%global packname preprocessCore %global Rvers 3.4.0 Name: R-%{packname} Version: 1.58.0 Release: 1%{dist} Summary: A collection of pre-processing functions License: LGPLv2+ URL: http://bioconductor.org/packages/release/bioc/html/%{packname}.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz Source1: preprocessCore_license BuildRequires: R-devel >= %{Rvers} tex(latex) R-stats gcc BuildRequires: autoconf, automake, libtool Patch0: R-preprocessCore-dlsym-pthread_get_minstack-fix.patch %package devel Summary: Development files for %{name} Requires: %{name}%{?_isa} = %{version}-%{release} %description A library of core preprocessing routines %description devel The %{name}-devel package contains Header and libraries files for developing applications that use %{name} %prep %setup -q -c -n %{packname} %patch0 -p1 -b .dlsym pushd %{packname} autoreconf -ifv . popd %build %install mkdir -p %{buildroot}%{_libdir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_libdir}/R/library/R.css ## Keep the headers of place for the -devel ## see: https://www.redhat.com/archives/fedora-r-devel-list/2009-March/msg00001.html install -m 664 -p %{SOURCE1} %{buildroot}%{_libdir}/R/library/%{packname} %check %if 0 # 2020-09-10: sh: line 1: 1879370 Segmentation fault (core dumped) LANGUAGE=en _R_CHECK_INTERNALS2_=1 '/usr/lib64/R/bin/R' --vanilla > 'preprocessCore-Ex.Rout' 2>&1 < %ifnarch s390x %{_bindir}/R CMD check %{packname} %endif %endif %files #i386 arch %dir %{_libdir}/R/library/%{packname} %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/preprocessCore_license %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/libs %{_libdir}/R/library/%{packname}/help %files devel %{_libdir}/R/library/%{packname}/include/ %changelog * Thu Aug 25 2022 Tom Callaway - 1.58.0-1 - update to 1.58.0 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering - 1.54.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 1.54.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 1.54.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Mon Jun 14 2021 Tom Callaway - 1.54.0-1 - update to 1.54.0 - Rebuilt for R 4.1.0 * Thu Feb 4 2021 Tom Callaway - 1.52.1-1 - update to 1.52.1 - disable tests * Mon Jan 25 2021 Fedora Release Engineering - 1.50.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Aug 10 2020 Tom Callaway - 1.50.0-5 - rebuild for FlexiBLAS R * Sat Aug 01 2020 Fedora Release Engineering - 1.50.0-4 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 1.50.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Wed Jun 24 2020 Tom Callaway - 1.50.0-2 - use dlsym to access __pthread_get_minstack to avoid dependency issue with GLIBC_PRIVATE (bz1849669, bz1849369) * Mon Jun 8 2020 Tom Callaway - 1.50.0-1 - update to 1.50.0 - rebuild for R 4 * Tue Feb 18 2020 Tom Callaway - 1.48.0-4 - rebuild against R without libRlapack.so - apply upstream change to love openblas * Sat Feb 1 2020 Tom Callaway - 1.48.0-3 - fix FTBFS * Tue Jan 28 2020 Fedora Release Engineering - 1.48.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 7 2019 Tom Callaway - 1.48.0-1 - update to 1.48.0 * Mon Aug 12 2019 Elliott Sales de Andrade - 1.42.0-5 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 1.42.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 1.42.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 1.42.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Wed May 16 2018 Tom Callaway - 1.42.0-1 - update to 1.42.0 * Wed Feb 07 2018 Fedora Release Engineering - 1.38.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Aug 02 2017 Fedora Release Engineering - 1.38.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 1.38.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Wed May 31 2017 Tom Callaway - 1.38.1-1 - update to 1.38.1 * Fri Feb 10 2017 Fedora Release Engineering - 1.26.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Wed Feb 03 2016 Fedora Release Engineering - 1.26.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Tue Jun 16 2015 Fedora Release Engineering - 1.26.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri Aug 15 2014 Fedora Release Engineering - 1.26.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Wed Jul 02 2014 pingou 1.26.1-1 - Update to version 1.26.1 * Fri Jun 06 2014 Fedora Release Engineering - 1.26.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Wed May 7 2014 Tom Callaway 1.26.0-1 - update to 1.26.0 (R 3.1.0) * Mon Jan 27 2014 pingou 1.24.0-1 - Update to version 1.24.0 * Sun Dec 22 2013 Pierre-Yves Chibon - 1.22.0-3 - Add blas-devel and lapack-devel as BR * Fri Aug 02 2013 Fedora Release Engineering - 1.22.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Sun Apr 07 2013 pingou 1.22.0-1 - Update to version 1.22.0 * Wed Feb 13 2013 Fedora Release Engineering - 1.20.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou 1.20.0-1 - Update to version 1.20.0 * Wed Jul 18 2012 Fedora Release Engineering - 1.18.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Apr 26 2012 pingou 1.18.0-1 - Update to version 1.18.0 * Thu Jan 12 2012 Fedora Release Engineering - 1.16.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 09 2011 Tom Callaway 1.16.0-2 - rebuild for R 2.14.0 * Thu Nov 03 2011 pingou 1.16.0-1 - Update to version 1.16.0 * Wed Jun 22 2011 pingou 1.14.0-1 - Update to version 1.14.0 * Mon Feb 07 2011 Fedora Release Engineering - 1.12.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Tue Oct 26 2010 pingou 1.12.0-1 - Update to version 1.12.0 * Sat Jun 05 2010 pingou 1.10.0-1 - Update to version 1.10.0 - Update source0 and URL to a more stable form - Update R and BR to R-core and R-devel - Update to R-2.11.0 * Sat Nov 21 2009 pingou 1.8.0-1 - Update to 1.8.0 - Remove %%post and %%postun - Adapt %%files to R-2.10.0 - Fix BR tex(latex) * Tue Aug 04 2009 pingou 1.6.0-2 - Add the file preprocessCore_license which contains the mail from upstream regarding the license * Sat Aug 01 2009 pingou 1.6.0-1 - initial package for Fedora