf.size ());
      |          ^~~~~~~~~
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/builddir/build/BUILD/percolator-rel-3-05/src/converters/TandemReader.cpp: In member function 'virtual void TandemReader::getMaxMinCharge(const std::string&, bool)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/TandemReader.cpp:274:24: warning: catching polymorphic type 'class MyException' by value [-Wcatch-value=]
  274 |   } catch (MyException e) {
      |                        ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/TandemReader.cpp:277:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=]
  277 |   } catch (std::exception e) {
      |                           ^
/builddir/build/BUILD/percolator-rel-3-05/src/converters/TandemReader.cpp: In member function 'void TandemReader::createPSM(const tandem_ns::peptide::domain_type&, double, unsigned int, double, double, bool, boost::shared_ptr<FragSpectrumScanDatabase>, const peptideProteinMapType&, const std::string&, int)':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/TandemReader.cpp:497:29: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  497 |     f_seq.push_back( charge == c ? 1.0 : 0.0);
      |                      ~~~~~~~^~~~
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In file included from /builddir/build/BUILD/percolator-rel-3-05/src/converters/Interface.cpp:18:
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Interface.h: In constructor 'Interface::Interface()':
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Interface.h:50:14: warning: 'Interface::xmlOutput' will be initialized after [-Wreorder]
   50 |         bool xmlOutput;
      |              ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Interface.h:47:21: warning:   'std::string Interface::outputFN' [-Wreorder]
   47 |         std::string outputFN;
      |                     ^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/converters/Interface.cpp:21:1: warning:   when initialized here [-Wreorder]
   21 | Interface::Interface() : xmlOutput(false), outputFN("") { }
      | ^~~~~~~~~
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[ 92%] Building CXX object CMakeFiles/msgf2pin.dir/Msgfplus2Pin.cpp.o
/usr/bin/g++ -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_NO_LIB -DXML_SUPPORT -D__TOKYODB__ -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit -I/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src -I/builddir/build/BUILD/percolator-rel-3-05/converters -I/builddir/build/BUILD/percolator-rel-3-05/src/converters -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/msgf2pin.dir/Msgfplus2Pin.cpp.o -MF CMakeFiles/msgf2pin.dir/Msgfplus2Pin.cpp.o.d -o CMakeFiles/msgf2pin.dir/Msgfplus2Pin.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/converters/Msgfplus2Pin.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 98%] Linking CXX executable sqt2pin
/usr/bin/cmake -E cmake_link_script CMakeFiles/sqt2pin.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc -rdynamic CMakeFiles/sqt2pin.dir/Sqt2Pin.cpp.o -o sqt2pin   -L/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src  libconverters.a libperclibrary_part.a MSToolkit/libMSToolkit.a -lxerces-c /usr/lib64/libboost_filesystem.a /usr/lib64/libboost_atomic.a /usr/lib64/libboost_system.a -ltokyocabinet -lbz2 -lz -lsqlite3 MSToolkit/RAMP/libRAMP.a -ldl 
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
In function 'strchr',
    inlined from 'readPeaks' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1599:35:
/usr/include/string.h:241:27: warning: '__builtin_strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |                           ^
In function 'readPeaks':
lto1: note: source object is likely at address zero
In function 'strchr',
    inlined from 'readPeaks' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1613:35:
/usr/include/string.h:241:27: warning: '__builtin_strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |                           ^
In function 'readPeaks':
lto1: note: source object is likely at address zero
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[100%] Built target sqt2pin
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 96%] Linking CXX executable tandem2pin
/usr/bin/cmake -E cmake_link_script CMakeFiles/tandem2pin.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc -rdynamic CMakeFiles/tandem2pin.dir/Tandem2Pin.cpp.o -o tandem2pin   -L/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src  libconverters.a libperclibrary_part.a MSToolkit/libMSToolkit.a -lxerces-c /usr/lib64/libboost_filesystem.a /usr/lib64/libboost_atomic.a /usr/lib64/libboost_system.a -ltokyocabinet -lbz2 -lz -lsqlite3 MSToolkit/RAMP/libRAMP.a -ldl 
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
In function 'strchr',
    inlined from 'readPeaks' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1599:35:
/usr/include/string.h:241:27: warning: '__builtin_strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |                           ^
In function 'readPeaks':
lto1: note: source object is likely at address zero
In function 'strchr',
    inlined from 'readPeaks' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1613:35:
/usr/include/string.h:241:27: warning: '__builtin_strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |                           ^
In function 'readPeaks':
lto1: note: source object is likely at address zero
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[100%] Built target tandem2pin
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[100%] Linking CXX executable msgf2pin
/usr/bin/cmake -E cmake_link_script CMakeFiles/msgf2pin.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/xsd/cxx/tree -I/usr/include/tirpc -O3 -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc -rdynamic CMakeFiles/msgf2pin.dir/Msgfplus2Pin.cpp.o -o msgf2pin   -L/builddir/build/BUILD/percolator-rel-3-05/src/converters/../../src  libconverters.a libperclibrary_part.a MSToolkit/libMSToolkit.a -lxerces-c /usr/lib64/libboost_filesystem.a /usr/lib64/libboost_atomic.a /usr/lib64/libboost_system.a -ltokyocabinet -lbz2 -lz -lsqlite3 MSToolkit/RAMP/libRAMP.a -ldl 
In function 'strchr',
    inlined from 'readPeaks' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1599:35:
/usr/include/string.h:241:27: warning: '__builtin_strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |                           ^
In function 'readPeaks':
lto1: note: source object is likely at address zero
In function 'strchr',
    inlined from 'readPeaks' at /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP/ramp.cpp:1613:35:
/usr/include/string.h:241:27: warning: '__builtin_strchr' reading 1 or more bytes from a region of size 0 [-Wstringop-overread]
  241 |   return __builtin_strchr (__s, __c);
      |                           ^
In function 'readPeaks':
lto1: note: source object is likely at address zero
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[100%] Built target msgf2pin
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles 0
+ popd
~/build/BUILD/percolator-rel-3-05
+ mkdir -p elude
+ pushd elude
~/build/BUILD/percolator-rel-3-05/elude ~/build/BUILD/percolator-rel-3-05
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_VERBOSE_MAKEFILE=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_PREFIX_PATH:STRING=/usr -DBoost_USE_STATIC_LIBS:BOOL=OFF -DCMAKE_USE_RELATIVE_PATHS:BOOL=ON '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc' '-DCMAKE_EXE_LINKER_FLAGS_RELEASE:STRING=-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc' -DTARGET_ARCH=ppc64le ../src/elude_tool
-- The C compiler identification is GNU 13.0.0
-- The CXX compiler identification is GNU 13.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- 
-- -------------------------------------------------------------------------------
-- Building ELUDE:
-- change a configuration variable with: cmake -D<Variable>=<Value>
-- CMAKE_INSTALL_PREFIX = /usr
-- CMAKE_BUILD_TYPE = Release
-- PERCOLATOR_SOURCE_DIR = /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../..
-- CMAKE_PREFIX_PATH = /usr
-- GOOGLE_TEST = 
-- GOOGLE_TEST_PATH = 
-- TARGET_ARCH = ppc64le
-- PROFILING = 
-- -------------------------------------------------------------------------------
-- 
-- Architecture: 
-- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found version "1.78.0")  
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    CMAKE_SKIP_INSTALL_RPATH
    CMAKE_USE_RELATIVE_PATHS
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /builddir/build/BUILD/percolator-rel-3-05/elude
+ /usr/bin/make -O -j5 V=1 VERBOSE=1
/usr/bin/cmake -S/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool -B/builddir/build/BUILD/percolator-rel-3-05/elude --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/elude//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
/usr/bin/make  -f CMakeFiles/eludelibrary.dir/build.make CMakeFiles/eludelibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
cd /builddir/build/BUILD/percolator-rel-3-05/elude && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool /builddir/build/BUILD/percolator-rel-3-05/elude /builddir/build/BUILD/percolator-rel-3-05/elude /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles/eludelibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/make  -f CMakeFiles/eludelibrary.dir/build.make CMakeFiles/eludelibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[ 17%] Building CXX object CMakeFiles/eludelibrary.dir/EludeMain.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/EludeMain.cpp.o -MF CMakeFiles/eludelibrary.dir/EludeMain.cpp.o.d -o CMakeFiles/eludelibrary.dir/EludeMain.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeMain.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[ 13%] Building CXX object CMakeFiles/eludelibrary.dir/LibSVRModel.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/LibSVRModel.cpp.o -MF CMakeFiles/eludelibrary.dir/LibSVRModel.cpp.o.d -o CMakeFiles/eludelibrary.dir/LibSVRModel.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:27:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h: In member function 'bool LibSVRModel::IsModelNull() const':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h:57:65: warning: second operand of conditional expression has no effect [-Wunused-value]
   57 |    inline bool IsModelNull() const { svr_ == NULL ? true : false; }
      |                                                                 ^
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h:57:65: warning: third operand of conditional expression has no effect [-Wunused-value]
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h:57:67: warning: no return statement in function returning non-void [-Wreturn-type]
   57 |    inline bool IsModelNull() const { svr_ == NULL ? true : false; }
      |                                                                   ^
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'virtual int LibSVRModel::LoadModel(FILE*)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:284:1: warning: control reaches end of non-void function [-Wreturn-type]
  284 | }
      | ^
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateLinearModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:204:21: warning: 'best_c' may be used uninitialized [-Wmaybe-uninitialized]
  204 |   svr_parameters_.C = best_c;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:182:10: note: 'best_c' was declared here
  182 |   double best_c, best_e;
      |          ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:205:21: warning: 'best_e' may be used uninitialized [-Wmaybe-uninitialized]
  205 |   svr_parameters_.p = best_e;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:182:18: note: 'best_e' was declared here
  182 |   double best_c, best_e;
      |                  ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateRBFModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:240:21: warning: 'best_c' may be used uninitialized [-Wmaybe-uninitialized]
  240 |   svr_parameters_.C = best_c;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:213:10: note: 'best_c' was declared here
  213 |   double best_c, best_e, best_g;
      |          ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:241:21: warning: 'best_e' may be used uninitialized [-Wmaybe-uninitialized]
  241 |   svr_parameters_.p = best_e;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:213:18: note: 'best_e' was declared here
  213 |   double best_c, best_e, best_g;
      |                  ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:242:25: warning: 'best_g' may be used uninitialized [-Wmaybe-uninitialized]
  242 |   svr_parameters_.gamma = best_g;
      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:213:26: note: 'best_g' was declared here
  213 |   double best_c, best_e, best_g;
      |                          ^~~~~~
In member function 'LibSVRModel::CalibrateRBFModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)',
    inlined from 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)' at /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:255:29:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:240:21: warning: 'best_c' may be used uninitialized [-Wmaybe-uninitialized]
  240 |   svr_parameters_.C = best_c;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:213:10: note: 'best_c' was declared here
  213 |   double best_c, best_e, best_g;
      |          ^~~~~~
In member function 'LibSVRModel::CalibrateRBFModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)',
    inlined from 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)' at /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:255:29:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:241:21: warning: 'best_e' may be used uninitialized [-Wmaybe-uninitialized]
  241 |   svr_parameters_.p = best_e;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:213:18: note: 'best_e' was declared here
  213 |   double best_c, best_e, best_g;
      |                  ^~~~~~
In member function 'LibSVRModel::CalibrateRBFModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)',
    inlined from 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)' at /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:255:29:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:242:25: warning: 'best_g' may be used uninitialized [-Wmaybe-uninitialized]
  242 |   svr_parameters_.gamma = best_g;
      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:213:26: note: 'best_g' was declared here
  213 |   double best_c, best_e, best_g;
      |                          ^~~~~~
In member function 'LibSVRModel::CalibrateLinearModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)',
    inlined from 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)' at /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:253:32:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:204:21: warning: 'best_c' may be used uninitialized [-Wmaybe-uninitialized]
  204 |   svr_parameters_.C = best_c;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:182:10: note: 'best_c' was declared here
  182 |   double best_c, best_e;
      |          ^~~~~~
In member function 'LibSVRModel::CalibrateLinearModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)',
    inlined from 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)' at /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:253:32:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:205:21: warning: 'best_e' may be used uninitialized [-Wmaybe-uninitialized]
  205 |   svr_parameters_.p = best_e;
      |   ~~~~~make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[ 21%] Building CXX object CMakeFiles/eludelibrary.dir/LibsvmWrapper.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/LibsvmWrapper.cpp.o -MF CMakeFiles/eludelibrary.dir/LibsvmWrapper.cpp.o.d -o CMakeFiles/eludelibrary.dir/LibsvmWrapper.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibsvmWrapper.cpp
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
~~~~~~~~~~~~~^~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp: In member function 'LibSVRModel::CalibrateModel(std::vector<PSMDescription*, std::allocator<PSMDescription*> > const&, int const&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.cpp:182:18: note: 'best_e' was declared here
  182 |   double best_c, best_e;
      |                  ^~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibsvmWrapper.cpp: In function 'svm_model* libsvm_wrapper::LoadModel(FILE*)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibsvmWrapper.cpp:172:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
  172 |   int ret;
      |       ^~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[  8%] Building CXX object CMakeFiles/eludelibrary.dir/RetentionFeatures.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/RetentionFeatures.cpp.o -MF CMakeFiles/eludelibrary.dir/RetentionFeatures.cpp.o.d -o CMakeFiles/eludelibrary.dir/RetentionFeatures.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionFeatures.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionFeatures.cpp: In static member function 'static double RetentionFeatures::IndexN(const std::string&, const std::map<std::__cxx11::basic_string<char>, double>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionFeatures.cpp:304:21: warning: unused variable 'len' [-Wunused-variable]
  304 |   int end_position, len = peptide.size();
      |                     ^~~
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[ 26%] Building CXX object CMakeFiles/eludelibrary.dir/RetentionModel.cpp.o
/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/RetentionModel.cpp.o -MF CMakeFiles/eludelibrary.dir/RetentionModel.cpp.o.d -o CMakeFiles/eludelibrary.dir/RetentionModel.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:17:1: warning: "/*" within comment [-Wcomment]
   17 | /*
      |  
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:27:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h: In member function 'bool LibSVRModel::IsModelNull() const':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h:57:65: warning: second operand of conditional expression has no effect [-Wunused-value]
   57 |    inline bool IsModelNull() const { svr_ == NULL ? true : false; }
      |                                                                 ^
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h:57:65: warning: third operand of conditional expression has no effect [-Wunused-value]
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LibSVRModel.h:57:67: warning: no return statement in function returning non-void [-Wreturn-type]
   57 |    inline bool IsModelNull() const { svr_ == NULL ? true : false; }
      |                                                                   ^
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:24:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.h: In constructor 'RetentionModel::RetentionModel(Normalizer*)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.h:99:16: warning: 'RetentionModel::the_normalizer_' will be initialized after [-Wreorder]
   99 |    Normalizer *the_normalizer_;
      |                ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.h:95:14: warning:   'SVRModel* RetentionModel::svr_model_' [-Wreorder]
   95 |    SVRModel *svr_model_;
      |              ^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:30:1: warning:   when initialized here [-Wreorder]
   30 | RetentionModel::RetentionModel(Normalizer *norm) : the_normalizer_(norm),
      | ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp: In destructor 'RetentionModel::~RetentionModel()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:36:5: warning: deleting object of abstract class type 'SVRModel' which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
   36 |     delete svr_model_;
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp: In member function 'void RetentionModel::PrintSub()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:62:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   62 |   for(int i = 0; i < vsub_.size(); ++i)
      |                  ~~^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp: In member function 'int RetentionModel::TrainRetentionModel(const std::set<std::__cxx11::basic_string<char> >&, const std::map<std::__cxx11::basic_string<char>, double>&, bool, std::vector<PSMDescription*>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:187:5: warning: deleting object of abstract class type 'SVRModel' which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
  187 |     delete svr_model_;
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp: In member function 'int RetentionModel::SaveModelToFile(const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:291:20: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  291 |   if (vsub_.size() !=  number_features) {
      |       ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp: In member function 'int RetentionModel::LoadModelFromFile(const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:356:5: warning: deleting object of abstract class type 'SVRModel' which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
  356 |     delete svr_model_;
      |     ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/RetentionModel.cpp:363:24: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
  363 |   int number_features, ret;
      |                        ^~~
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
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/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/builddir/build/BUILD/percolator-rel-3-05/src/Normalizer.cpp.o -MF CMakeFiles/eludelibrary.dir/builddir/build/BUILD/percolator-rel-3-05/src/Normalizer.cpp.o.d -o CMakeFiles/eludelibrary.dir/builddir/build/BUILD/percolator-rel-3-05/src/Normalizer.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/Normalizer.cpp
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/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/LTSRegression.cpp.o -MF CMakeFiles/eludelibrary.dir/LTSRegression.cpp.o.d -o CMakeFiles/eludelibrary.dir/LTSRegression.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp: In member function 'void LTSRegression::setData(std::vector<double>&, std::vector<double>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp:48:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   48 |   for (int i = 0; i < x.size(); ++i) {
      |                   ~~^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp: In member function 'void LTSRegression::fillResiduals(std::pair<double, double>)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp:84:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<dataPoint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   84 |   for (int i = 0; i < data.size(); ++i) {
      |                   ~~^~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp: In member function 'void LTSRegression::runLTS()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp:168:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  168 |         for (int i = 1; i < Q.size(); ++i)
      |                         ~~^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp:177:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<dataPoint> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  177 |   for (int j = 0; j < best10Subsets.size(); ++j) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp: In member function 'void LTSRegression::printVector(std::vector<dataPoint>)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp:209:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<dataPoint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  209 |   for (int i = 0; i < v.size(); ++i) {
      |                   ~~^~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp: In member function 'void LTSRegression::printDataPoints()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/LTSRegression.cpp:220:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<dataPoint>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  220 |   for (int i = h; i < data.size(); ++i) {
      |                   ~~^~~~~~~~~~~~~
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In file included from /builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp:21:
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h: In constructor 'PSMDescriptionDOC::PSMDescriptionDOC()':
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:42: warning: 'PSMDescriptionDOC::retentionTime_' will be initialized after [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:26: warning:   'double PSMDescriptionDOC::predictedTime_' [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp:26:1: warning:   when initialized here [-Wreorder]
   26 | PSMDescriptionDOC::PSMDescriptionDOC() :
      | ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h: In constructor 'PSMDescriptionDOC::PSMDescriptionDOC(std::string, double)':
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:42: warning: 'PSMDescriptionDOC::retentionTime_' will be initialized after [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.h:92:26: warning:   'double PSMDescriptionDOC::predictedTime_' [-Wreorder]
   92 |   double pI_, massDiff_, predictedTime_, retentionTime_;
      |                          ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/PSMDescriptionDOC.cpp:30:1: warning:   when initialized here [-Wreorder]
   30 | PSMDescriptionDOC::PSMDescriptionDOC(const string pep, const double retTime) :
      | ^~~~~~~~~~~~~~~~~
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/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/DataManager.cpp.o -MF CMakeFiles/eludelibrary.dir/DataManager.cpp.o.d -o CMakeFiles/eludelibrary.dir/DataManager.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/DataManager.cpp
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/DataManager.cpp: In static member function 'static std::vector<std::pair<PSMDescription*, std::__cxx11::basic_string<char> > > DataManager::RemoveInSourceFragments(const Enzyme*, const double&, const std::map<std::__cxx11::basic_string<char>, double>&, bool, std::vector<PSMDescription*>&, std::vector<PSMDescription*>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/DataManager.cpp:334:50: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<PSMDescription*>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  334 |     if (!remove_from_test && (initial_train_size != train_psms.size())) {
      |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/DataManager.cpp: In static member function 'static std::vector<PSMDescription*> DataManager::RemoveNonEnzymatic(const Enzyme*, std::vector<PSMDescription*>&, const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/DataManager.cpp:354:7: warning: unused variable 'initial_size' [-Wunused-variable]
  354 |   int initial_size = psms.size();
      |       ^~~~~~~~~~~~
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/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/eludelibrary.dir/EludeCaller.cpp.o -MF CMakeFiles/eludelibrary.dir/EludeCaller.cpp.o.d -o CMakeFiles/eludelibrary.dir/EludeCaller.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp
In file included from /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:30:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h: In constructor 'EludeCaller::EludeCaller()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:167:9: warning: 'EludeCaller::remove_non_enzymatic_' will be initialized after [-Wreorder]
  167 |    bool remove_non_enzymatic_;
      |         ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:143:9: warning:   'bool EludeCaller::context_format_' [-Wreorder]
  143 |    bool context_format_;
      |         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:44:1: warning:   when initialized here [-Wreorder]
   44 | EludeCaller::EludeCaller():automatic_model_sel_(false), append_model_(false),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:189:20: warning: 'EludeCaller::rt_model_' will be initialized after [-Wreorder]
  189 |    RetentionModel *rt_model_;
      |                    ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:173:9: warning:   'bool EludeCaller::ignore_ptms_' [-Wreorder]
  173 |    bool ignore_ptms_;
      |         ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:44:1: warning:   when initialized here [-Wreorder]
   44 | EludeCaller::EludeCaller():automatic_model_sel_(false), append_model_(false),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:196:9: warning: 'EludeCaller::supress_print_' will be initialized after [-Wreorder]
  196 |    bool supress_print_;
      |         ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:175:9: warning:   'bool EludeCaller::only_hydrophobicity_index_' [-Wreorder]
  175 |    bool only_hydrophobicity_index_;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:44:1: warning:   when initialized here [-Wreorder]
   44 | EludeCaller::EludeCaller():automatic_model_sel_(false), append_model_(false),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In member function 'int EludeCaller::AddModelLibrary() const':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:519:20: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
  519 |       while (found != string::npos) {
      |              ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In member function 'int EludeCaller::Run()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:639:9: warning: unused variable 'ret' [-Wunused-variable]
  639 |     int ret = 1;
      |         ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In static member function 'static double EludeCaller::ComputeRankCorrelation(std::vector<PSMDescription*>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:940:10: warning: unused variable 'corr' [-Wunused-variable]
  940 |   double corr = 0.0, d = 0.0, avg_rank, rank_p;
      |          ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In static member function 'static std::string EludeCaller::GetFileName(const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:1026:39: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
 1026 |   if ((pos1 = path.find_last_of("/")) == string::npos) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:1027:41: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
 1027 |     if ((pos1 = path.find_last_of("\\"))== string::npos) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:1032:44: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
 1032 |   if ((pos2 = file_name.find_last_of(".")) != string::npos) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
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/usr/bin/g++  -I/builddir/build/BUILD/percolator-rel-3-05/elude -I/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -MD -MT CMakeFiles/elude.dir/EludeCaller.cpp.o -MF CMakeFiles/elude.dir/EludeCaller.cpp.o.d -o CMakeFiles/elude.dir/EludeCaller.cpp.o -c /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp
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In file included from /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:30:
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h: In constructor 'EludeCaller::EludeCaller()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:167:9: warning: 'EludeCaller::remove_non_enzymatic_' will be initialized after [-Wreorder]
  167 |    bool remove_non_enzymatic_;
      |         ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:143:9: warning:   'bool EludeCaller::context_format_' [-Wreorder]
  143 |    bool context_format_;
      |         ^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:44:1: warning:   when initialized here [-Wreorder]
   44 | EludeCaller::EludeCaller():automatic_model_sel_(false), append_model_(false),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:189:20: warning: 'EludeCaller::rt_model_' will be initialized after [-Wreorder]
  189 |    RetentionModel *rt_model_;
      |                    ^~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:173:9: warning:   'bool EludeCaller::ignore_ptms_' [-Wreorder]
  173 |    bool ignore_ptms_;
      |         ^~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:44:1: warning:   when initialized here [-Wreorder]
   44 | EludeCaller::EludeCaller():automatic_model_sel_(false), append_model_(false),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:196:9: warning: 'EludeCaller::supress_print_' will be initialized after [-Wreorder]
  196 |    bool supress_print_;
      |         ^~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.h:175:9: warning:   'bool EludeCaller::only_hydrophobicity_index_' [-Wreorder]
  175 |    bool only_hydrophobicity_index_;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:44:1: warning:   when initialized here [-Wreorder]
   44 | EludeCaller::EludeCaller():automatic_model_sel_(false), append_model_(false),
      | ^~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In member function 'int EludeCaller::AddModelLibrary() const':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:519:20: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
  519 |       while (found != string::npos) {
      |              ~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In member function 'int EludeCaller::Run()':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:639:9: warning: unused variable 'ret' [-Wunused-variable]
  639 |     int ret = 1;
      |         ^~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In static member function 'static double EludeCaller::ComputeRankCorrelation(std::vector<PSMDescription*>&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:940:10: warning: unused variable 'corr' [-Wunused-variable]
  940 |   double corr = 0.0, d = 0.0, avg_rank, rank_p;
      |          ^~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp: In static member function 'static std::string EludeCaller::GetFileName(const std::string&)':
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:1026:39: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
 1026 |   if ((pos1 = path.find_last_of("/")) == string::npos) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:1027:41: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
 1027 |     if ((pos1 = path.find_last_of("\\"))== string::npos) {
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/EludeCaller.cpp:1032:44: warning: comparison of integer expressions of different signedness: 'int' and 'const std::__cxx11::basic_string<char>::size_type' {aka 'const long unsigned int'} [-Wsign-compare]
 1032 |   if ((pos2 = file_name.find_last_of(".")) != string::npos) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[100%] Linking CXX executable elude
/usr/bin/cmake -E cmake_link_script CMakeFiles/elude.dir/link.txt --verbose=1
/usr/bin/g++ -std=c++14 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-deprecated-declarations -D_GLIBCXX_PARALLEL -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I../src -I/usr/include/tirpc -O3 -DNDEBUG -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -ltirpc -rdynamic CMakeFiles/elude.dir/EludeCaller.cpp.o -o elude   -L/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool/../../src  libeludelibrary.a 
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[100%] Built target elude
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles 0
+ popd
~/build/BUILD/percolator-rel-3-05
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.aFSkng
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le
++ dirname /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd percolator-rel-3-05
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le 'INSTALL=/usr/bin/install -p' -C percolator
make: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
/usr/bin/cmake -S/builddir/build/BUILD/percolator-rel-3-05 -B/builddir/build/BUILD/percolator-rel-3-05/percolator --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/percolator/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/percolator//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src /builddir/build/BUILD/percolator-rel-3-05/percolator/src/CMakeFiles/perclibrary.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/picked_protein /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein /builddir/build/BUILD/percolator-rel-3-05/percolator/src/picked_protein/CMakeFiles/picked_protein.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/blas /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas /builddir/build/BUILD/percolator-rel-3-05/percolator/src/blas/CMakeFiles/blas.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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/usr/bin/make  -f src/fido/CMakeFiles/fido.dir/build.make src/fido/CMakeFiles/fido.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/fido /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido /builddir/build/BUILD/percolator-rel-3-05/percolator/src/fido/CMakeFiles/fido.dir/DependInfo.cmake --color=
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 94%] Built target fido
/usr/bin/make  -f src/CMakeFiles/percolator.dir/build.make src/CMakeFiles/percolator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src /builddir/build/BUILD/percolator-rel-3-05/percolator/src/CMakeFiles/percolator.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[2]: Nothing to be done for 'src/CMakeFiles/percolator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[ 97%] Built target percolator
/usr/bin/make  -f src/qvality/CMakeFiles/qvality.dir/build.make src/qvality/CMakeFiles/qvality.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
cd /builddir/build/BUILD/percolator-rel-3-05/percolator && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05 /builddir/build/BUILD/percolator-rel-3-05/src/qvality /builddir/build/BUILD/percolator-rel-3-05/percolator /builddir/build/BUILD/percolator-rel-3-05/percolator/src/qvality /builddir/build/BUILD/percolator-rel-3-05/percolator/src/qvality/CMakeFiles/qvality.dir/DependInfo.cmake --color=
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make[2]: Nothing to be done for 'src/qvality/CMakeFiles/qvality.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
[100%] Built target qvality
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
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make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/xml/percolator/xml-pin-1-3/percolator_in.xsd
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/xml/percolator/xml-pout-1-5/percolator_out.xsd
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/percolator
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/qvality
make: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/percolator'
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le 'INSTALL=/usr/bin/install -p' -C converters
make: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
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/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/converters//CMakeFiles/progress.marks
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make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
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make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/perclibrary_part.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/generate_perc_xsdfiles.dir/DependInfo.cmake --color=
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/usr/bin/make  -f CMakeFiles/converters.dir/build.make CMakeFiles/converters.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/converters.dir/DependInfo.cmake --color=
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[ 56%] Built target converters
/usr/bin/make  -f MSToolkit/RAMP/CMakeFiles/RAMP.dir/build.make MSToolkit/RAMP/CMakeFiles/RAMP.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters/MSToolkit/RAMP /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit/RAMP /builddir/build/BUILD/percolator-rel-3-05/converters/MSToolkit/RAMP/CMakeFiles/RAMP.dir/DependInfo.cmake --color=
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/usr/bin/make  -f MSToolkit/CMakeFiles/MSToolkit.dir/build.make MSToolkit/CMakeFiles/MSToolkit.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Nothing to be done for 'MSToolkit/CMakeFiles/MSToolkit.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 89%] Built target MSToolkit
/usr/bin/make  -f CMakeFiles/msgf2pin.dir/build.make CMakeFiles/msgf2pin.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/msgf2pin.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/usr/bin/make  -f CMakeFiles/msgf2pin.dir/build.make CMakeFiles/msgf2pin.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Nothing to be done for 'CMakeFiles/msgf2pin.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 92%] Built target msgf2pin
/usr/bin/make  -f CMakeFiles/sqt2pin.dir/build.make CMakeFiles/sqt2pin.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/sqt2pin.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/usr/bin/make  -f CMakeFiles/sqt2pin.dir/build.make CMakeFiles/sqt2pin.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Nothing to be done for 'CMakeFiles/sqt2pin.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[ 96%] Built target sqt2pin
/usr/bin/make  -f CMakeFiles/tandem2pin.dir/build.make CMakeFiles/tandem2pin.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
cd /builddir/build/BUILD/percolator-rel-3-05/converters && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/src/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles/tandem2pin.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/usr/bin/make  -f CMakeFiles/tandem2pin.dir/build.make CMakeFiles/tandem2pin.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[2]: Nothing to be done for 'CMakeFiles/tandem2pin.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
[100%] Built target tandem2pin
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/converters/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/msgf2pin
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/sqt2pin
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/tandem2pin
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/percolator/xml-1-1/mzIdentML1.1.0.xsd
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/percolator/xml-2011.12.01.1/gaml_tandem1.0.xsd
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/percolator/xml-2011.12.01.1/tandem2011.12.01.1.xsd
make: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/converters'
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le 'INSTALL=/usr/bin/install -p' -C elude
make: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/cmake -S/builddir/build/BUILD/percolator-rel-3-05/src/elude_tool -B/builddir/build/BUILD/percolator-rel-3-05/elude --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles /builddir/build/BUILD/percolator-rel-3-05/elude//CMakeFiles/progress.marks
/usr/bin/make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/make  -f CMakeFiles/eludelibrary.dir/build.make CMakeFiles/eludelibrary.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
cd /builddir/build/BUILD/percolator-rel-3-05/elude && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool /builddir/build/BUILD/percolator-rel-3-05/elude /builddir/build/BUILD/percolator-rel-3-05/elude /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles/eludelibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/make  -f CMakeFiles/eludelibrary.dir/build.make CMakeFiles/eludelibrary.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
make[2]: Nothing to be done for 'CMakeFiles/eludelibrary.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[ 91%] Built target eludelibrary
/usr/bin/make  -f CMakeFiles/elude.dir/build.make CMakeFiles/elude.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
cd /builddir/build/BUILD/percolator-rel-3-05/elude && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool /builddir/build/BUILD/percolator-rel-3-05/src/elude_tool /builddir/build/BUILD/percolator-rel-3-05/elude /builddir/build/BUILD/percolator-rel-3-05/elude /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles/elude.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/make  -f CMakeFiles/elude.dir/build.make CMakeFiles/elude.dir/build
make[2]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
make[2]: Nothing to be done for 'CMakeFiles/elude.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
[100%] Built target elude
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/percolator-rel-3-05/elude/CMakeFiles 0
/usr/bin/make  -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/elude
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/yeast_60.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/yeast_40.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/yeast_20.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/tfa.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Luna_90.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Luna_60.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Luna_240.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Luna_180.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Luna_120.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Jupiter_90.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Jupiter_60.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Jupiter_240.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Jupiter_180.model
-- Installing: /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/elude/models/Jupiter_120.model
make: Leaving directory '/builddir/build/BUILD/percolator-rel-3-05/elude'
+ mkdir -p /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
++ find . -type f '(' -name '*.a' ')'
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./elude/libeludelibrary.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./converters/libconverters.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./converters/libperclibrary_part.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./converters/MSToolkit/libMSToolkit.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./converters/MSToolkit/RAMP/libRAMP.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./fido/libfido.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./percolator/src/libperclibrary.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./percolator/src/picked_protein/libpicked_protein.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./percolator/src/fido/libfido.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ for i in `find . -type f \( -name "*.a" \)`
+ install -pm 755 ./percolator/src/blas/libblas.a /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/lib64/percolator
+ /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 3.05-10.fc38 --unique-debug-suffix -3.05-10.fc38.ppc64le --unique-debug-src-base percolator-3.05-10.fc38.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/percolator-rel-3-05
extracting debug info from /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/msgf2pin
extracting debug info from /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/qvality
extracting debug info from /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/sqt2pin
extracting debug info from /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/percolator
extracting debug info from /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/elude
extracting debug info from /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/bin/tandem2pin
original debug info size: 82816kB, size after compression: 67072kB
/usr/bin/sepdebugcrcfix: Updated 6 CRC32s, 0 CRC32s did match.
6052 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/src/serializer.hxx is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/src/serializer.cxx is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/src/parser.hxx is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/src/parser.cxx is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/percolator/src/Globals.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/elude/Globals.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/percolator-3.05-10.fc38.ppc64le/converters/Globals.h is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.7gty8g
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd percolator-rel-3-05
+ mkdir -p test
+ cd test
+ ../converters/sqt2pin -o pin.tab ../yeast-01.sqt ../yeast-01.shuffled.sqt

Pin-converter version 3.05.0, Build Date Jul 22 2022 00:00:00
Copyright (c) 2013 Lukas Käll. All rights reserved.
Written by Lukas Käll (lukas.kall@scilifelab.se) in the
School of Biotechnology at KTH - Royal Institute of Technology, Stockholm.
Issued command:
../converters/sqt2pin -o pin.tab ../yeast-01.sqt ../yeast-01.shuffled.sqt
on bfc36bf986b54119b7cf7fa00b96ec32
Reading ../yeast-01.sqt
Reading ../yeast-01.shuffled.sqt
+ ../percolator/src/percolator -X pout.xml pin.tab
Percolator version 3.05.0, Build Date Jul 22 2022 00:00:00
Copyright (c) 2006-9 University of Washington. All rights reserved.
Written by Lukas Käll (lukall@u.washington.edu) in the
Department of Genome Sciences at the University of Washington.
Issued command:
../percolator/src/percolator -X pout.xml pin.tab
Started Mon Dec 26 08:29:11 2022
 on bfc36bf986b54119b7cf7fa00b96ec32
Hyperparameters: selectionFdr=0.01, Cpos=0, Cneg=0, maxNiter=10
Reading tab-delimited input from datafile pin.tab
Features:
lnrSp deltLCn deltCn Xcorr Sp IonFrac Mass PepLen Charge1 Charge2 Charge3 enzN enzC enzInt lnNumSP dM absdM 
Found 139410 PSMs
Separate target and decoy search inputs detected, using mix-max method.
Train/test set contains 69705 positives and 69705 negatives, size ratio=1 and pi0=1
Selecting Cpos by cross-validation.
Selecting Cneg by cross-validation.
Found 7004 test set positives with q<0.01 in initial direction
Reading in data and feature calculation took 0.693862 cpu seconds or 1 seconds wall clock time.
---Training with Cpos selected by cross validation, Cneg selected by cross validation, initial_fdr=0.01, fdr=0.01
Iteration 1:	Estimated 10193 PSMs with q<0.01
Iteration 2:	Estimated 11236 PSMs with q<0.01
Iteration 3:	Estimated 11461 PSMs with q<0.01
Iteration 4:	Estimated 11509 PSMs with q<0.01
Iteration 5:	Estimated 11560 PSMs with q<0.01
Iteration 6:	Estimated 11576 PSMs with q<0.01
Iteration 7:	Estimated 11602 PSMs with q<0.01
Iteration 8:	Estimated 11617 PSMs with q<0.01
Iteration 9:	Estimated 11617 PSMs with q<0.01
Iteration 10:	Estimated 11616 PSMs with q<0.01
Learned normalized SVM weights for the 3 cross-validation splits:
 Split1	 Split2	 Split3	FeatureName
-0.4835	-0.3200	-0.4134	lnrSp
 0.1414	 0.1989	 0.1695	deltLCn
 0.6622	 0.6394	 0.7524	deltCn
 0.6588	 0.6486	 0.6804	Xcorr
-0.0413	 0.0625	-0.0978	Sp
 0.0244	 0.1588	 0.2191	IonFrac
 0.8867	 0.6292	 0.4141	Mass
-0.7489	-0.3031	-0.0249	PepLen
 0.1083	 0.1800	 0.1009	Charge1
 0.0250	 0.0242	 0.0043	Charge2
-0.0471	-0.0610	-0.0250	Charge3
 1.3220	 1.2346	 1.2522	enzN
 1.3377	 1.1510	 1.1172	enzC
-1.9073	-1.7718	-1.6438	enzInt
-0.0159	-0.0088	 0.1201	lnNumSP
 0.0188	 0.0011	 0.0218	dM
 0.0044	 0.0139	 0.0016	absdM
-6.5792	-6.3779	-5.8394	m0
Found 11446 test set PSMs with q<0.01.
Tossing out "redundant" PSMs keeping only the best scoring PSM for each unique peptide.
Selecting pi_0=0.86749
Calculating q values.
New pi_0 estimate on final list yields 7371 target peptides with q<0.01.
Calculating posterior error probabilities (PEPs).
Processing took 33.72 cpu seconds or 15 seconds wall clock time.
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: percolator-3.05-10.fc38.ppc64le
Provides: percolator = 3.05-10.fc38 percolator(ppc-64) = 3.05-10.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.25)(64bit) libc.so.6(GLIBC_2.28)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libsqlite3.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.10)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtirpc.so.3()(64bit) libtirpc.so.3(TIRPC_0.3.0)(64bit) libtokyocabinet.so.9()(64bit) libxerces-c-3.2.so()(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) rtld(GNU_HASH)
Obsoletes: fido-pi = 0:0
Processing files: percolator-data-3.05-10.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.WE2Y56
+ umask 022
+ cd /builddir/build/BUILD
+ cd percolator-rel-3-05
+ DOCDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-data
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-data
+ cp -pr ReadMe.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-data
+ cp -pr src/converters/MSToolkit/RAMP/RAMP-README src/converters/MSToolkit/RAMP/RAMP-Readme.Mike.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-data
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nNS65W
+ umask 022
+ cd /builddir/build/BUILD
+ cd percolator-rel-3-05
+ LICENSEDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-data
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-data
+ cp -pr license.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-data
+ cp -pr RAMP_license_lgpl-2.1.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-data
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: percolator-data = 3.05-10.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: percolator-static-3.05-10.fc38.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FYWsvM
+ umask 022
+ cd /builddir/build/BUILD
+ cd percolator-rel-3-05
+ DOCDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-static
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-static
+ cp -pr ReadMe.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-static
+ cp -pr src/converters/MSToolkit/RAMP/RAMP-README src/converters/MSToolkit/RAMP/RAMP-Readme.Mike.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/doc/percolator-static
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.3LfqSa
+ umask 022
+ cd /builddir/build/BUILD
+ cd percolator-rel-3-05
+ LICENSEDIR=/builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-static
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-static
+ cp -pr license.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-static
+ cp -pr RAMP_license_lgpl-2.1.txt /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le/usr/share/licenses/percolator-static
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: percolator-static = 3.05-10.fc38 percolator-static(ppc-64) = 3.05-10.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: percolator-debugsource-3.05-10.fc38.ppc64le
Provides: percolator-debugsource = 3.05-10.fc38 percolator-debugsource(ppc-64) = 3.05-10.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: percolator-debuginfo-3.05-10.fc38.ppc64le
Provides: debuginfo(build-id) = 146d6f583ae80e3fcca2aa12a19d65235e385f7e debuginfo(build-id) = 21595aef00690c7e6413446b935b5a82c10bc99c debuginfo(build-id) = 31c416021d179fd3524337aac8fbbb184f18e79d debuginfo(build-id) = 6230280fadb079d333ee13da7a6295f4c0bd05f5 debuginfo(build-id) = 93f0507ce5ba15c18229b77f2c54c8b4334b518e debuginfo(build-id) = c438aad60181733bb6caddac0252e2efa744bccb percolator-debuginfo = 3.05-10.fc38 percolator-debuginfo(ppc-64) = 3.05-10.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: percolator-debugsource(ppc-64) = 3.05-10.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le
Wrote: /builddir/build/RPMS/percolator-debugsource-3.05-10.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/percolator-3.05-10.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/percolator-data-3.05-10.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/percolator-static-3.05-10.fc38.ppc64le.rpm
Wrote: /builddir/build/RPMS/percolator-debuginfo-3.05-10.fc38.ppc64le.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Yi2PKF
+ umask 022
+ cd /builddir/build/BUILD
+ cd percolator-rel-3-05
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/percolator-3.05-10.fc38.ppc64le
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xlCAOB
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf percolator-rel-3-05 percolator-rel-3-05.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild percolator-3.05-10.fc38.src.rpm
Finish: build phase for percolator-3.05-10.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1672042909.556246/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/percolator-3.05-10.fc38.src.rpm) Config(child) 5 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool