Warning: Permanently added '165.192.137.145' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5168138 --chroot fedora-rawhide-s390x --detached Version: 0.62 PID: 16146 Logging PID: 16147 Task: {'appstream': False, 'background': True, 'build_id': 5168138, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '33bdcab4226f5c2a02e7ec7b561e9397017feec6', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bionetgen', 'package_version': '2.8.4-3', 'project_dirname': 'gcc-13-test', 'project_name': 'gcc-13-test', 'project_owner': 'jakub', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/', 'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch', 'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}], 'sandbox': 'jakub/gcc-13-test--jakub', 'source_json': {}, 'source_type': None, 'submitter': 'jakub', 'tags': [], 'task_id': '5168138-fedora-rawhide-s390x', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen /var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/bionetgen', '/var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen'... Running: git checkout 33bdcab4226f5c2a02e7ec7b561e9397017feec6 cmd: ['git', 'checkout', '33bdcab4226f5c2a02e7ec7b561e9397017feec6'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen rc: 0 stdout: stderr: Note: switching to '33bdcab4226f5c2a02e7ec7b561e9397017feec6'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 33bdcab automatic import of bionetgen Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bionetgen-BioNetGen-2.8.4.tar.gz INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.8.4.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/bionetgen/bionetgen-BioNetGen-2.8.4.tar.gz/md5/e26ad465557b02afad362a856dc9135d/bionetgen-BioNetGen-2.8.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 40.0M 100 40.0M 0 0 4793k 0 0:00:08 0:00:08 --:--:-- 8507k INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.8.4.tar.gz Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671793015.894390 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen/bionetgen.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1671793015.894390/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 11 MB/s | 3.6 MB 00:00 Additional repo https_jakub_fedorapeople_org_fe 52 kB/s | 86 kB 00:01 fedora 8.8 MB/s | 59 MB 00:06 Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: dnf noarch 4.14.0-1.fc38 fedora 480 k dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k Installing dependencies: alternatives s390x 1.21-1.fc38 fedora 38 k audit-libs s390x 3.0.9-1.fc38 copr_base 121 k basesystem noarch 11-14.fc37 fedora 7.0 k bash s390x 5.2.9-3.fc38 copr_base 1.8 M bzip2-libs s390x 1.0.8-12.fc37 fedora 42 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils s390x 9.1-8.fc38 fedora 1.1 M coreutils-common s390x 9.1-8.fc38 fedora 2.0 M crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl s390x 7.87.0-1.fc38 fedora 343 k cyrus-sasl-lib s390x 2.1.28-8.fc38 fedora 758 k dbus-libs s390x 1:1.14.4-1.fc38 fedora 152 k dnf-data noarch 4.14.0-1.fc38 fedora 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf s390x 0.188-3.fc38 fedora 196 k elfutils-libs s390x 0.188-3.fc38 fedora 255 k expat s390x 2.5.0-1.fc38 fedora 108 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-common noarch 38-0.6 fedora 21 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs s390x 5.42-4.fc37 fedora 675 k filesystem s390x 3.18-2.fc37 fedora 1.1 M findutils s390x 1:4.9.0-2.fc37 fedora 487 k gawk s390x 5.1.1-4.fc37 fedora 1.0 M gdbm-libs s390x 1:1.23-2.fc37 fedora 56 k glib2 s390x 2.74.1-2.fc38 fedora 2.7 M glibc s390x 2.36.9000-18.fc38 fedora 1.6 M glibc-common s390x 2.36.9000-18.fc38 fedora 306 k glibc-minimal-langpack s390x 2.36.9000-18.fc38 fedora 30 k gmp s390x 1:6.2.1-3.fc37 fedora 284 k gnupg2 s390x 2.3.8-1.fc38 fedora 2.5 M gnutls s390x 3.7.8-9.fc38 fedora 1.0 M gpgme s390x 1.17.1-3.fc38 fedora 205 k grep s390x 3.8-1.fc38 fedora 293 k ima-evm-utils s390x 1.4-6.fc37 fedora 62 k json-c s390x 0.16-3.fc38 fedora 41 k keyutils-libs s390x 1.6.1-5.fc37 fedora 31 k krb5-libs s390x 1.20.1-3.fc38 fedora 706 k libacl s390x 2.3.1-4.fc38 copr_base 25 k libarchive s390x 3.6.1-3.fc38 fedora 394 k libassuan s390x 2.5.5-5.fc37 fedora 64 k libattr s390x 2.5.1-5.fc38 copr_base 19 k libb2 s390x 0.98.1-7.fc37 fedora 26 k libblkid s390x 2.38.1-3.fc38 fedora 103 k libbrotli s390x 1.0.9-9.fc37 fedora 317 k libcap s390x 2.48-5.fc37 fedora 66 k libcap-ng s390x 0.8.3-4.fc38 fedora 32 k libcom_err s390x 1.46.5-3.fc37 fedora 25 k libcomps s390x 0.1.18-4.fc37 fedora 74 k libcurl s390x 7.87.0-1.fc38 fedora 295 k libdnf s390x 0.68.0-1.fc38 fedora 627 k libevent s390x 2.1.12-7.fc37 fedora 252 k libffi s390x 3.4.4-1.fc38 fedora 34 k libfsverity s390x 1.4-8.fc37 fedora 19 k libgcc s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 66 k libgcrypt s390x 1.10.1-6.fc38 fedora 457 k libgomp s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 305 k libgpg-error s390x 1.46-1.fc38 fedora 226 k libidn2 s390x 2.3.4-1.fc38 fedora 161 k libksba s390x 1.6.3-1.fc38 fedora 152 k libmodulemd s390x 2.14.0-4.fc37 fedora 210 k libmount s390x 2.38.1-3.fc38 fedora 132 k libnghttp2 s390x 1.51.0-1.fc38 fedora 73 k libnsl2 s390x 2.0.0-4.fc37 fedora 30 k libpsl s390x 0.21.1-6.fc37 fedora 63 k librepo s390x 1.15.1-1.fc38 fedora 92 k libreport-filesystem noarch 2.17.6-1.fc38 fedora 14 k libselinux s390x 3.4-6.fc38 fedora 85 k libsemanage s390x 3.4-6.fc38 fedora 115 k libsepol s390x 3.4-4.fc38 fedora 302 k libsigsegv s390x 2.14-3.fc37 fedora 27 k libsmartcols s390x 2.38.1-3.fc38 fedora 63 k libsolv s390x 0.7.22-3.fc37 fedora 387 k libssh s390x 0.10.4-2.fc38 fedora 199 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k libtasn1 s390x 4.19.0-1.fc38 fedora 74 k libtirpc s390x 1.3.3-0.fc37 fedora 90 k libunistring s390x 1.0-2.fc37 fedora 547 k libuuid s390x 2.38.1-3.fc38 fedora 27 k libverto s390x 0.3.2-4.fc37 fedora 20 k libxcrypt s390x 4.4.33-5.fc38 fedora 121 k libxml2 s390x 2.10.3-2.fc38 fedora 670 k libyaml s390x 0.2.5-8.fc37 fedora 55 k libzstd s390x 1.5.2-3.fc37 fedora 274 k lua-libs s390x 5.4.4-6.fc38 fedora 129 k lz4-libs s390x 1.9.3-5.fc37 fedora 68 k mpdecimal s390x 2.5.1-4.fc37 fedora 104 k mpfr s390x 4.1.1-2.fc38 fedora 522 k ncurses-base noarch 6.3-5.20221126.fc38 fedora 86 k ncurses-libs s390x 6.3-5.20221126.fc38 fedora 324 k nettle s390x 3.8-2.fc37 fedora 430 k npth s390x 1.6-10.fc38 fedora 24 k openldap s390x 2.6.3-1.fc38 fedora 248 k openssl-libs s390x 1:3.0.5-6.fc38 fedora 1.8 M p11-kit s390x 0.24.1-5.fc38 fedora 378 k p11-kit-trust s390x 0.24.1-5.fc38 fedora 131 k pcre2 s390x 10.40-1.fc37.1 fedora 219 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k popt s390x 1.19-1.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 s390x 3.11.1-1.fc38 fedora 27 k python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k python3-dbus s390x 1.3.2-1.fc38 fedora 156 k python3-distro noarch 1.8.0-1.fc38 fedora 49 k python3-dnf noarch 4.14.0-1.fc38 fedora 607 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k python3-gpg s390x 1.17.1-3.fc38 fedora 288 k python3-hawkey s390x 0.68.0-1.fc38 fedora 99 k python3-libcomps s390x 0.1.18-4.fc37 fedora 47 k python3-libdnf s390x 0.68.0-1.fc38 fedora 738 k python3-libs s390x 3.11.1-1.fc38 fedora 9.5 M python3-rpm s390x 4.18.0-8.fc38 fedora 95 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline s390x 8.2-2.fc38 fedora 213 k rpm s390x 4.18.0-8.fc38 fedora 569 k rpm-build-libs s390x 4.18.0-8.fc38 fedora 92 k rpm-libs s390x 4.18.0-8.fc38 fedora 307 k rpm-sequoia s390x 1.2.0-1.fc38 fedora 960 k rpm-sign-libs s390x 4.18.0-8.fc38 fedora 26 k sed s390x 4.8-11.fc37 fedora 304 k setup noarch 2.14.3-1.fc38 fedora 152 k shadow-utils s390x 2:4.13-3.fc38 fedora 1.2 M sqlite-libs s390x 3.40.0-1.fc38 fedora 651 k systemd-libs s390x 252.4-598.fc38 fedora 591 k tpm2-tss s390x 4.0.0-0.1.rc2.fc38 fedora 630 k tzdata noarch 2022g-1.fc38 fedora 716 k xz-libs s390x 5.2.9-1.fc38 fedora 93 k zchunk-libs s390x 1.2.3-1.fc38 fedora 49 k zlib s390x 1.2.13-1.fc38 fedora 96 k Transaction Summary ========================================================================================================================= Install 137 Packages Total download size: 55 M Installed size: 200 M Downloading Packages: (1/137): libacl-2.3.1-4.fc38.s390x.rpm 276 kB/s | 25 kB 00:00 (2/137): bash-5.2.9-3.fc38.s390x.rpm 18 MB/s | 1.8 MB 00:00 (3/137): audit-libs-3.0.9-1.fc38.s390x.rpm 1.2 MB/s | 121 kB 00:00 (4/137): libattr-2.5.1-5.fc38.s390x.rpm 1.5 MB/s | 19 kB 00:00 (5/137): libgcc-13.0.0-0.4.fc38.s390x.rpm 45 kB/s | 66 kB 00:01 (6/137): libgomp-13.0.0-0.4.fc38.s390x.rpm 162 kB/s | 305 kB 00:01 (7/137): libstdc++-13.0.0-0.4.fc38.s390x.rpm 410 kB/s | 889 kB 00:02 (8/137): basesystem-11-14.fc37.noarch.rpm 7.3 kB/s | 7.0 kB 00:00 (9/137): alternatives-1.21-1.fc38.s390x.rpm 7.5 kB/s | 38 kB 00:05 (10/137): bzip2-libs-1.0.8-12.fc37.s390x.rpm 9.9 kB/s | 42 kB 00:04 (11/137): ca-certificates-2022.2.54-5.fc37.noar 179 kB/s | 829 kB 00:04 (12/137): crypto-policies-20221215-1.gita4c31a3 524 kB/s | 90 kB 00:00 (13/137): coreutils-9.1-8.fc38.s390x.rpm 852 kB/s | 1.1 MB 00:01 (14/137): coreutils-common-9.1-8.fc38.s390x.rpm 1.5 MB/s | 2.0 MB 00:01 (15/137): curl-7.87.0-1.fc38.s390x.rpm 2.0 MB/s | 343 kB 00:00 (16/137): cyrus-sasl-lib-2.1.28-8.fc38.s390x.rp 3.9 MB/s | 758 kB 00:00 (17/137): dbus-libs-1.14.4-1.fc38.s390x.rpm 896 kB/s | 152 kB 00:00 (18/137): dnf-4.14.0-1.fc38.noarch.rpm 2.7 MB/s | 480 kB 00:00 (19/137): dnf-data-4.14.0-1.fc38.noarch.rpm 233 kB/s | 43 kB 00:00 (20/137): dnf-plugins-core-4.3.1-1.fc38.noarch. 204 kB/s | 34 kB 00:00 (21/137): elfutils-default-yama-scope-0.188-3.f 92 kB/s | 15 kB 00:00 (22/137): elfutils-libelf-0.188-3.fc38.s390x.rp 1.0 MB/s | 196 kB 00:00 (23/137): elfutils-libs-0.188-3.fc38.s390x.rpm 1.5 MB/s | 255 kB 00:00 (24/137): expat-2.5.0-1.fc38.s390x.rpm 638 kB/s | 108 kB 00:00 (25/137): fedora-gpg-keys-38-0.3.noarch.rpm 684 kB/s | 125 kB 00:00 (26/137): fedora-release-38-0.6.noarch.rpm 64 kB/s | 11 kB 00:00 (27/137): fedora-release-common-38-0.6.noarch.r 126 kB/s | 21 kB 00:00 (28/137): fedora-repos-38-0.3.noarch.rpm 60 kB/s | 10 kB 00:00 (29/137): fedora-release-identity-basic-38-0.6. 61 kB/s | 11 kB 00:00 (30/137): fedora-repos-rawhide-38-0.3.noarch.rp 58 kB/s | 9.7 kB 00:00 (31/137): file-libs-5.42-4.fc37.s390x.rpm 3.8 MB/s | 675 kB 00:00 (32/137): findutils-4.9.0-2.fc37.s390x.rpm 2.7 MB/s | 487 kB 00:00 (33/137): filesystem-3.18-2.fc37.s390x.rpm 5.5 MB/s | 1.1 MB 00:00 (34/137): gawk-5.1.1-4.fc37.s390x.rpm 5.6 MB/s | 1.0 MB 00:00 (35/137): gdbm-libs-1.23-2.fc37.s390x.rpm 334 kB/s | 56 kB 00:00 (36/137): glibc-common-2.36.9000-18.fc38.s390x. 1.7 MB/s | 306 kB 00:00 (37/137): glibc-2.36.9000-18.fc38.s390x.rpm 8.8 MB/s | 1.6 MB 00:00 (38/137): glib2-2.74.1-2.fc38.s390x.rpm 7.3 MB/s | 2.7 MB 00:00 (39/137): glibc-minimal-langpack-2.36.9000-18.f 179 kB/s | 30 kB 00:00 (40/137): gmp-6.2.1-3.fc37.s390x.rpm 1.6 MB/s | 284 kB 00:00 (41/137): gnupg2-2.3.8-1.fc38.s390x.rpm 12 MB/s | 2.5 MB 00:00 (42/137): gpgme-1.17.1-3.fc38.s390x.rpm 1.2 MB/s | 205 kB 00:00 (43/137): grep-3.8-1.fc38.s390x.rpm 1.6 MB/s | 293 kB 00:00 (44/137): gnutls-3.7.8-9.fc38.s390x.rpm 2.9 MB/s | 1.0 MB 00:00 (45/137): ima-evm-utils-1.4-6.fc37.s390x.rpm 368 kB/s | 62 kB 00:00 (46/137): json-c-0.16-3.fc38.s390x.rpm 223 kB/s | 41 kB 00:00 (47/137): keyutils-libs-1.6.1-5.fc37.s390x.rpm 184 kB/s | 31 kB 00:00 (48/137): krb5-libs-1.20.1-3.fc38.s390x.rpm 3.9 MB/s | 706 kB 00:00 (49/137): libarchive-3.6.1-3.fc38.s390x.rpm 2.1 MB/s | 394 kB 00:00 (50/137): libassuan-2.5.5-5.fc37.s390x.rpm 380 kB/s | 64 kB 00:00 (51/137): libb2-0.98.1-7.fc37.s390x.rpm 153 kB/s | 26 kB 00:00 (52/137): libblkid-2.38.1-3.fc38.s390x.rpm 564 kB/s | 103 kB 00:00 (53/137): libbrotli-1.0.9-9.fc37.s390x.rpm 1.8 MB/s | 317 kB 00:00 (54/137): libcap-2.48-5.fc37.s390x.rpm 392 kB/s | 66 kB 00:00 (55/137): libcap-ng-0.8.3-4.fc38.s390x.rpm 174 kB/s | 32 kB 00:00 (56/137): libcom_err-1.46.5-3.fc37.s390x.rpm 150 kB/s | 25 kB 00:00 (57/137): libcomps-0.1.18-4.fc37.s390x.rpm 438 kB/s | 74 kB 00:00 (58/137): libcurl-7.87.0-1.fc38.s390x.rpm 1.6 MB/s | 295 kB 00:00 (59/137): libdnf-0.68.0-1.fc38.s390x.rpm 3.5 MB/s | 627 kB 00:00 (60/137): libevent-2.1.12-7.fc37.s390x.rpm 1.4 MB/s | 252 kB 00:00 (61/137): libfsverity-1.4-8.fc37.s390x.rpm 111 kB/s | 19 kB 00:00 (62/137): libffi-3.4.4-1.fc38.s390x.rpm 189 kB/s | 34 kB 00:00 (63/137): libgcrypt-1.10.1-6.fc38.s390x.rpm 2.6 MB/s | 457 kB 00:00 (64/137): libgpg-error-1.46-1.fc38.s390x.rpm 1.3 MB/s | 226 kB 00:00 (65/137): libksba-1.6.3-1.fc38.s390x.rpm 896 kB/s | 152 kB 00:00 (66/137): libidn2-2.3.4-1.fc38.s390x.rpm 877 kB/s | 161 kB 00:00 (67/137): libmodulemd-2.14.0-4.fc37.s390x.rpm 1.2 MB/s | 210 kB 00:00 (68/137): libmount-2.38.1-3.fc38.s390x.rpm 775 kB/s | 132 kB 00:00 (69/137): libnghttp2-1.51.0-1.fc38.s390x.rpm 402 kB/s | 73 kB 00:00 (70/137): libnsl2-2.0.0-4.fc37.s390x.rpm 176 kB/s | 30 kB 00:00 (71/137): libpsl-0.21.1-6.fc37.s390x.rpm 369 kB/s | 63 kB 00:00 (72/137): librepo-1.15.1-1.fc38.s390x.rpm 503 kB/s | 92 kB 00:00 (73/137): libreport-filesystem-2.17.6-1.fc38.no 79 kB/s | 14 kB 00:00 (74/137): libselinux-3.4-6.fc38.s390x.rpm 505 kB/s | 85 kB 00:00 (75/137): libsemanage-3.4-6.fc38.s390x.rpm 612 kB/s | 115 kB 00:00 (76/137): libsepol-3.4-4.fc38.s390x.rpm 1.7 MB/s | 302 kB 00:00 (77/137): libsigsegv-2.14-3.fc37.s390x.rpm 159 kB/s | 27 kB 00:00 (78/137): 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00:00 (108/137): python-setuptools-wheel-65.5.1-1.fc3 3.9 MB/s | 715 kB 00:00 (109/137): python3-3.11.1-1.fc38.s390x.rpm 144 kB/s | 27 kB 00:00 (110/137): python3-dateutil-2.8.2-4.fc37.noarch 2.1 MB/s | 361 kB 00:00 (111/137): python3-dbus-1.3.2-1.fc38.s390x.rpm 918 kB/s | 156 kB 00:00 (112/137): python3-distro-1.8.0-1.fc38.noarch.r 271 kB/s | 49 kB 00:00 (113/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 3.4 MB/s | 607 kB 00:00 (114/137): python3-dnf-plugins-core-4.3.1-1.fc3 1.6 MB/s | 277 kB 00:00 (115/137): python3-gpg-1.17.1-3.fc38.s390x.rpm 1.5 MB/s | 288 kB 00:00 (116/137): python3-hawkey-0.68.0-1.fc38.s390x.r 588 kB/s | 99 kB 00:00 (117/137): python3-libcomps-0.1.18-4.fc37.s390x 279 kB/s | 47 kB 00:00 (118/137): python3-libdnf-0.68.0-1.fc38.s390x.r 3.8 MB/s | 738 kB 00:00 (119/137): python3-rpm-4.18.0-8.fc38.s390x.rpm 555 kB/s | 95 kB 00:00 (120/137): python3-six-1.16.0-8.fc37.noarch.rpm 231 kB/s | 42 kB 00:00 (121/137): readline-8.2-2.fc38.s390x.rpm 1.2 MB/s | 213 kB 00:00 (122/137): rpm-4.18.0-8.fc38.s390x.rpm 3.0 MB/s | 569 kB 00:00 (123/137): rpm-build-libs-4.18.0-8.fc38.s390x.r 539 kB/s | 92 kB 00:00 (124/137): rpm-libs-4.18.0-8.fc38.s390x.rpm 1.6 MB/s | 307 kB 00:00 (125/137): python3-libs-3.11.1-1.fc38.s390x.rpm 14 MB/s | 9.5 MB 00:00 (126/137): rpm-sequoia-1.2.0-1.fc38.s390x.rpm 5.2 MB/s | 960 kB 00:00 (127/137): rpm-sign-libs-4.18.0-8.fc38.s390x.rp 145 kB/s | 26 kB 00:00 (128/137): sed-4.8-11.fc37.s390x.rpm 1.7 MB/s | 304 kB 00:00 (129/137): setup-2.14.3-1.fc38.noarch.rpm 896 kB/s | 152 kB 00:00 (130/137): shadow-utils-4.13-3.fc38.s390x.rpm 6.4 MB/s | 1.2 MB 00:00 (131/137): sqlite-libs-3.40.0-1.fc38.s390x.rpm 3.6 MB/s | 651 kB 00:00 (132/137): systemd-libs-252.4-598.fc38.s390x.rp 3.2 MB/s | 591 kB 00:00 (133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.s390x.rp 3.3 MB/s | 630 kB 00:00 (134/137): xz-libs-5.2.9-1.fc38.s390x.rpm 542 kB/s | 93 kB 00:00 (135/137): tzdata-2022g-1.fc38.noarch.rpm 4.0 MB/s | 716 kB 00:00 (136/137): zchunk-libs-1.2.3-1.fc38.s390x.rpm 268 kB/s | 49 kB 00:00 (137/137): zlib-1.2.13-1.fc38.s390x.rpm 567 kB/s | 96 kB 00:00 -------------------------------------------------------------------------------- Total 3.4 MB/s | 55 MB 00:16 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.s390x 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.s390x 1/137 Running scriptlet: libgcc-13.0.0-0.4.fc38.s390x 1/137 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Installing : tzdata-2022g-1.fc38.noarch 3/137 Installing : fedora-release-identity-basic-38-0.6.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 7/137 Installing : ncurses-base-6.3-5.20221126.fc38.noarch 8/137 Installing : libssh-config-0.10.4-2.fc38.noarch 9/137 Installing : libreport-filesystem-2.17.6-1.fc38.noarch 10/137 Installing : dnf-data-4.14.0-1.fc38.noarch 11/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-38-0.3.noarch 12/137 Installing : 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gpgme-1.17.1-3.fc38.s390x 122/137 Installing : librepo-1.15.1-1.fc38.s390x 123/137 Installing : libdnf-0.68.0-1.fc38.s390x 124/137 Installing : python3-libdnf-0.68.0-1.fc38.s390x 125/137 Installing : python3-hawkey-0.68.0-1.fc38.s390x 126/137 Installing : python3-gpg-1.17.1-3.fc38.s390x 127/137 Installing : curl-7.87.0-1.fc38.s390x 128/137 Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.s390x 129/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-0.1.rc2.fc38.s390x 129/137 Installing : ima-evm-utils-1.4-6.fc37.s390x 130/137 Installing : rpm-sign-libs-4.18.0-8.fc38.s390x 131/137 Installing : python3-rpm-4.18.0-8.fc38.s390x 132/137 Installing : python3-dnf-4.14.0-1.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/137 Installing : dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-8.fc38.s390x 137/137 Installing : rpm-4.18.0-8.fc38.s390x 137/137 Running scriptlet: filesystem-3.18-2.fc37.s390x 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-8.fc38.s390x 137/137 Verifying : audit-libs-3.0.9-1.fc38.s390x 1/137 Verifying : bash-5.2.9-3.fc38.s390x 2/137 Verifying : libacl-2.3.1-4.fc38.s390x 3/137 Verifying : libattr-2.5.1-5.fc38.s390x 4/137 Verifying : libgcc-13.0.0-0.4.fc38.s390x 5/137 Verifying : libgomp-13.0.0-0.4.fc38.s390x 6/137 Verifying : libstdc++-13.0.0-0.4.fc38.s390x 7/137 Verifying : alternatives-1.21-1.fc38.s390x 8/137 Verifying : basesystem-11-14.fc37.noarch 9/137 Verifying : bzip2-libs-1.0.8-12.fc37.s390x 10/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 11/137 Verifying : coreutils-9.1-8.fc38.s390x 12/137 Verifying : coreutils-common-9.1-8.fc38.s390x 13/137 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 14/137 Verifying : curl-7.87.0-1.fc38.s390x 15/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.s390x 16/137 Verifying : dbus-libs-1:1.14.4-1.fc38.s390x 17/137 Verifying : dnf-4.14.0-1.fc38.noarch 18/137 Verifying : dnf-data-4.14.0-1.fc38.noarch 19/137 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 20/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 21/137 Verifying : elfutils-libelf-0.188-3.fc38.s390x 22/137 Verifying : elfutils-libs-0.188-3.fc38.s390x 23/137 Verifying : expat-2.5.0-1.fc38.s390x 24/137 Verifying : fedora-gpg-keys-38-0.3.noarch 25/137 Verifying : fedora-release-38-0.6.noarch 26/137 Verifying : fedora-release-common-38-0.6.noarch 27/137 Verifying : fedora-release-identity-basic-38-0.6.noarch 28/137 Verifying : fedora-repos-38-0.3.noarch 29/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 30/137 Verifying : file-libs-5.42-4.fc37.s390x 31/137 Verifying : filesystem-3.18-2.fc37.s390x 32/137 Verifying : findutils-1:4.9.0-2.fc37.s390x 33/137 Verifying : gawk-5.1.1-4.fc37.s390x 34/137 Verifying : gdbm-libs-1:1.23-2.fc37.s390x 35/137 Verifying : glib2-2.74.1-2.fc38.s390x 36/137 Verifying : glibc-2.36.9000-18.fc38.s390x 37/137 Verifying : glibc-common-2.36.9000-18.fc38.s390x 38/137 Verifying : glibc-minimal-langpack-2.36.9000-18.fc38.s390x 39/137 Verifying : gmp-1:6.2.1-3.fc37.s390x 40/137 Verifying : gnupg2-2.3.8-1.fc38.s390x 41/137 Verifying : gnutls-3.7.8-9.fc38.s390x 42/137 Verifying : gpgme-1.17.1-3.fc38.s390x 43/137 Verifying : grep-3.8-1.fc38.s390x 44/137 Verifying : ima-evm-utils-1.4-6.fc37.s390x 45/137 Verifying : json-c-0.16-3.fc38.s390x 46/137 Verifying : keyutils-libs-1.6.1-5.fc37.s390x 47/137 Verifying : krb5-libs-1.20.1-3.fc38.s390x 48/137 Verifying : libarchive-3.6.1-3.fc38.s390x 49/137 Verifying : libassuan-2.5.5-5.fc37.s390x 50/137 Verifying : libb2-0.98.1-7.fc37.s390x 51/137 Verifying : libblkid-2.38.1-3.fc38.s390x 52/137 Verifying : libbrotli-1.0.9-9.fc37.s390x 53/137 Verifying : libcap-2.48-5.fc37.s390x 54/137 Verifying : libcap-ng-0.8.3-4.fc38.s390x 55/137 Verifying : libcom_err-1.46.5-3.fc37.s390x 56/137 Verifying : libcomps-0.1.18-4.fc37.s390x 57/137 Verifying : libcurl-7.87.0-1.fc38.s390x 58/137 Verifying : libdnf-0.68.0-1.fc38.s390x 59/137 Verifying : libevent-2.1.12-7.fc37.s390x 60/137 Verifying : libffi-3.4.4-1.fc38.s390x 61/137 Verifying : libfsverity-1.4-8.fc37.s390x 62/137 Verifying : libgcrypt-1.10.1-6.fc38.s390x 63/137 Verifying : libgpg-error-1.46-1.fc38.s390x 64/137 Verifying : libidn2-2.3.4-1.fc38.s390x 65/137 Verifying : libksba-1.6.3-1.fc38.s390x 66/137 Verifying : libmodulemd-2.14.0-4.fc37.s390x 67/137 Verifying : libmount-2.38.1-3.fc38.s390x 68/137 Verifying : libnghttp2-1.51.0-1.fc38.s390x 69/137 Verifying : libnsl2-2.0.0-4.fc37.s390x 70/137 Verifying : libpsl-0.21.1-6.fc37.s390x 71/137 Verifying : librepo-1.15.1-1.fc38.s390x 72/137 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 73/137 Verifying : libselinux-3.4-6.fc38.s390x 74/137 Verifying : libsemanage-3.4-6.fc38.s390x 75/137 Verifying : libsepol-3.4-4.fc38.s390x 76/137 Verifying : libsigsegv-2.14-3.fc37.s390x 77/137 Verifying : libsmartcols-2.38.1-3.fc38.s390x 78/137 Verifying : libsolv-0.7.22-3.fc37.s390x 79/137 Verifying : libssh-0.10.4-2.fc38.s390x 80/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 81/137 Verifying : libtasn1-4.19.0-1.fc38.s390x 82/137 Verifying : libtirpc-1.3.3-0.fc37.s390x 83/137 Verifying : libunistring-1.0-2.fc37.s390x 84/137 Verifying : libuuid-2.38.1-3.fc38.s390x 85/137 Verifying : libverto-0.3.2-4.fc37.s390x 86/137 Verifying : libxcrypt-4.4.33-5.fc38.s390x 87/137 Verifying : libxml2-2.10.3-2.fc38.s390x 88/137 Verifying : libyaml-0.2.5-8.fc37.s390x 89/137 Verifying : libzstd-1.5.2-3.fc37.s390x 90/137 Verifying : lua-libs-5.4.4-6.fc38.s390x 91/137 Verifying : lz4-libs-1.9.3-5.fc37.s390x 92/137 Verifying : mpdecimal-2.5.1-4.fc37.s390x 93/137 Verifying : mpfr-4.1.1-2.fc38.s390x 94/137 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 95/137 Verifying : ncurses-libs-6.3-5.20221126.fc38.s390x 96/137 Verifying : nettle-3.8-2.fc37.s390x 97/137 Verifying : npth-1.6-10.fc38.s390x 98/137 Verifying : openldap-2.6.3-1.fc38.s390x 99/137 Verifying : openssl-libs-1:3.0.5-6.fc38.s390x 100/137 Verifying : p11-kit-0.24.1-5.fc38.s390x 101/137 Verifying : p11-kit-trust-0.24.1-5.fc38.s390x 102/137 Verifying : pcre2-10.40-1.fc37.1.s390x 103/137 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 104/137 Verifying : popt-1.19-1.fc38.s390x 105/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 106/137 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 107/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 108/137 Verifying : python3-3.11.1-1.fc38.s390x 109/137 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 110/137 Verifying : python3-dbus-1.3.2-1.fc38.s390x 111/137 Verifying : python3-distro-1.8.0-1.fc38.noarch 112/137 Verifying : python3-dnf-4.14.0-1.fc38.noarch 113/137 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 114/137 Verifying : python3-gpg-1.17.1-3.fc38.s390x 115/137 Verifying : python3-hawkey-0.68.0-1.fc38.s390x 116/137 Verifying : python3-libcomps-0.1.18-4.fc37.s390x 117/137 Verifying : python3-libdnf-0.68.0-1.fc38.s390x 118/137 Verifying : python3-libs-3.11.1-1.fc38.s390x 119/137 Verifying : python3-rpm-4.18.0-8.fc38.s390x 120/137 Verifying : python3-six-1.16.0-8.fc37.noarch 121/137 Verifying : readline-8.2-2.fc38.s390x 122/137 Verifying : rpm-4.18.0-8.fc38.s390x 123/137 Verifying : rpm-build-libs-4.18.0-8.fc38.s390x 124/137 Verifying : rpm-libs-4.18.0-8.fc38.s390x 125/137 Verifying : rpm-sequoia-1.2.0-1.fc38.s390x 126/137 Verifying : rpm-sign-libs-4.18.0-8.fc38.s390x 127/137 Verifying : sed-4.8-11.fc37.s390x 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.s390x 130/137 Verifying : sqlite-libs-3.40.0-1.fc38.s390x 131/137 Verifying : systemd-libs-252.4-598.fc38.s390x 132/137 Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.s390x 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.s390x 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.s390x 136/137 Verifying : zlib-1.2.13-1.fc38.s390x 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.s390x audit-libs-3.0.9-1.fc38.s390x basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.s390x bzip2-libs-1.0.8-12.fc37.s390x ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.s390x coreutils-common-9.1-8.fc38.s390x crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.s390x cyrus-sasl-lib-2.1.28-8.fc38.s390x dbus-libs-1:1.14.4-1.fc38.s390x dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.s390x elfutils-libs-0.188-3.fc38.s390x expat-2.5.0-1.fc38.s390x fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc37.s390x filesystem-3.18-2.fc37.s390x findutils-1:4.9.0-2.fc37.s390x gawk-5.1.1-4.fc37.s390x gdbm-libs-1:1.23-2.fc37.s390x glib2-2.74.1-2.fc38.s390x glibc-2.36.9000-18.fc38.s390x glibc-common-2.36.9000-18.fc38.s390x glibc-minimal-langpack-2.36.9000-18.fc38.s390x gmp-1:6.2.1-3.fc37.s390x gnupg2-2.3.8-1.fc38.s390x gnutls-3.7.8-9.fc38.s390x gpgme-1.17.1-3.fc38.s390x grep-3.8-1.fc38.s390x ima-evm-utils-1.4-6.fc37.s390x json-c-0.16-3.fc38.s390x keyutils-libs-1.6.1-5.fc37.s390x krb5-libs-1.20.1-3.fc38.s390x libacl-2.3.1-4.fc38.s390x libarchive-3.6.1-3.fc38.s390x libassuan-2.5.5-5.fc37.s390x libattr-2.5.1-5.fc38.s390x libb2-0.98.1-7.fc37.s390x libblkid-2.38.1-3.fc38.s390x libbrotli-1.0.9-9.fc37.s390x libcap-2.48-5.fc37.s390x libcap-ng-0.8.3-4.fc38.s390x libcom_err-1.46.5-3.fc37.s390x libcomps-0.1.18-4.fc37.s390x libcurl-7.87.0-1.fc38.s390x libdnf-0.68.0-1.fc38.s390x libevent-2.1.12-7.fc37.s390x libffi-3.4.4-1.fc38.s390x libfsverity-1.4-8.fc37.s390x libgcc-13.0.0-0.4.fc38.s390x libgcrypt-1.10.1-6.fc38.s390x libgomp-13.0.0-0.4.fc38.s390x libgpg-error-1.46-1.fc38.s390x libidn2-2.3.4-1.fc38.s390x libksba-1.6.3-1.fc38.s390x libmodulemd-2.14.0-4.fc37.s390x libmount-2.38.1-3.fc38.s390x libnghttp2-1.51.0-1.fc38.s390x libnsl2-2.0.0-4.fc37.s390x libpsl-0.21.1-6.fc37.s390x librepo-1.15.1-1.fc38.s390x libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.4-6.fc38.s390x libsemanage-3.4-6.fc38.s390x libsepol-3.4-4.fc38.s390x libsigsegv-2.14-3.fc37.s390x libsmartcols-2.38.1-3.fc38.s390x libsolv-0.7.22-3.fc37.s390x libssh-0.10.4-2.fc38.s390x libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.s390x libtasn1-4.19.0-1.fc38.s390x libtirpc-1.3.3-0.fc37.s390x libunistring-1.0-2.fc37.s390x libuuid-2.38.1-3.fc38.s390x libverto-0.3.2-4.fc37.s390x libxcrypt-4.4.33-5.fc38.s390x libxml2-2.10.3-2.fc38.s390x libyaml-0.2.5-8.fc37.s390x libzstd-1.5.2-3.fc37.s390x lua-libs-5.4.4-6.fc38.s390x lz4-libs-1.9.3-5.fc37.s390x mpdecimal-2.5.1-4.fc37.s390x mpfr-4.1.1-2.fc38.s390x ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.s390x nettle-3.8-2.fc37.s390x npth-1.6-10.fc38.s390x openldap-2.6.3-1.fc38.s390x openssl-libs-1:3.0.5-6.fc38.s390x p11-kit-0.24.1-5.fc38.s390x p11-kit-trust-0.24.1-5.fc38.s390x pcre2-10.40-1.fc37.1.s390x pcre2-syntax-10.40-1.fc37.1.noarch popt-1.19-1.fc38.s390x publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.s390x python3-dateutil-1:2.8.2-4.fc37.noarch python3-dbus-1.3.2-1.fc38.s390x python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.1-3.fc38.s390x python3-hawkey-0.68.0-1.fc38.s390x python3-libcomps-0.1.18-4.fc37.s390x python3-libdnf-0.68.0-1.fc38.s390x python3-libs-3.11.1-1.fc38.s390x python3-rpm-4.18.0-8.fc38.s390x python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.s390x rpm-4.18.0-8.fc38.s390x rpm-build-libs-4.18.0-8.fc38.s390x rpm-libs-4.18.0-8.fc38.s390x rpm-sequoia-1.2.0-1.fc38.s390x rpm-sign-libs-4.18.0-8.fc38.s390x sed-4.8-11.fc37.s390x setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.s390x sqlite-libs-3.40.0-1.fc38.s390x systemd-libs-252.4-598.fc38.s390x tpm2-tss-4.0.0-0.1.rc2.fc38.s390x tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.s390x zchunk-libs-1.2.3-1.fc38.s390x zlib-1.2.13-1.fc38.s390x Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 5.4 kB/s | 3.0 kB 00:00 Copr repository 459 kB/s | 3.6 MB 00:07 Additional repo https_jakub_fedorapeople_org_fe 1.9 kB/s | 3.0 kB 00:01 fedora 7.9 kB/s | 6.6 kB 00:00 Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing group/module packages: bash s390x 5.2.9-3.fc38 copr_base 1.8 M bzip2 s390x 1.0.8-12.fc37 fedora 51 k coreutils s390x 9.1-8.fc38 fedora 1.1 M cpio s390x 2.13-13.fc38 fedora 274 k diffutils s390x 3.8-3.fc37 fedora 377 k fedora-release-common noarch 38-0.6 fedora 21 k findutils s390x 1:4.9.0-2.fc37 fedora 487 k gawk s390x 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack s390x 2.36.9000-18.fc38 fedora 30 k grep s390x 3.8-1.fc38 fedora 293 k gzip s390x 1.12-2.fc37 fedora 166 k info s390x 7.0.1-1.fc38 fedora 180 k patch s390x 2.7.6-17.fc37 fedora 122 k redhat-rpm-config noarch 235-1.fc38 fedora 80 k rpm-build s390x 4.18.0-8.fc38 fedora 76 k sed s390x 4.8-11.fc37 fedora 304 k shadow-utils s390x 2:4.13-3.fc38 fedora 1.2 M tar s390x 2:1.34-5.fc38 fedora 876 k unzip s390x 6.0-58.fc38 fedora 177 k util-linux s390x 2.38.1-3.fc38 fedora 2.3 M which s390x 2.21-36.fc38 fedora 42 k xz s390x 5.2.9-1.fc38 fedora 306 k Installing dependencies: alternatives s390x 1.21-1.fc38 fedora 38 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs s390x 3.0.9-1.fc38 copr_base 121 k authselect s390x 1.4.2-1.fc38 copr_base 139 k authselect-libs s390x 1.4.2-1.fc38 copr_base 235 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils s390x 2.39-6.fc38 fedora 5.5 M binutils-gold s390x 2.39-6.fc38 fedora 863 k bzip2-libs s390x 1.0.8-12.fc37 fedora 42 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common s390x 9.1-8.fc38 fedora 2.0 M cracklib s390x 2.9.7-30.fc38 fedora 92 k crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl s390x 7.87.0-1.fc38 fedora 343 k cyrus-sasl-lib s390x 2.1.28-8.fc38 fedora 758 k debugedit s390x 5.0-5.fc37 fedora 76 k dwz s390x 0.15-1.fc38 fedora 132 k ed s390x 1.18-2.fc37 fedora 78 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils s390x 0.188-3.fc38 fedora 525 k elfutils-debuginfod-client s390x 0.188-3.fc38 fedora 40 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf s390x 0.188-3.fc38 fedora 196 k elfutils-libs s390x 0.188-3.fc38 fedora 255 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file s390x 5.42-4.fc37 fedora 48 k file-libs s390x 5.42-4.fc37 fedora 675 k filesystem s390x 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal s390x 12.1-10.fc38 fedora 3.3 M gdbm-libs s390x 1:1.23-2.fc37 fedora 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc s390x 2.36.9000-18.fc38 fedora 1.6 M glibc-common s390x 2.36.9000-18.fc38 fedora 306 k glibc-gconv-extra s390x 2.36.9000-18.fc38 fedora 1.6 M gmp s390x 1:6.2.1-3.fc37 fedora 284 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson s390x 2.13.1-5.fc37 fedora 42 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs s390x 1.6.1-5.fc37 fedora 31 k krb5-libs s390x 1.20.1-3.fc38 fedora 706 k libacl s390x 2.3.1-4.fc38 copr_base 25 k libarchive s390x 3.6.1-3.fc38 fedora 394 k libattr s390x 2.5.1-5.fc38 copr_base 19 k libblkid s390x 2.38.1-3.fc38 fedora 103 k libbrotli s390x 1.0.9-9.fc37 fedora 317 k libcap s390x 2.48-5.fc37 fedora 66 k libcap-ng s390x 0.8.3-4.fc38 fedora 32 k libcom_err s390x 1.46.5-3.fc37 fedora 25 k libcurl s390x 7.87.0-1.fc38 fedora 295 k libdb s390x 5.3.28-54.fc38 fedora 727 k libeconf s390x 0.4.0-4.fc37 fedora 26 k libevent s390x 2.1.12-7.fc37 fedora 252 k libfdisk s390x 2.38.1-3.fc38 fedora 156 k libffi s390x 3.4.4-1.fc38 fedora 34 k libgcc s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 66 k libgomp s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 305 k libidn2 s390x 2.3.4-1.fc38 fedora 161 k libmount s390x 2.38.1-3.fc38 fedora 132 k libnghttp2 s390x 1.51.0-1.fc38 fedora 73 k libnsl2 s390x 2.0.0-4.fc37 fedora 30 k libpkgconf s390x 1.8.0-3.fc37 fedora 34 k libpsl s390x 0.21.1-6.fc37 fedora 63 k libpwquality s390x 1.4.4-11.fc37 fedora 116 k libselinux s390x 3.4-6.fc38 fedora 85 k libsemanage s390x 3.4-6.fc38 fedora 115 k libsepol s390x 3.4-4.fc38 fedora 302 k libsigsegv s390x 2.14-3.fc37 fedora 27 k libsmartcols s390x 2.38.1-3.fc38 fedora 63 k libssh s390x 0.10.4-2.fc38 fedora 199 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 889 k libtasn1 s390x 4.19.0-1.fc38 fedora 74 k libtirpc s390x 1.3.3-0.fc37 fedora 90 k libunistring s390x 1.0-2.fc37 fedora 547 k libutempter s390x 1.2.1-7.fc37 fedora 26 k libuuid s390x 2.38.1-3.fc38 fedora 27 k libverto s390x 0.3.2-4.fc37 fedora 20 k libxcrypt s390x 4.4.33-5.fc38 fedora 121 k libxml2 s390x 2.10.3-2.fc38 fedora 670 k libzstd s390x 1.5.2-3.fc37 fedora 274 k lua-libs s390x 5.4.4-6.fc38 fedora 129 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs s390x 1.9.3-5.fc37 fedora 68 k mpfr s390x 4.1.1-2.fc38 fedora 522 k ncurses-base noarch 6.3-5.20221126.fc38 fedora 86 k ncurses-libs s390x 6.3-5.20221126.fc38 fedora 324 k nettle s390x 3.8-2.fc37 fedora 430 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap s390x 2.6.3-1.fc38 fedora 248 k openssl-libs s390x 1:3.0.5-6.fc38 fedora 1.8 M p11-kit s390x 0.24.1-5.fc38 fedora 378 k p11-kit-trust s390x 0.24.1-5.fc38 fedora 131 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam s390x 1.5.2-15.fc38 fedora 554 k pam-libs s390x 1.5.2-15.fc38 fedora 56 k pcre2 s390x 10.40-1.fc37.1 fedora 219 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k pkgconf s390x 1.8.0-3.fc37 fedora 41 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config s390x 1.8.0-3.fc37 fedora 10 k popt s390x 1.19-1.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-srpm-macros noarch 3.11-6.fc38 fedora 25 k qt5-srpm-macros noarch 5.15.7-1.fc38 fedora 7.9 k readline s390x 8.2-2.fc38 fedora 213 k rpm s390x 4.18.0-8.fc38 fedora 569 k rpm-build-libs s390x 4.18.0-8.fc38 fedora 92 k rpm-libs s390x 4.18.0-8.fc38 fedora 307 k rpm-sequoia s390x 1.2.0-1.fc38 fedora 960 k rpmautospec-rpm-macros noarch 0.3.1-1.fc38 fedora 8.8 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.3-1.fc38 fedora 152 k sqlite-libs s390x 3.40.0-1.fc38 fedora 651 k systemd-libs s390x 252.4-598.fc38 fedora 591 k tzdata noarch 2022g-1.fc38 fedora 716 k util-linux-core s390x 2.38.1-3.fc38 fedora 462 k xxhash-libs s390x 0.8.1-3.fc37 fedora 36 k xz-libs s390x 5.2.9-1.fc38 fedora 93 k zip s390x 3.0-35.fc38 fedora 261 k zlib s390x 1.2.13-1.fc38 fedora 96 k zstd s390x 1.5.2-3.fc37 fedora 410 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================= Install 153 Packages Total size: 51 M Installed size: 181 M Downloading Packages: [SKIPPED] audit-libs-3.0.9-1.fc38.s390x.rpm: Already downloaded [SKIPPED] authselect-1.4.2-1.fc38.s390x.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-1.fc38.s390x.rpm: Already downloaded [SKIPPED] bash-5.2.9-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc38.s390x.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc38.s390x.rpm: Already downloaded [SKIPPED] libgcc-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] libgomp-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] libstdc++-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] alternatives-1.21-1.fc38.s390x.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] binutils-2.39-6.fc38.s390x.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-6.fc38.s390x.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.s390x.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.s390x.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-8.fc38.s390x.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-8.fc38.s390x.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.s390x.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.s390x.rpm: Already downloaded [SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.87.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.s390x.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.s390x.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.s390x.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.s390x.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc37.s390x.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.s390x.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.s390x.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.s390x.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.s390x.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] file-5.42-4.fc37.s390x.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc37.s390x.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.s390x.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.s390x.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.s390x.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-10.fc38.s390x.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc37.s390x.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-18.fc38.s390x.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-18.fc38.s390x.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-18.fc38.s390x.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-18.fc38.s390x.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.s390x.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] grep-3.8-1.fc38.s390x.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc37.s390x.rpm: Already downloaded [SKIPPED] info-7.0.1-1.fc38.s390x.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc37.s390x.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.s390x.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc37.s390x.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.s390x.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-4.fc38.s390x.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.s390x.rpm: Already downloaded [SKIPPED] libcurl-7.87.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] libdb-5.3.28-54.fc38.s390x.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.s390x.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc37.s390x.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libffi-3.4.4-1.fc38.s390x.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.s390x.rpm: Already downloaded [SKIPPED] libmount-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libnghttp2-1.51.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.s390x.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.s390x.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc37.s390x.rpm: Already downloaded [SKIPPED] libpwquality-1.4.4-11.fc37.s390x.rpm: Already downloaded [SKIPPED] libselinux-3.4-6.fc38.s390x.rpm: Already downloaded [SKIPPED] libsemanage-3.4-6.fc38.s390x.rpm: Already downloaded [SKIPPED] libsepol-3.4-4.fc38.s390x.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc37.s390x.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.s390x.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc37.s390x.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc37.s390x.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc37.s390x.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.s390x.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-5.fc38.s390x.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-2.fc38.s390x.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.s390x.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-6.fc38.s390x.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc37.s390x.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-2.fc38.s390x.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-5.20221126.fc38.s390x.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc37.s390x.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.s390x.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-6.fc38.s390x.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-5.fc38.s390x.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-5.fc38.s390x.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-15.fc38.s390x.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-15.fc38.s390x.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc37.s390x.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc37.1.s390x.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.s390x.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.s390x.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.s390x.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.s390x.rpm: Already downloaded [SKIPPED] redhat-rpm-config-235-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-8.fc38.s390x.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-8.fc38.s390x.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-8.fc38.s390x.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-8.fc38.s390x.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.2.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.s390x.rpm: Already downloaded [SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-3.fc38.s390x.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] systemd-libs-252.4-598.fc38.s390x.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.s390x.rpm: Already downloaded [SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.s390x.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-3.fc38.s390x.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.s390x.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.s390x.rpm: Already downloaded [SKIPPED] xz-5.2.9-1.fc38.s390x.rpm: Already downloaded [SKIPPED] xz-libs-5.2.9-1.fc38.s390x.rpm: Already downloaded [SKIPPED] zip-3.0-35.fc38.s390x.rpm: Already downloaded [SKIPPED] zlib-1.2.13-1.fc38.s390x.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.s390x.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.s390x 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.s390x 1/153 Running scriptlet: libgcc-13.0.0-0.4.fc38.s390x 1/153 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/153 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/153 Installing : fedora-release-identity-basic-38-0.6.noarch 3/153 Installing : tzdata-2022g-1.fc38.noarch 4/153 Installing : rust-srpm-macros-23-1.fc38.noarch 5/153 Installing : qt5-srpm-macros-5.15.7-1.fc38.noarch 6/153 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 7/153 Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/153 Installing : perl-srpm-macros-1-47.fc38.noarch 9/153 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 10/153 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 11/153 Installing : openblas-srpm-macros-2-12.fc37.noarch 12/153 Installing : ocaml-srpm-macros-7-2.fc37.noarch 13/153 Installing : nim-srpm-macros-3-7.fc37.noarch 14/153 Installing : ncurses-base-6.3-5.20221126.fc38.noarch 15/153 Installing : libssh-config-0.10.4-2.fc38.noarch 16/153 Installing : kernel-srpm-macros-1.0-15.fc37.noarch 17/153 Installing : gnat-srpm-macros-4-16.fc37.noarch 18/153 Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 19/153 Installing : fpc-srpm-macros-1.3-6.fc37.noarch 20/153 Installing : fedora-gpg-keys-38-0.3.noarch 21/153 Installing : fedora-release-38-0.6.noarch 22/153 Installing : fedora-release-common-38-0.6.noarch 23/153 Installing : fedora-repos-rawhide-38-0.3.noarch 24/153 Installing : fedora-repos-38-0.3.noarch 25/153 Installing : setup-2.14.3-1.fc38.noarch 26/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-1.fc38.noarch 26/153 Installing : filesystem-3.18-2.fc37.s390x 27/153 Installing : basesystem-11-14.fc37.noarch 28/153 Installing : glibc-gconv-extra-2.36.9000-18.fc38.s390x 29/153 Running scriptlet: glibc-gconv-extra-2.36.9000-18.fc38.s390x 29/153 Installing : ncurses-libs-6.3-5.20221126.fc38.s390x 30/153 Running scriptlet: glibc-2.36.9000-18.fc38.s390x 31/153 Installing : glibc-2.36.9000-18.fc38.s390x 31/153 Running scriptlet: glibc-2.36.9000-18.fc38.s390x 31/153 Installing : bash-5.2.9-3.fc38.s390x 32/153 Running scriptlet: bash-5.2.9-3.fc38.s390x 32/153 Installing : glibc-common-2.36.9000-18.fc38.s390x 33/153 Installing : glibc-minimal-langpack-2.36.9000-18.fc38.s390x 34/153 Installing : zlib-1.2.13-1.fc38.s390x 35/153 Installing : xz-libs-5.2.9-1.fc38.s390x 36/153 Installing : bzip2-libs-1.0.8-12.fc37.s390x 37/153 Installing : elfutils-libelf-0.188-3.fc38.s390x 38/153 Installing : gmp-1:6.2.1-3.fc37.s390x 39/153 Installing : libstdc++-13.0.0-0.4.fc38.s390x 40/153 Installing : libuuid-2.38.1-3.fc38.s390x 41/153 Installing : libzstd-1.5.2-3.fc37.s390x 42/153 Installing : popt-1.19-1.fc38.s390x 43/153 Installing : libblkid-2.38.1-3.fc38.s390x 44/153 Installing : libattr-2.5.1-5.fc38.s390x 45/153 Installing : libacl-2.3.1-4.fc38.s390x 46/153 Installing : libcap-2.48-5.fc37.s390x 47/153 Installing : libxcrypt-4.4.33-5.fc38.s390x 48/153 Installing : readline-8.2-2.fc38.s390x 49/153 Installing : lz4-libs-1.9.3-5.fc37.s390x 50/153 Installing : systemd-libs-252.4-598.fc38.s390x 51/153 Installing : mpfr-4.1.1-2.fc38.s390x 52/153 Installing : dwz-0.15-1.fc38.s390x 53/153 Installing : unzip-6.0-58.fc38.s390x 54/153 Installing : file-libs-5.42-4.fc37.s390x 55/153 Installing : file-5.42-4.fc37.s390x 56/153 Installing : sqlite-libs-3.40.0-1.fc38.s390x 57/153 Installing : alternatives-1.21-1.fc38.s390x 58/153 Installing : libcap-ng-0.8.3-4.fc38.s390x 59/153 Installing : audit-libs-3.0.9-1.fc38.s390x 60/153 Installing : libcom_err-1.46.5-3.fc37.s390x 61/153 Installing : libeconf-0.4.0-4.fc37.s390x 62/153 Installing : pam-libs-1.5.2-15.fc38.s390x 63/153 Installing : libsepol-3.4-4.fc38.s390x 64/153 Installing : libsmartcols-2.38.1-3.fc38.s390x 65/153 Installing : libunistring-1.0-2.fc37.s390x 66/153 Installing : libidn2-2.3.4-1.fc38.s390x 67/153 Installing : lua-libs-5.4.4-6.fc38.s390x 68/153 Installing : pcre2-10.40-1.fc37.1.s390x 69/153 Installing : libselinux-3.4-6.fc38.s390x 70/153 Installing : sed-4.8-11.fc37.s390x 71/153 Installing : grep-3.8-1.fc38.s390x 72/153 Installing : findutils-1:4.9.0-2.fc37.s390x 73/153 Installing : xz-5.2.9-1.fc38.s390x 74/153 Installing : libmount-2.38.1-3.fc38.s390x 75/153 Installing : util-linux-core-2.38.1-3.fc38.s390x 76/153 Installing : libsemanage-3.4-6.fc38.s390x 77/153 Installing : shadow-utils-2:4.13-3.fc38.s390x 78/153 Running scriptlet: libutempter-1.2.1-7.fc37.s390x 79/153 Installing : libutempter-1.2.1-7.fc37.s390x 79/153 Installing : tar-2:1.34-5.fc38.s390x 80/153 Installing : libpsl-0.21.1-6.fc37.s390x 81/153 Installing : zip-3.0-35.fc38.s390x 82/153 Installing : zstd-1.5.2-3.fc37.s390x 83/153 Installing : libfdisk-2.38.1-3.fc38.s390x 84/153 Installing : nettle-3.8-2.fc37.s390x 85/153 Installing : rpm-sequoia-1.2.0-1.fc38.s390x 86/153 Installing : rpm-libs-4.18.0-8.fc38.s390x 87/153 Installing : bzip2-1.0.8-12.fc37.s390x 88/153 Installing : libxml2-2.10.3-2.fc38.s390x 89/153 Installing : ed-1.18-2.fc37.s390x 90/153 Installing : patch-2.7.6-17.fc37.s390x 91/153 Installing : elfutils-default-yama-scope-0.188-3.fc38.noarch 92/153 Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch 92/153 Installing : libgomp-13.0.0-0.4.fc38.s390x 93/153 Installing : cpio-2.13-13.fc38.s390x 94/153 Installing : diffutils-3.8-3.fc37.s390x 95/153 Installing : gdbm-libs-1:1.23-2.fc37.s390x 96/153 Installing : cyrus-sasl-lib-2.1.28-8.fc38.s390x 97/153 Installing : jansson-2.13.1-5.fc37.s390x 98/153 Installing : keyutils-libs-1.6.1-5.fc37.s390x 99/153 Installing : libbrotli-1.0.9-9.fc37.s390x 100/153 Installing : libdb-5.3.28-54.fc38.s390x 101/153 Installing : libffi-3.4.4-1.fc38.s390x 102/153 Installing : p11-kit-0.24.1-5.fc38.s390x 103/153 Installing : libnghttp2-1.51.0-1.fc38.s390x 104/153 Installing : libpkgconf-1.8.0-3.fc37.s390x 105/153 Installing : pkgconf-1.8.0-3.fc37.s390x 106/153 Installing : pkgconf-pkg-config-1.8.0-3.fc37.s390x 107/153 Installing : libsigsegv-2.14-3.fc37.s390x 108/153 Installing : gawk-5.1.1-4.fc37.s390x 109/153 Installing : libtasn1-4.19.0-1.fc38.s390x 110/153 Installing : p11-kit-trust-0.24.1-5.fc38.s390x 111/153 Running scriptlet: p11-kit-trust-0.24.1-5.fc38.s390x 111/153 Installing : libverto-0.3.2-4.fc37.s390x 112/153 Installing : xxhash-libs-0.8.1-3.fc37.s390x 113/153 Installing : coreutils-common-9.1-8.fc38.s390x 114/153 Installing : openssl-libs-1:3.0.5-6.fc38.s390x 115/153 Installing : coreutils-9.1-8.fc38.s390x 116/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 117/153 Installing : ca-certificates-2022.2.54-5.fc37.noarch 117/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 117/153 Installing : krb5-libs-1.20.1-3.fc38.s390x 118/153 Installing : libtirpc-1.3.3-0.fc37.s390x 119/153 Running scriptlet: authselect-libs-1.4.2-1.fc38.s390x 120/153 Installing : authselect-libs-1.4.2-1.fc38.s390x 120/153 Installing : gzip-1.12-2.fc37.s390x 121/153 Installing : cracklib-2.9.7-30.fc38.s390x 122/153 Installing : libpwquality-1.4.4-11.fc37.s390x 123/153 Installing : authselect-1.4.2-1.fc38.s390x 124/153 Installing : libnsl2-2.0.0-4.fc37.s390x 125/153 Installing : pam-1.5.2-15.fc38.s390x 126/153 Installing : libssh-0.10.4-2.fc38.s390x 127/153 Installing : libarchive-3.6.1-3.fc38.s390x 128/153 Installing : libevent-2.1.12-7.fc37.s390x 129/153 Installing : openldap-2.6.3-1.fc38.s390x 130/153 Installing : libcurl-7.87.0-1.fc38.s390x 131/153 Installing : elfutils-libs-0.188-3.fc38.s390x 132/153 Installing : elfutils-debuginfod-client-0.188-3.fc38.s390x 133/153 Installing : binutils-gold-2.39-6.fc38.s390x 134/153 Installing : binutils-2.39-6.fc38.s390x 135/153 Running scriptlet: binutils-2.39-6.fc38.s390x 135/153 Installing : elfutils-0.188-3.fc38.s390x 136/153 Installing : gdb-minimal-12.1-10.fc38.s390x 137/153 Installing : debugedit-5.0-5.fc37.s390x 138/153 Installing : rpm-build-libs-4.18.0-8.fc38.s390x 139/153 Installing : curl-7.87.0-1.fc38.s390x 140/153 Running scriptlet: rpm-4.18.0-8.fc38.s390x 141/153 Installing : rpm-4.18.0-8.fc38.s390x 141/153 Installing : efi-srpm-macros-5-6.fc37.noarch 142/153 Installing : lua-srpm-macros-1-7.fc37.noarch 143/153 Installing : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 144/153 Installing : ansible-srpm-macros-1-8.1.fc38.noarch 145/153 Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 146/153 Installing : go-srpm-macros-3.2.0-1.fc38.noarch 147/153 Installing : python-srpm-macros-3.11-6.fc38.noarch 148/153 Installing : redhat-rpm-config-235-1.fc38.noarch 149/153 Installing : rpm-build-4.18.0-8.fc38.s390x 150/153 Installing : util-linux-2.38.1-3.fc38.s390x 151/153 Installing : which-2.21-36.fc38.s390x 152/153 Installing : info-7.0.1-1.fc38.s390x 153/153 Running scriptlet: filesystem-3.18-2.fc37.s390x 153/153 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-1.fc38.s390x 153/153 Running scriptlet: rpm-4.18.0-8.fc38.s390x 153/153 Running scriptlet: info-7.0.1-1.fc38.s390x 153/153 Verifying : audit-libs-3.0.9-1.fc38.s390x 1/153 Verifying : authselect-1.4.2-1.fc38.s390x 2/153 Verifying : authselect-libs-1.4.2-1.fc38.s390x 3/153 Verifying : bash-5.2.9-3.fc38.s390x 4/153 Verifying : libacl-2.3.1-4.fc38.s390x 5/153 Verifying : libattr-2.5.1-5.fc38.s390x 6/153 Verifying : libgcc-13.0.0-0.4.fc38.s390x 7/153 Verifying : libgomp-13.0.0-0.4.fc38.s390x 8/153 Verifying : libstdc++-13.0.0-0.4.fc38.s390x 9/153 Verifying : alternatives-1.21-1.fc38.s390x 10/153 Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 11/153 Verifying : basesystem-11-14.fc37.noarch 12/153 Verifying : binutils-2.39-6.fc38.s390x 13/153 Verifying : binutils-gold-2.39-6.fc38.s390x 14/153 Verifying : bzip2-1.0.8-12.fc37.s390x 15/153 Verifying : bzip2-libs-1.0.8-12.fc37.s390x 16/153 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 17/153 Verifying : coreutils-9.1-8.fc38.s390x 18/153 Verifying : coreutils-common-9.1-8.fc38.s390x 19/153 Verifying : cpio-2.13-13.fc38.s390x 20/153 Verifying : cracklib-2.9.7-30.fc38.s390x 21/153 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 22/153 Verifying : curl-7.87.0-1.fc38.s390x 23/153 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.s390x 24/153 Verifying : debugedit-5.0-5.fc37.s390x 25/153 Verifying : diffutils-3.8-3.fc37.s390x 26/153 Verifying : dwz-0.15-1.fc38.s390x 27/153 Verifying : ed-1.18-2.fc37.s390x 28/153 Verifying : efi-srpm-macros-5-6.fc37.noarch 29/153 Verifying : elfutils-0.188-3.fc38.s390x 30/153 Verifying : elfutils-debuginfod-client-0.188-3.fc38.s390x 31/153 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 32/153 Verifying : elfutils-libelf-0.188-3.fc38.s390x 33/153 Verifying : elfutils-libs-0.188-3.fc38.s390x 34/153 Verifying : fedora-gpg-keys-38-0.3.noarch 35/153 Verifying : fedora-release-38-0.6.noarch 36/153 Verifying : fedora-release-common-38-0.6.noarch 37/153 Verifying : fedora-release-identity-basic-38-0.6.noarch 38/153 Verifying : fedora-repos-38-0.3.noarch 39/153 Verifying : fedora-repos-rawhide-38-0.3.noarch 40/153 Verifying : file-5.42-4.fc37.s390x 41/153 Verifying : file-libs-5.42-4.fc37.s390x 42/153 Verifying : filesystem-3.18-2.fc37.s390x 43/153 Verifying : findutils-1:4.9.0-2.fc37.s390x 44/153 Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 45/153 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 46/153 Verifying : gawk-5.1.1-4.fc37.s390x 47/153 Verifying : gdb-minimal-12.1-10.fc38.s390x 48/153 Verifying : gdbm-libs-1:1.23-2.fc37.s390x 49/153 Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 50/153 Verifying : glibc-2.36.9000-18.fc38.s390x 51/153 Verifying : glibc-common-2.36.9000-18.fc38.s390x 52/153 Verifying : glibc-gconv-extra-2.36.9000-18.fc38.s390x 53/153 Verifying : glibc-minimal-langpack-2.36.9000-18.fc38.s390x 54/153 Verifying : gmp-1:6.2.1-3.fc37.s390x 55/153 Verifying : gnat-srpm-macros-4-16.fc37.noarch 56/153 Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 57/153 Verifying : grep-3.8-1.fc38.s390x 58/153 Verifying : gzip-1.12-2.fc37.s390x 59/153 Verifying : info-7.0.1-1.fc38.s390x 60/153 Verifying : jansson-2.13.1-5.fc37.s390x 61/153 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 62/153 Verifying : keyutils-libs-1.6.1-5.fc37.s390x 63/153 Verifying : krb5-libs-1.20.1-3.fc38.s390x 64/153 Verifying : libarchive-3.6.1-3.fc38.s390x 65/153 Verifying : libblkid-2.38.1-3.fc38.s390x 66/153 Verifying : libbrotli-1.0.9-9.fc37.s390x 67/153 Verifying : libcap-2.48-5.fc37.s390x 68/153 Verifying : libcap-ng-0.8.3-4.fc38.s390x 69/153 Verifying : libcom_err-1.46.5-3.fc37.s390x 70/153 Verifying : libcurl-7.87.0-1.fc38.s390x 71/153 Verifying : libdb-5.3.28-54.fc38.s390x 72/153 Verifying : libeconf-0.4.0-4.fc37.s390x 73/153 Verifying : libevent-2.1.12-7.fc37.s390x 74/153 Verifying : libfdisk-2.38.1-3.fc38.s390x 75/153 Verifying : libffi-3.4.4-1.fc38.s390x 76/153 Verifying : libidn2-2.3.4-1.fc38.s390x 77/153 Verifying : libmount-2.38.1-3.fc38.s390x 78/153 Verifying : libnghttp2-1.51.0-1.fc38.s390x 79/153 Verifying : libnsl2-2.0.0-4.fc37.s390x 80/153 Verifying : libpkgconf-1.8.0-3.fc37.s390x 81/153 Verifying : libpsl-0.21.1-6.fc37.s390x 82/153 Verifying : libpwquality-1.4.4-11.fc37.s390x 83/153 Verifying : libselinux-3.4-6.fc38.s390x 84/153 Verifying : libsemanage-3.4-6.fc38.s390x 85/153 Verifying : libsepol-3.4-4.fc38.s390x 86/153 Verifying : libsigsegv-2.14-3.fc37.s390x 87/153 Verifying : libsmartcols-2.38.1-3.fc38.s390x 88/153 Verifying : libssh-0.10.4-2.fc38.s390x 89/153 Verifying : libssh-config-0.10.4-2.fc38.noarch 90/153 Verifying : libtasn1-4.19.0-1.fc38.s390x 91/153 Verifying : libtirpc-1.3.3-0.fc37.s390x 92/153 Verifying : libunistring-1.0-2.fc37.s390x 93/153 Verifying : libutempter-1.2.1-7.fc37.s390x 94/153 Verifying : libuuid-2.38.1-3.fc38.s390x 95/153 Verifying : libverto-0.3.2-4.fc37.s390x 96/153 Verifying : libxcrypt-4.4.33-5.fc38.s390x 97/153 Verifying : libxml2-2.10.3-2.fc38.s390x 98/153 Verifying : libzstd-1.5.2-3.fc37.s390x 99/153 Verifying : lua-libs-5.4.4-6.fc38.s390x 100/153 Verifying : lua-srpm-macros-1-7.fc37.noarch 101/153 Verifying : lz4-libs-1.9.3-5.fc37.s390x 102/153 Verifying : mpfr-4.1.1-2.fc38.s390x 103/153 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 104/153 Verifying : ncurses-libs-6.3-5.20221126.fc38.s390x 105/153 Verifying : nettle-3.8-2.fc37.s390x 106/153 Verifying : nim-srpm-macros-3-7.fc37.noarch 107/153 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 108/153 Verifying : openblas-srpm-macros-2-12.fc37.noarch 109/153 Verifying : openldap-2.6.3-1.fc38.s390x 110/153 Verifying : openssl-libs-1:3.0.5-6.fc38.s390x 111/153 Verifying : p11-kit-0.24.1-5.fc38.s390x 112/153 Verifying : p11-kit-trust-0.24.1-5.fc38.s390x 113/153 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 114/153 Verifying : pam-1.5.2-15.fc38.s390x 115/153 Verifying : pam-libs-1.5.2-15.fc38.s390x 116/153 Verifying : patch-2.7.6-17.fc37.s390x 117/153 Verifying : pcre2-10.40-1.fc37.1.s390x 118/153 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/153 Verifying : perl-srpm-macros-1-47.fc38.noarch 120/153 Verifying : pkgconf-1.8.0-3.fc37.s390x 121/153 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/153 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.s390x 123/153 Verifying : popt-1.19-1.fc38.s390x 124/153 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 125/153 Verifying : python-srpm-macros-3.11-6.fc38.noarch 126/153 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 127/153 Verifying : readline-8.2-2.fc38.s390x 128/153 Verifying : redhat-rpm-config-235-1.fc38.noarch 129/153 Verifying : rpm-4.18.0-8.fc38.s390x 130/153 Verifying : rpm-build-4.18.0-8.fc38.s390x 131/153 Verifying : rpm-build-libs-4.18.0-8.fc38.s390x 132/153 Verifying : rpm-libs-4.18.0-8.fc38.s390x 133/153 Verifying : rpm-sequoia-1.2.0-1.fc38.s390x 134/153 Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 135/153 Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153 Verifying : sed-4.8-11.fc37.s390x 137/153 Verifying : setup-2.14.3-1.fc38.noarch 138/153 Verifying : shadow-utils-2:4.13-3.fc38.s390x 139/153 Verifying : sqlite-libs-3.40.0-1.fc38.s390x 140/153 Verifying : systemd-libs-252.4-598.fc38.s390x 141/153 Verifying : tar-2:1.34-5.fc38.s390x 142/153 Verifying : tzdata-2022g-1.fc38.noarch 143/153 Verifying : unzip-6.0-58.fc38.s390x 144/153 Verifying : util-linux-2.38.1-3.fc38.s390x 145/153 Verifying : util-linux-core-2.38.1-3.fc38.s390x 146/153 Verifying : which-2.21-36.fc38.s390x 147/153 Verifying : xxhash-libs-0.8.1-3.fc37.s390x 148/153 Verifying : xz-5.2.9-1.fc38.s390x 149/153 Verifying : xz-libs-5.2.9-1.fc38.s390x 150/153 Verifying : zip-3.0-35.fc38.s390x 151/153 Verifying : zlib-1.2.13-1.fc38.s390x 152/153 Verifying : zstd-1.5.2-3.fc37.s390x 153/153 Installed: alternatives-1.21-1.fc38.s390x ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-1.fc38.s390x authselect-1.4.2-1.fc38.s390x authselect-libs-1.4.2-1.fc38.s390x basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.s390x binutils-2.39-6.fc38.s390x binutils-gold-2.39-6.fc38.s390x bzip2-1.0.8-12.fc37.s390x bzip2-libs-1.0.8-12.fc37.s390x ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.s390x coreutils-common-9.1-8.fc38.s390x cpio-2.13-13.fc38.s390x cracklib-2.9.7-30.fc38.s390x crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.s390x cyrus-sasl-lib-2.1.28-8.fc38.s390x debugedit-5.0-5.fc37.s390x diffutils-3.8-3.fc37.s390x dwz-0.15-1.fc38.s390x ed-1.18-2.fc37.s390x efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.s390x elfutils-debuginfod-client-0.188-3.fc38.s390x elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.s390x elfutils-libs-0.188-3.fc38.s390x fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc37.s390x file-libs-5.42-4.fc37.s390x filesystem-3.18-2.fc37.s390x findutils-1:4.9.0-2.fc37.s390x fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.s390x gdb-minimal-12.1-10.fc38.s390x gdbm-libs-1:1.23-2.fc37.s390x ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-18.fc38.s390x glibc-common-2.36.9000-18.fc38.s390x glibc-gconv-extra-2.36.9000-18.fc38.s390x glibc-minimal-langpack-2.36.9000-18.fc38.s390x gmp-1:6.2.1-3.fc37.s390x gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.s390x gzip-1.12-2.fc37.s390x info-7.0.1-1.fc38.s390x jansson-2.13.1-5.fc37.s390x kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.s390x krb5-libs-1.20.1-3.fc38.s390x libacl-2.3.1-4.fc38.s390x libarchive-3.6.1-3.fc38.s390x libattr-2.5.1-5.fc38.s390x libblkid-2.38.1-3.fc38.s390x libbrotli-1.0.9-9.fc37.s390x libcap-2.48-5.fc37.s390x libcap-ng-0.8.3-4.fc38.s390x libcom_err-1.46.5-3.fc37.s390x libcurl-7.87.0-1.fc38.s390x libdb-5.3.28-54.fc38.s390x libeconf-0.4.0-4.fc37.s390x libevent-2.1.12-7.fc37.s390x libfdisk-2.38.1-3.fc38.s390x libffi-3.4.4-1.fc38.s390x libgcc-13.0.0-0.4.fc38.s390x libgomp-13.0.0-0.4.fc38.s390x libidn2-2.3.4-1.fc38.s390x libmount-2.38.1-3.fc38.s390x libnghttp2-1.51.0-1.fc38.s390x libnsl2-2.0.0-4.fc37.s390x libpkgconf-1.8.0-3.fc37.s390x libpsl-0.21.1-6.fc37.s390x libpwquality-1.4.4-11.fc37.s390x libselinux-3.4-6.fc38.s390x libsemanage-3.4-6.fc38.s390x libsepol-3.4-4.fc38.s390x libsigsegv-2.14-3.fc37.s390x libsmartcols-2.38.1-3.fc38.s390x libssh-0.10.4-2.fc38.s390x libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.s390x libtasn1-4.19.0-1.fc38.s390x libtirpc-1.3.3-0.fc37.s390x libunistring-1.0-2.fc37.s390x libutempter-1.2.1-7.fc37.s390x libuuid-2.38.1-3.fc38.s390x libverto-0.3.2-4.fc37.s390x libxcrypt-4.4.33-5.fc38.s390x libxml2-2.10.3-2.fc38.s390x libzstd-1.5.2-3.fc37.s390x lua-libs-5.4.4-6.fc38.s390x lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc37.s390x mpfr-4.1.1-2.fc38.s390x ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.s390x nettle-3.8-2.fc37.s390x nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.s390x openssl-libs-1:3.0.5-6.fc38.s390x p11-kit-0.24.1-5.fc38.s390x p11-kit-trust-0.24.1-5.fc38.s390x package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.s390x pam-libs-1.5.2-15.fc38.s390x patch-2.7.6-17.fc37.s390x pcre2-10.40-1.fc37.1.s390x pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc37.s390x pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.s390x popt-1.19-1.fc38.s390x publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-6.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.s390x redhat-rpm-config-235-1.fc38.noarch rpm-4.18.0-8.fc38.s390x rpm-build-4.18.0-8.fc38.s390x rpm-build-libs-4.18.0-8.fc38.s390x rpm-libs-4.18.0-8.fc38.s390x rpm-sequoia-1.2.0-1.fc38.s390x rpmautospec-rpm-macros-0.3.1-1.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc37.s390x setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.s390x sqlite-libs-3.40.0-1.fc38.s390x systemd-libs-252.4-598.fc38.s390x tar-2:1.34-5.fc38.s390x tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.s390x util-linux-2.38.1-3.fc38.s390x util-linux-core-2.38.1-3.fc38.s390x which-2.21-36.fc38.s390x xxhash-libs-0.8.1-3.fc37.s390x xz-5.2.9-1.fc38.s390x xz-libs-5.2.9-1.fc38.s390x zip-3.0-35.fc38.s390x zlib-1.2.13-1.fc38.s390x zstd-1.5.2-3.fc37.s390x Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: crypto-policies-20221215-1.gita4c31a3.fc38.noarch libsemanage-3.4-6.fc38.s390x rpmautospec-rpm-macros-0.3.1-1.fc38.noarch diffutils-3.8-3.fc37.s390x systemd-libs-252.4-598.fc38.s390x rust-srpm-macros-23-1.fc38.noarch file-5.42-4.fc37.s390x tzdata-2022g-1.fc38.noarch gawk-5.1.1-4.fc37.s390x pkgconf-1.8.0-3.fc37.s390x libarchive-3.6.1-3.fc38.s390x setup-2.14.3-1.fc38.noarch elfutils-libelf-0.188-3.fc38.s390x fedora-release-common-38-0.6.noarch gnat-srpm-macros-4-16.fc37.noarch sqlite-libs-3.40.0-1.fc38.s390x gzip-1.12-2.fc37.s390x elfutils-default-yama-scope-0.188-3.fc38.noarch xxhash-libs-0.8.1-3.fc37.s390x libutempter-1.2.1-7.fc37.s390x glibc-common-2.36.9000-18.fc38.s390x lz4-libs-1.9.3-5.fc37.s390x ocaml-srpm-macros-7-2.fc37.noarch coreutils-9.1-8.fc38.s390x grep-3.8-1.fc38.s390x cracklib-2.9.7-30.fc38.s390x binutils-2.39-6.fc38.s390x util-linux-2.38.1-3.fc38.s390x cyrus-sasl-lib-2.1.28-8.fc38.s390x tar-1.34-5.fc38.s390x popt-1.19-1.fc38.s390x p11-kit-0.24.1-5.fc38.s390x kernel-srpm-macros-1.0-15.fc37.noarch glibc-2.36.9000-18.fc38.s390x xz-libs-5.2.9-1.fc38.s390x go-srpm-macros-3.2.0-1.fc38.noarch binutils-gold-2.39-6.fc38.s390x xz-5.2.9-1.fc38.s390x libxml2-2.10.3-2.fc38.s390x shadow-utils-4.13-3.fc38.s390x glibc-minimal-langpack-2.36.9000-18.fc38.s390x gdb-minimal-12.1-10.fc38.s390x ed-1.18-2.fc37.s390x pam-libs-1.5.2-15.fc38.s390x lua-libs-5.4.4-6.fc38.s390x elfutils-0.188-3.fc38.s390x libssh-config-0.10.4-2.fc38.noarch filesystem-3.18-2.fc37.s390x gmp-6.2.1-3.fc37.s390x openldap-2.6.3-1.fc38.s390x pkgconf-m4-1.8.0-3.fc37.noarch libidn2-2.3.4-1.fc38.s390x elfutils-libs-0.188-3.fc38.s390x libtirpc-1.3.3-0.fc37.s390x elfutils-debuginfod-client-0.188-3.fc38.s390x alternatives-1.21-1.fc38.s390x libuuid-2.38.1-3.fc38.s390x libcurl-7.87.0-1.fc38.s390x zlib-1.2.13-1.fc38.s390x findutils-4.9.0-2.fc37.s390x libpkgconf-1.8.0-3.fc37.s390x ansible-srpm-macros-1-8.1.fc38.noarch libcap-ng-0.8.3-4.fc38.s390x which-2.21-36.fc38.s390x unzip-6.0-58.fc38.s390x libverto-0.3.2-4.fc37.s390x libzstd-1.5.2-3.fc37.s390x libffi-3.4.4-1.fc38.s390x nettle-3.8-2.fc37.s390x util-linux-core-2.38.1-3.fc38.s390x ncurses-libs-6.3-5.20221126.fc38.s390x info-7.0.1-1.fc38.s390x pcre2-syntax-10.40-1.fc37.1.noarch libselinux-3.4-6.fc38.s390x keyutils-libs-1.6.1-5.fc37.s390x libpwquality-1.4.4-11.fc37.s390x lua-srpm-macros-1-7.fc37.noarch package-notes-srpm-macros-0.5-6.fc38.noarch nim-srpm-macros-3-7.fc37.noarch libxcrypt-4.4.33-5.fc38.s390x libstdc++-13.0.0-0.4.fc38.s390x libsepol-3.4-4.fc38.s390x libgcc-13.0.0-0.4.fc38.s390x libevent-2.1.12-7.fc37.s390x gpg-pubkey-5323552a-6112bcdc jansson-2.13.1-5.fc37.s390x fpc-srpm-macros-1.3-6.fc37.noarch pcre2-10.40-1.fc37.1.s390x mpfr-4.1.1-2.fc38.s390x basesystem-11-14.fc37.noarch libnsl2-2.0.0-4.fc37.s390x sed-4.8-11.fc37.s390x gpg-pubkey-eb10b464-6202d9c6 qt5-srpm-macros-5.15.7-1.fc38.noarch libcap-2.48-5.fc37.s390x fedora-repos-38-0.3.noarch perl-srpm-macros-1-47.fc38.noarch debugedit-5.0-5.fc37.s390x dwz-0.15-1.fc38.s390x fedora-release-identity-basic-38-0.6.noarch libcom_err-1.46.5-3.fc37.s390x bash-5.2.9-3.fc38.s390x libgomp-13.0.0-0.4.fc38.s390x python-srpm-macros-3.11-6.fc38.noarch efi-srpm-macros-5-6.fc37.noarch libtasn1-4.19.0-1.fc38.s390x p11-kit-trust-0.24.1-5.fc38.s390x rpm-4.18.0-8.fc38.s390x libpsl-0.21.1-6.fc37.s390x gdbm-libs-1.23-2.fc37.s390x libfdisk-2.38.1-3.fc38.s390x libdb-5.3.28-54.fc38.s390x rpm-libs-4.18.0-8.fc38.s390x openblas-srpm-macros-2-12.fc37.noarch libmount-2.38.1-3.fc38.s390x ca-certificates-2022.2.54-5.fc37.noarch krb5-libs-1.20.1-3.fc38.s390x openssl-libs-3.0.5-6.fc38.s390x authselect-libs-1.4.2-1.fc38.s390x libblkid-2.38.1-3.fc38.s390x libeconf-0.4.0-4.fc37.s390x redhat-rpm-config-235-1.fc38.noarch ghc-srpm-macros-1.5.0-7.fc37.noarch authselect-1.4.2-1.fc38.s390x cpio-2.13-13.fc38.s390x fedora-release-38-0.6.noarch libssh-0.10.4-2.fc38.s390x readline-8.2-2.fc38.s390x libunistring-1.0-2.fc37.s390x patch-2.7.6-17.fc37.s390x fedora-gpg-keys-38-0.3.noarch file-libs-5.42-4.fc37.s390x fonts-srpm-macros-2.0.5-10.fc38.noarch bzip2-libs-1.0.8-12.fc37.s390x fedora-repos-rawhide-38-0.3.noarch pam-1.5.2-15.fc38.s390x rpm-build-libs-4.18.0-8.fc38.s390x coreutils-common-9.1-8.fc38.s390x curl-7.87.0-1.fc38.s390x zstd-1.5.2-3.fc37.s390x rpm-sequoia-1.2.0-1.fc38.s390x ncurses-base-6.3-5.20221126.fc38.noarch zip-3.0-35.fc38.s390x publicsuffix-list-dafsa-20221208-1.fc38.noarch pkgconf-pkg-config-1.8.0-3.fc37.s390x glibc-gconv-extra-2.36.9000-18.fc38.s390x libsmartcols-2.38.1-3.fc38.s390x libattr-2.5.1-5.fc38.s390x libacl-2.3.1-4.fc38.s390x libbrotli-1.0.9-9.fc37.s390x libsigsegv-2.14-3.fc37.s390x bzip2-1.0.8-12.fc37.s390x audit-libs-3.0.9-1.fc38.s390x rpm-build-4.18.0-8.fc38.s390x libnghttp2-1.51.0-1.fc38.s390x Start: buildsrpm Start: rpmbuild -bs sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1670716800 Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-3.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-82f9a8o_/bionetgen/bionetgen.spec) Config(child) 1 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1671793015.894390 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1671793015.894390/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1671793015.894390/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.7 kB/s | 3.0 kB 00:00 Additional repo https_jakub_fedorapeople_org_fe 4.1 kB/s | 3.0 kB 00:00 fedora 1.1 kB/s | 6.6 kB 00:06 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bionetgen-2.8.4-3.fc38.src.rpm Start: build setup for bionetgen-2.8.4-3.fc38.src.rpm sh: line 1: /usr/bin/perl: No such file or directory Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1670716800 Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-3.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.6 kB/s | 3.0 kB 00:00 Additional repo https_jakub_fedorapeople_org_fe 4.3 kB/s | 3.0 kB 00:00 fedora 9.6 kB/s | 6.6 kB 00:00 Dependencies resolved. ============================================================================================================= Package Arch Version Repository Size ============================================================================================================= Installing: cmake s390x 3.25.1-1.fc38 fedora 6.2 M gcc s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 28 M gcc-c++ s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 11 M gcc-gfortran s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 10 M make s390x 1:4.3-11.fc37 fedora 536 k perl-Carp noarch 1.52-489.fc37 fedora 29 k perl-Class-Struct noarch 0.66-492.fc38 fedora 25 k perl-Data-Dumper s390x 2.184-490.fc37 fedora 56 k perl-Exporter noarch 5.77-489.fc37 fedora 31 k perl-File-Basename noarch 2.85-492.fc38 fedora 20 k perl-FindBin noarch 1.53-492.fc38 fedora 17 k perl-Getopt-Long noarch 1:2.54-1.fc38 fedora 60 k perl-IO s390x 1.50-492.fc38 fedora 95 k perl-IPC-Open3 noarch 1.22-492.fc38 fedora 26 k perl-Math-Complex noarch 1.59-492.fc38 fedora 50 k perl-POSIX s390x 2.03-492.fc38 fedora 99 k perl-PathTools s390x 3.84-489.fc37 fedora 89 k perl-Scalar-List-Utils s390x 5:1.63-489.fc38 fedora 71 k perl-Symbol noarch 1.09-492.fc38 fedora 17 k perl-constant noarch 1.33-490.fc37 fedora 23 k perl-generators noarch 1.15-1.fc38 fedora 16 k perl-interpreter s390x 4:5.36.0-492.fc38 fedora 75 k perl-lib s390x 0.65-492.fc38 fedora 18 k perl-libs s390x 4:5.36.0-492.fc38 fedora 2.2 M perl-vars noarch 1.05-492.fc38 fedora 16 k Installing dependencies: annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k annobin-plugin-gcc s390x 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 888 k cmake-data noarch 3.25.1-1.fc38 fedora 2.2 M cmake-filesystem s390x 3.25.1-1.fc38 fedora 16 k cmake-rpm-macros noarch 3.25.1-1.fc38 fedora 16 k cpp s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 8.9 M emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k expat s390x 2.5.0-1.fc38 fedora 108 k gc s390x 8.2.2-1.fc38 fedora 106 k gcc-plugin-annobin s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 28 k glibc-devel s390x 2.36.9000-18.fc38 fedora 55 k glibc-headers-s390 noarch 2.36.9000-18.fc38 fedora 516 k groff-base s390x 1.22.4-10.fc37 fedora 1.0 M guile22 s390x 2.2.7-6.fc37 fedora 6.5 M jsoncpp s390x 1.9.5-3.fc37 fedora 91 k kernel-headers s390x 6.1.0-1.fc38 fedora 1.5 M libasan s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 492 k libatomic s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 18 k libb2 s390x 0.98.1-7.fc37 fedora 26 k libgfortran s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 560 k libmpc s390x 1.2.1-5.fc37 fedora 61 k libstdc++-devel s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M libtool-ltdl s390x 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 38 k libubsan s390x 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 203 k libuv s390x 1:1.44.2-2.fc37 fedora 147 k libxcrypt-devel s390x 4.4.33-5.fc38 fedora 30 k mpdecimal s390x 2.5.1-4.fc37 fedora 104 k ncurses s390x 6.3-5.20221126.fc38 fedora 413 k perl-B s390x 1.83-492.fc38 fedora 184 k perl-DynaLoader s390x 1.52-492.fc38 fedora 29 k perl-Encode s390x 4:3.19-492.fc38 fedora 1.7 M perl-Errno s390x 1.36-492.fc38 fedora 18 k perl-Fcntl s390x 1.15-492.fc38 fedora 23 k perl-Fedora-VSP noarch 0.001-30.fc38 fedora 23 k perl-File-Path noarch 2.18-489.fc37 fedora 35 k perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k perl-File-stat noarch 1.12-492.fc38 fedora 20 k perl-Getopt-Std noarch 1.13-492.fc38 fedora 19 k perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k perl-MIME-Base64 s390x 3.16-489.fc37 fedora 30 k perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k perl-SelectSaver noarch 1.02-492.fc38 fedora 15 k perl-Socket s390x 4:2.036-1.fc38 fedora 55 k perl-Storable s390x 1:3.26-489.fc37 fedora 93 k perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k perl-if noarch 0.61.000-492.fc38 fedora 17 k perl-macros noarch 4:5.36.0-492.fc38 fedora 14 k perl-mro s390x 1.26-492.fc38 fedora 31 k perl-overload noarch 1.35-492.fc38 fedora 49 k perl-overloading noarch 0.02-492.fc38 fedora 16 k perl-parent noarch 1:0.239-1.fc38 fedora 14 k perl-podlators noarch 1:5.00-1.fc38 fedora 127 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 s390x 3.11.1-1.fc38 fedora 27 k python3-libs s390x 3.11.1-1.fc38 fedora 9.5 M rhash s390x 1.4.3-1.fc38 fedora 193 k vim-filesystem noarch 2:9.0.1054-1.fc38 fedora 19 k Transaction Summary ============================================================================================================= Install 90 Packages Total size: 101 M Total download size: 11 M Installed size: 324 M Downloading Packages: [SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.s390x.rpm: Already downloaded [SKIPPED] cpp-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] gcc-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] gcc-c++-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] libasan-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] libatomic-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] libstdc++-devel-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.s390x.rpm: Already downloaded [SKIPPED] libubsan-13.0.0-0.4.fc38.s390x.rpm: Already downloaded [SKIPPED] cmake-3.25.1-1.fc38.s390x.rpm: Already downloaded [SKIPPED] cmake-data-3.25.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.25.1-1.fc38.s390x.rpm: Already downloaded [SKIPPED] cmake-rpm-macros-3.25.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] gc-8.2.2-1.fc38.s390x.rpm: Already downloaded [SKIPPED] glibc-devel-2.36.9000-18.fc38.s390x.rpm: Already downloaded [SKIPPED] glibc-headers-s390-2.36.9000-18.fc38.noarch.rpm: Already downloaded [SKIPPED] groff-base-1.22.4-10.fc37.s390x.rpm: Already downloaded [SKIPPED] guile22-2.2.7-6.fc37.s390x.rpm: Already downloaded [SKIPPED] jsoncpp-1.9.5-3.fc37.s390x.rpm: Already downloaded [SKIPPED] kernel-headers-6.1.0-1.fc38.s390x.rpm: Already downloaded [SKIPPED] libb2-0.98.1-7.fc37.s390x.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-5.fc37.s390x.rpm: Already downloaded [SKIPPED] libuv-1.44.2-2.fc37.s390x.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.33-5.fc38.s390x.rpm: Already downloaded [SKIPPED] make-4.3-11.fc37.s390x.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-4.fc37.s390x.rpm: Already downloaded [SKIPPED] ncurses-6.3-5.20221126.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-B-1.83-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.184-490.fc37.s390x.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.52-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-Errno-1.36-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.54-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.50-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-489.fc37.s390x.rpm: Already downloaded [SKIPPED] perl-POSIX-2.03-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-PathTools-3.84-489.fc37.s390x.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.036-1.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-Storable-3.26-489.fc37.s390x.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.36.0-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-libs-5.36.0-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-mro-1.26-492.fc38.s390x.rpm: Already downloaded [SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.239-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-5.00-1.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-22.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-65.5.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-3.11.1-1.fc38.s390x.rpm: Already downloaded [SKIPPED] python3-libs-3.11.1-1.fc38.s390x.rpm: Already downloaded [SKIPPED] rhash-1.4.3-1.fc38.s390x.rpm: Already downloaded [SKIPPED] vim-filesystem-9.0.1054-1.fc38.noarch.rpm: Already downloaded (83/90): perl-Fedora-VSP-0.001-30.fc38.noarch.r 24 kB/s | 23 kB 00:00 (84/90): perl-FindBin-1.53-492.fc38.noarch.rpm 80 kB/s | 17 kB 00:00 (85/90): perl-Math-Complex-1.59-492.fc38.noarch 137 kB/s | 50 kB 00:00 (86/90): libgfortran-13.0.0-0.4.fc38.s390x.rpm 359 kB/s | 560 kB 00:01 (87/90): perl-generators-1.15-1.fc38.noarch.rpm 91 kB/s | 16 kB 00:00 (88/90): perl-macros-5.36.0-492.fc38.noarch.rpm 82 kB/s | 14 kB 00:00 (89/90): gcc-gfortran-13.0.0-0.4.fc38.s390x.rpm 4.4 MB/s | 10 MB 00:02 (90/90): perl-lib-0.65-492.fc38.s390x.rpm 18 kB/s | 18 kB 00:00 -------------------------------------------------------------------------------- Total 3.2 MB/s | 11 MB 00:03 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.2.1-5.fc37.s390x 1/90 Installing : expat-2.5.0-1.fc38.s390x 2/90 Installing : cmake-filesystem-3.25.1-1.fc38.s390x 3/90 Installing : cpp-13.0.0-0.4.fc38.s390x 4/90 Installing : vim-filesystem-2:9.0.1054-1.fc38.noarch 5/90 Installing : rhash-1.4.3-1.fc38.s390x 6/90 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 7/90 Installing : python-pip-wheel-22.3.1-1.fc38.noarch 8/90 Installing : ncurses-6.3-5.20221126.fc38.s390x 9/90 Installing : mpdecimal-2.5.1-4.fc37.s390x 10/90 Installing : libuv-1:1.44.2-2.fc37.s390x 11/90 Installing : libb2-0.98.1-7.fc37.s390x 12/90 Installing : python3-3.11.1-1.fc38.s390x 13/90 Installing : python3-libs-3.11.1-1.fc38.s390x 14/90 Installing : cmake-rpm-macros-3.25.1-1.fc38.noarch 15/90 Installing : kernel-headers-6.1.0-1.fc38.s390x 16/90 Installing : jsoncpp-1.9.5-3.fc37.s390x 17/90 Running scriptlet: groff-base-1.22.4-10.fc37.s390x 18/90 Installing : groff-base-1.22.4-10.fc37.s390x 18/90 Running scriptlet: groff-base-1.22.4-10.fc37.s390x 18/90 Installing : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 19/90 Installing : perl-if-0.61.000-492.fc38.noarch 20/90 Installing : perl-Time-Local-2:1.300-489.fc37.noarch 21/90 Installing : perl-File-Path-2.18-489.fc37.noarch 22/90 Installing : perl-Pod-Escapes-1:1.07-489.fc37.noarch 23/90 Installing : perl-Class-Struct-0.66-492.fc38.noarch 24/90 Installing : perl-POSIX-2.03-492.fc38.s390x 25/90 Installing : perl-Term-ANSIColor-5.01-490.fc37.noarch 26/90 Installing : perl-IPC-Open3-1.22-492.fc38.noarch 27/90 Installing : perl-HTTP-Tiny-0.082-1.fc37.noarch 28/90 Installing : perl-File-Temp-1:0.231.100-489.fc37.noarch 29/90 Installing : perl-Term-Cap-1.17-489.fc37.noarch 30/90 Installing : perl-Pod-Simple-1:3.43-490.fc37.noarch 31/90 Installing : perl-Socket-4:2.036-1.fc38.s390x 32/90 Installing : perl-SelectSaver-1.02-492.fc38.noarch 33/90 Installing : perl-Symbol-1.09-492.fc38.noarch 34/90 Installing : perl-File-stat-1.12-492.fc38.noarch 35/90 Installing : perl-podlators-1:5.00-1.fc38.noarch 36/90 Installing : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 37/90 Installing : perl-Fcntl-1.15-492.fc38.s390x 38/90 Installing : perl-Text-ParseWords-3.31-489.fc37.noarch 39/90 Installing : perl-mro-1.26-492.fc38.s390x 40/90 Installing : perl-IO-1.50-492.fc38.s390x 41/90 Installing : perl-overloading-0.02-492.fc38.noarch 42/90 Installing : perl-Pod-Usage-4:2.03-3.fc37.noarch 43/90 Installing : perl-Errno-1.36-492.fc38.s390x 44/90 Installing : perl-File-Basename-2.85-492.fc38.noarch 45/90 Installing : perl-Getopt-Std-1.13-492.fc38.noarch 46/90 Installing : perl-MIME-Base64-3.16-489.fc37.s390x 47/90 Installing : perl-Scalar-List-Utils-5:1.63-489.fc38.s390x 48/90 Installing : perl-constant-1.33-490.fc37.noarch 49/90 Installing : perl-Storable-1:3.26-489.fc37.s390x 50/90 Installing : perl-overload-1.35-492.fc38.noarch 51/90 Installing : perl-parent-1:0.239-1.fc38.noarch 52/90 Installing : perl-vars-1.05-492.fc38.noarch 53/90 Installing : perl-Getopt-Long-1:2.54-1.fc38.noarch 54/90 Installing : perl-Carp-1.52-489.fc37.noarch 55/90 Installing : perl-Exporter-5.77-489.fc37.noarch 56/90 Installing : perl-PathTools-3.84-489.fc37.s390x 57/90 Installing : perl-DynaLoader-1.52-492.fc38.s390x 58/90 Installing : perl-Encode-4:3.19-492.fc38.s390x 59/90 Installing : perl-libs-4:5.36.0-492.fc38.s390x 60/90 Installing : perl-interpreter-4:5.36.0-492.fc38.s390x 61/90 Installing : perl-macros-4:5.36.0-492.fc38.noarch 62/90 Installing : perl-Data-Dumper-2.184-490.fc37.s390x 63/90 Installing : perl-B-1.83-492.fc38.s390x 64/90 Installing : perl-Fedora-VSP-0.001-30.fc38.noarch 65/90 Installing : glibc-headers-s390-2.36.9000-18.fc38.noarch 66/90 Installing : libxcrypt-devel-4.4.33-5.fc38.s390x 67/90 Installing : glibc-devel-2.36.9000-18.fc38.s390x 68/90 Installing : gc-8.2.2-1.fc38.s390x 69/90 Installing : emacs-filesystem-1:28.1-3.fc37.noarch 70/90 Installing : 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perl-FindBin-1.53-492.fc38.noarch 88/90 Installing : perl-Math-Complex-1.59-492.fc38.noarch 89/90 Installing : perl-lib-0.65-492.fc38.s390x 90/90 Running scriptlet: perl-lib-0.65-492.fc38.s390x 90/90 Verifying : annobin-docs-10.99-1.0.1.fc38.noarch 1/90 Verifying : annobin-plugin-gcc-10.99-1.0.1.fc38.s390x 2/90 Verifying : cpp-13.0.0-0.4.fc38.s390x 3/90 Verifying : gcc-13.0.0-0.4.fc38.s390x 4/90 Verifying : gcc-c++-13.0.0-0.4.fc38.s390x 5/90 Verifying : gcc-gfortran-13.0.0-0.4.fc38.s390x 6/90 Verifying : gcc-plugin-annobin-13.0.0-0.4.fc38.s390x 7/90 Verifying : libasan-13.0.0-0.4.fc38.s390x 8/90 Verifying : libatomic-13.0.0-0.4.fc38.s390x 9/90 Verifying : libgfortran-13.0.0-0.4.fc38.s390x 10/90 Verifying : libstdc++-devel-13.0.0-0.4.fc38.s390x 11/90 Verifying : libtool-ltdl-2.4.7-3.0.1.fc38.s390x 12/90 Verifying : libubsan-13.0.0-0.4.fc38.s390x 13/90 Verifying : cmake-3.25.1-1.fc38.s390x 14/90 Verifying : cmake-data-3.25.1-1.fc38.noarch 15/90 Verifying : cmake-filesystem-3.25.1-1.fc38.s390x 16/90 Verifying : cmake-rpm-macros-3.25.1-1.fc38.noarch 17/90 Verifying : emacs-filesystem-1:28.1-3.fc37.noarch 18/90 Verifying : expat-2.5.0-1.fc38.s390x 19/90 Verifying : gc-8.2.2-1.fc38.s390x 20/90 Verifying : glibc-devel-2.36.9000-18.fc38.s390x 21/90 Verifying : glibc-headers-s390-2.36.9000-18.fc38.noarch 22/90 Verifying : groff-base-1.22.4-10.fc37.s390x 23/90 Verifying : guile22-2.2.7-6.fc37.s390x 24/90 Verifying : jsoncpp-1.9.5-3.fc37.s390x 25/90 Verifying : kernel-headers-6.1.0-1.fc38.s390x 26/90 Verifying : libb2-0.98.1-7.fc37.s390x 27/90 Verifying : libmpc-1.2.1-5.fc37.s390x 28/90 Verifying : libuv-1:1.44.2-2.fc37.s390x 29/90 Verifying : libxcrypt-devel-4.4.33-5.fc38.s390x 30/90 Verifying : make-1:4.3-11.fc37.s390x 31/90 Verifying : mpdecimal-2.5.1-4.fc37.s390x 32/90 Verifying : ncurses-6.3-5.20221126.fc38.s390x 33/90 Verifying : perl-B-1.83-492.fc38.s390x 34/90 Verifying : perl-Carp-1.52-489.fc37.noarch 35/90 Verifying : 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Verifying : perl-constant-1.33-490.fc37.noarch 72/90 Verifying : perl-generators-1.15-1.fc38.noarch 73/90 Verifying : perl-if-0.61.000-492.fc38.noarch 74/90 Verifying : perl-interpreter-4:5.36.0-492.fc38.s390x 75/90 Verifying : perl-lib-0.65-492.fc38.s390x 76/90 Verifying : perl-libs-4:5.36.0-492.fc38.s390x 77/90 Verifying : perl-macros-4:5.36.0-492.fc38.noarch 78/90 Verifying : perl-mro-1.26-492.fc38.s390x 79/90 Verifying : perl-overload-1.35-492.fc38.noarch 80/90 Verifying : perl-overloading-0.02-492.fc38.noarch 81/90 Verifying : perl-parent-1:0.239-1.fc38.noarch 82/90 Verifying : perl-podlators-1:5.00-1.fc38.noarch 83/90 Verifying : perl-vars-1.05-492.fc38.noarch 84/90 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 85/90 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 86/90 Verifying : python3-3.11.1-1.fc38.s390x 87/90 Verifying : python3-libs-3.11.1-1.fc38.s390x 88/90 Verifying : rhash-1.4.3-1.fc38.s390x 89/90 Verifying : vim-filesystem-2:9.0.1054-1.fc38.noarch 90/90 Installed: annobin-docs-10.99-1.0.1.fc38.noarch annobin-plugin-gcc-10.99-1.0.1.fc38.s390x cmake-3.25.1-1.fc38.s390x cmake-data-3.25.1-1.fc38.noarch cmake-filesystem-3.25.1-1.fc38.s390x cmake-rpm-macros-3.25.1-1.fc38.noarch cpp-13.0.0-0.4.fc38.s390x emacs-filesystem-1:28.1-3.fc37.noarch expat-2.5.0-1.fc38.s390x gc-8.2.2-1.fc38.s390x gcc-13.0.0-0.4.fc38.s390x gcc-c++-13.0.0-0.4.fc38.s390x gcc-gfortran-13.0.0-0.4.fc38.s390x gcc-plugin-annobin-13.0.0-0.4.fc38.s390x glibc-devel-2.36.9000-18.fc38.s390x glibc-headers-s390-2.36.9000-18.fc38.noarch groff-base-1.22.4-10.fc37.s390x guile22-2.2.7-6.fc37.s390x jsoncpp-1.9.5-3.fc37.s390x kernel-headers-6.1.0-1.fc38.s390x libasan-13.0.0-0.4.fc38.s390x libatomic-13.0.0-0.4.fc38.s390x libb2-0.98.1-7.fc37.s390x libgfortran-13.0.0-0.4.fc38.s390x libmpc-1.2.1-5.fc37.s390x libstdc++-devel-13.0.0-0.4.fc38.s390x libtool-ltdl-2.4.7-3.0.1.fc38.s390x libubsan-13.0.0-0.4.fc38.s390x libuv-1:1.44.2-2.fc37.s390x libxcrypt-devel-4.4.33-5.fc38.s390x make-1:4.3-11.fc37.s390x mpdecimal-2.5.1-4.fc37.s390x ncurses-6.3-5.20221126.fc38.s390x perl-B-1.83-492.fc38.s390x perl-Carp-1.52-489.fc37.noarch perl-Class-Struct-0.66-492.fc38.noarch perl-Data-Dumper-2.184-490.fc37.s390x perl-DynaLoader-1.52-492.fc38.s390x perl-Encode-4:3.19-492.fc38.s390x perl-Errno-1.36-492.fc38.s390x perl-Exporter-5.77-489.fc37.noarch perl-Fcntl-1.15-492.fc38.s390x perl-Fedora-VSP-0.001-30.fc38.noarch perl-File-Basename-2.85-492.fc38.noarch perl-File-Path-2.18-489.fc37.noarch perl-File-Temp-1:0.231.100-489.fc37.noarch perl-File-stat-1.12-492.fc38.noarch perl-FindBin-1.53-492.fc38.noarch perl-Getopt-Long-1:2.54-1.fc38.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc37.noarch perl-IO-1.50-492.fc38.s390x perl-IPC-Open3-1.22-492.fc38.noarch perl-MIME-Base64-3.16-489.fc37.s390x perl-Math-Complex-1.59-492.fc38.noarch perl-POSIX-2.03-492.fc38.s390x perl-PathTools-3.84-489.fc37.s390x perl-Pod-Escapes-1:1.07-489.fc37.noarch perl-Pod-Perldoc-3.28.01-490.fc37.noarch perl-Pod-Simple-1:3.43-490.fc37.noarch perl-Pod-Usage-4:2.03-3.fc37.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.s390x perl-SelectSaver-1.02-492.fc38.noarch perl-Socket-4:2.036-1.fc38.s390x perl-Storable-1:3.26-489.fc37.s390x perl-Symbol-1.09-492.fc38.noarch perl-Term-ANSIColor-5.01-490.fc37.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch perl-Time-Local-2:1.300-489.fc37.noarch perl-constant-1.33-490.fc37.noarch perl-generators-1.15-1.fc38.noarch perl-if-0.61.000-492.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.s390x perl-lib-0.65-492.fc38.s390x perl-libs-4:5.36.0-492.fc38.s390x perl-macros-4:5.36.0-492.fc38.noarch perl-mro-1.26-492.fc38.s390x perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.239-1.fc38.noarch perl-podlators-1:5.00-1.fc38.noarch perl-vars-1.05-492.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.s390x python3-libs-3.11.1-1.fc38.s390x rhash-1.4.3-1.fc38.s390x vim-filesystem-2:9.0.1054-1.fc38.noarch Complete! Finish: build setup for bionetgen-2.8.4-3.fc38.src.rpm Start: rpmbuild bionetgen-2.8.4-3.fc38.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1670716800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RIZ9Bz + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-2.8.4 + /usr/bin/mkdir -p bionetgen-2.8.4 + cd bionetgen-2.8.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bionetgen-BioNetGen-2.8.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd bionetgen-BioNetGen-2.8.4 ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4 ~/build/BUILD/bionetgen-2.8.4 + rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.zip + tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3 cvode-2.6.0/README cvode-2.6.0/INSTALL_NOTES cvode-2.6.0/LICENSE cvode-2.6.0/Makefile.in cvode-2.6.0/configure.ac cvode-2.6.0/acinclude.m4 cvode-2.6.0/config.hin cvode-2.6.0/configure cvode-2.6.0/CMakeLists.txt cvode-2.6.0/config/config.guess cvode-2.6.0/config/config.sub cvode-2.6.0/config/install-sh cvode-2.6.0/config/mkinstalldirs cvode-2.6.0/config/rminstalldirs cvode-2.6.0/config/ltmain.sh cvode-2.6.0/config/mod_c.m4 cvode-2.6.0/config/mod_fortran.m4 cvode-2.6.0/config/cust_general.m4 cvode-2.6.0/config/CheckFortranFunctionExists.cmake cvode-2.6.0/config/SundialsFortran.cmake cvode-2.6.0/config/SundialsLapack.cmake cvode-2.6.0/config/SundialsMPIC.cmake cvode-2.6.0/config/SundialsMPIF.cmake cvode-2.6.0/config/FindLAPACK.cmake cvode-2.6.0/config/FindBLAS.cmake cvode-2.6.0/config/FindMPI.cmake cvode-2.6.0/bin/sundials-config.in cvode-2.6.0/bin/fortran-update.in cvode-2.6.0/bin/makefile-update.in cvode-2.6.0/include/sundials/sundials_config.in cvode-2.6.0/include/sundials/sundials_types.h cvode-2.6.0/include/sundials/sundials_math.h cvode-2.6.0/include/sundials/sundials_nvector.h cvode-2.6.0/include/sundials/sundials_fnvector.h cvode-2.6.0/include/sundials/sundials_dense.h cvode-2.6.0/include/sundials/sundials_direct.h cvode-2.6.0/include/sundials/sundials_band.h cvode-2.6.0/include/sundials/sundials_lapack.h cvode-2.6.0/include/sundials/sundials_spgmr.h cvode-2.6.0/include/sundials/sundials_spbcgs.h cvode-2.6.0/include/sundials/sundials_sptfqmr.h cvode-2.6.0/include/sundials/sundials_iterative.h cvode-2.6.0/include/nvector/nvector_serial.h cvode-2.6.0/include/nvector/nvector_parallel.h cvode-2.6.0/src/sundials/README cvode-2.6.0/src/sundials/Makefile.in cvode-2.6.0/src/sundials/CMakeLists.txt cvode-2.6.0/src/sundials/sundials_math.c cvode-2.6.0/src/sundials/sundials_nvector.c cvode-2.6.0/src/sundials/sundials_dense.c cvode-2.6.0/src/sundials/sundials_direct.c cvode-2.6.0/src/sundials/sundials_band.c cvode-2.6.0/src/sundials/sundials_spgmr.c cvode-2.6.0/src/sundials/sundials_spbcgs.c cvode-2.6.0/src/sundials/sundials_sptfqmr.c cvode-2.6.0/src/sundials/sundials_iterative.c cvode-2.6.0/src/nvec_ser/README cvode-2.6.0/src/nvec_ser/Makefile.in cvode-2.6.0/src/nvec_ser/CMakeLists.txt cvode-2.6.0/src/nvec_ser/fnvector_serial.h cvode-2.6.0/src/nvec_ser/nvector_serial.c cvode-2.6.0/src/nvec_ser/fnvector_serial.c cvode-2.6.0/src/nvec_par/README cvode-2.6.0/src/nvec_par/Makefile.in cvode-2.6.0/src/nvec_par/CMakeLists.txt cvode-2.6.0/src/nvec_par/fnvector_parallel.h cvode-2.6.0/src/nvec_par/nvector_parallel.c cvode-2.6.0/src/nvec_par/fnvector_parallel.c cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in cvode-2.6.0/examples/templates/makefile_serial_C_ex.in cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in cvode-2.6.0/doc/cvode/cv_guide.pdf cvode-2.6.0/doc/cvode/cv_examples.pdf cvode-2.6.0/include/cvode/cvode.h cvode-2.6.0/include/cvode/cvode_direct.h cvode-2.6.0/include/cvode/cvode_dense.h cvode-2.6.0/include/cvode/cvode_band.h cvode-2.6.0/include/cvode/cvode_lapack.h cvode-2.6.0/include/cvode/cvode_diag.h cvode-2.6.0/include/cvode/cvode_spgmr.h cvode-2.6.0/include/cvode/cvode_spbcgs.h cvode-2.6.0/include/cvode/cvode_sptfqmr.h cvode-2.6.0/include/cvode/cvode_spils.h cvode-2.6.0/include/cvode/cvode_bandpre.h cvode-2.6.0/include/cvode/cvode_bbdpre.h cvode-2.6.0/src/cvode/LICENSE cvode-2.6.0/src/cvode/README cvode-2.6.0/src/cvode/Makefile.in cvode-2.6.0/src/cvode/CMakeLists.txt cvode-2.6.0/src/cvode/cvode.c cvode-2.6.0/src/cvode/cvode_io.c cvode-2.6.0/src/cvode/cvode_direct.c cvode-2.6.0/src/cvode/cvode_dense.c cvode-2.6.0/src/cvode/cvode_band.c cvode-2.6.0/src/cvode/cvode_lapack.c cvode-2.6.0/src/cvode/cvode_diag.c cvode-2.6.0/src/cvode/cvode_spils.c cvode-2.6.0/src/cvode/cvode_spgmr.c cvode-2.6.0/src/cvode/cvode_spbcgs.c cvode-2.6.0/src/cvode/cvode_sptfqmr.c cvode-2.6.0/src/cvode/cvode_bandpre.c cvode-2.6.0/src/cvode/cvode_bbdpre.c cvode-2.6.0/src/cvode/cvode_impl.h cvode-2.6.0/src/cvode/cvode_direct_impl.h cvode-2.6.0/src/cvode/cvode_diag_impl.h cvode-2.6.0/src/cvode/cvode_spils_impl.h cvode-2.6.0/src/cvode/cvode_bandpre_impl.h cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h cvode-2.6.0/src/cvode/fcmix/Makefile.in cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt cvode-2.6.0/src/cvode/fcmix/fcvode.c cvode-2.6.0/src/cvode/fcmix/fcvewt.c cvode-2.6.0/src/cvode/fcmix/fcvpreco.c cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c cvode-2.6.0/src/cvode/fcmix/fcvband.c cvode-2.6.0/src/cvode/fcmix/fcvdense.c cvode-2.6.0/src/cvode/fcmix/fcvlapack.c cvode-2.6.0/src/cvode/fcmix/fcvlapband.c cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c cvode-2.6.0/src/cvode/fcmix/fcvbp.c cvode-2.6.0/src/cvode/fcmix/fcvbbd.c cvode-2.6.0/src/cvode/fcmix/fcvroot.c cvode-2.6.0/src/cvode/fcmix/fcvode.h cvode-2.6.0/src/cvode/fcmix/fcvbp.h cvode-2.6.0/src/cvode/fcmix/fcvbbd.h cvode-2.6.0/src/cvode/fcmix/fcvroot.h cvode-2.6.0/examples/cvode/serial/README cvode-2.6.0/examples/cvode/serial/Makefile.in cvode-2.6.0/examples/cvode/serial/CMakeLists.txt cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out cvode-2.6.0/examples/cvode/fcmix_serial/README cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out cvode-2.6.0/examples/cvode/parallel/README cvode-2.6.0/examples/cvode/parallel/Makefile.in cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/README cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out + tar -xvf bng2/libsource/muparser_v2_2_4.tar.gz -C bng2/Network3 muparser_v2_2_4/._Changes.txt muparser_v2_2_4/Changes.txt muparser_v2_2_4/._Install.txt muparser_v2_2_4/Install.txt muparser_v2_2_4/._License.txt muparser_v2_2_4/License.txt muparser_v2_2_4/._Makefile.in muparser_v2_2_4/Makefile.in muparser_v2_2_4/._build muparser_v2_2_4/build/ muparser_v2_2_4/build/._autoconf muparser_v2_2_4/build/autoconf/ muparser_v2_2_4/build/._bakefiles muparser_v2_2_4/build/bakefiles/ muparser_v2_2_4/build/._makefile.mingw muparser_v2_2_4/build/makefile.mingw muparser_v2_2_4/build/._makefile.vc muparser_v2_2_4/build/makefile.vc muparser_v2_2_4/build/._msvc2013 muparser_v2_2_4/build/msvc2013/ muparser_v2_2_4/build/._obj muparser_v2_2_4/build/obj/ muparser_v2_2_4/build/msvc2013/._muparser.sln muparser_v2_2_4/build/msvc2013/muparser.sln muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj muparser_v2_2_4/build/msvc2013/._muparser_example1.vcxproj.filters muparser_v2_2_4/build/msvc2013/muparser_example1.vcxproj.filters muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj muparser_v2_2_4/build/msvc2013/._muparser_example2.vcxproj.filters muparser_v2_2_4/build/msvc2013/muparser_example2.vcxproj.filters muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj muparser_v2_2_4/build/msvc2013/._muparser_muParser.vcxproj.filters muparser_v2_2_4/build/msvc2013/muparser_muParser.vcxproj.filters muparser_v2_2_4/build/bakefiles/._Bakefiles.bkgen muparser_v2_2_4/build/bakefiles/Bakefiles.bkgen muparser_v2_2_4/build/bakefiles/._howto.txt muparser_v2_2_4/build/bakefiles/howto.txt muparser_v2_2_4/build/bakefiles/._muparser.bkl muparser_v2_2_4/build/bakefiles/muparser.bkl muparser_v2_2_4/build/bakefiles/._presets muparser_v2_2_4/build/bakefiles/presets/ muparser_v2_2_4/build/bakefiles/presets/._debugopt.bkl muparser_v2_2_4/build/bakefiles/presets/debugopt.bkl muparser_v2_2_4/build/bakefiles/presets/._setbuilddir.bkl muparser_v2_2_4/build/bakefiles/presets/setbuilddir.bkl muparser_v2_2_4/build/bakefiles/presets/._sharedopt.bkl muparser_v2_2_4/build/bakefiles/presets/sharedopt.bkl muparser_v2_2_4/build/bakefiles/presets/._unicodeopt.bkl muparser_v2_2_4/build/bakefiles/presets/unicodeopt.bkl muparser_v2_2_4/build/autoconf/._aclocal.m4 muparser_v2_2_4/build/autoconf/aclocal.m4 muparser_v2_2_4/build/autoconf/._acregen.sh muparser_v2_2_4/build/autoconf/acregen.sh muparser_v2_2_4/build/autoconf/._autoconf_inc.m4 muparser_v2_2_4/build/autoconf/autoconf_inc.m4 muparser_v2_2_4/build/autoconf/._bakefile-presets.m4 muparser_v2_2_4/build/autoconf/bakefile-presets.m4 muparser_v2_2_4/build/autoconf/._config.guess muparser_v2_2_4/build/autoconf/config.guess muparser_v2_2_4/build/autoconf/._config.sub muparser_v2_2_4/build/autoconf/config.sub muparser_v2_2_4/build/autoconf/._configure.ac muparser_v2_2_4/build/autoconf/configure.ac muparser_v2_2_4/build/autoconf/._install-sh muparser_v2_2_4/build/autoconf/install-sh muparser_v2_2_4/build/autoconf/._muparser.pc.in muparser_v2_2_4/build/autoconf/muparser.pc.in muparser_v2_2_4/._configure muparser_v2_2_4/configure muparser_v2_2_4/._docs muparser_v2_2_4/docs/ muparser_v2_2_4/docs/._Doxyfile muparser_v2_2_4/docs/Doxyfile muparser_v2_2_4/docs/._muparser_doc.html muparser_v2_2_4/docs/muparser_doc.html muparser_v2_2_4/._include muparser_v2_2_4/include/ muparser_v2_2_4/include/._muParser.h muparser_v2_2_4/include/muParser.h muparser_v2_2_4/include/._muParserBase.h muparser_v2_2_4/include/muParserBase.h muparser_v2_2_4/include/._muParserBytecode.h muparser_v2_2_4/include/muParserBytecode.h muparser_v2_2_4/include/._muParserCallback.h muparser_v2_2_4/include/muParserCallback.h muparser_v2_2_4/include/._muParserDef.h muparser_v2_2_4/include/muParserDef.h muparser_v2_2_4/include/._muParserDLL.h muparser_v2_2_4/include/muParserDLL.h muparser_v2_2_4/include/._muParserError.h muparser_v2_2_4/include/muParserError.h muparser_v2_2_4/include/._muParserFixes.h muparser_v2_2_4/include/muParserFixes.h muparser_v2_2_4/include/._muParserInt.h muparser_v2_2_4/include/muParserInt.h muparser_v2_2_4/include/._muParserStack.h muparser_v2_2_4/include/muParserStack.h muparser_v2_2_4/include/._muParserTemplateMagic.h muparser_v2_2_4/include/muParserTemplateMagic.h muparser_v2_2_4/include/._muParserTest.h muparser_v2_2_4/include/muParserTest.h muparser_v2_2_4/include/._muParserToken.h muparser_v2_2_4/include/muParserToken.h muparser_v2_2_4/include/._muParserTokenReader.h muparser_v2_2_4/include/muParserTokenReader.h muparser_v2_2_4/._lib muparser_v2_2_4/lib/ muparser_v2_2_4/lib/._Readme.txt muparser_v2_2_4/lib/Readme.txt muparser_v2_2_4/._samples muparser_v2_2_4/samples/ muparser_v2_2_4/samples/._example1 muparser_v2_2_4/samples/example1/ muparser_v2_2_4/samples/._example2 muparser_v2_2_4/samples/example2/ muparser_v2_2_4/samples/example2/._example2.c muparser_v2_2_4/samples/example2/example2.c muparser_v2_2_4/samples/example2/._muparser32.dll muparser_v2_2_4/samples/example2/muparser32.dll muparser_v2_2_4/samples/example2/._muparser32.lib muparser_v2_2_4/samples/example2/muparser32.lib muparser_v2_2_4/samples/example2/._muparser64.dll muparser_v2_2_4/samples/example2/muparser64.dll muparser_v2_2_4/samples/example2/._muparser64.lib muparser_v2_2_4/samples/example2/muparser64.lib muparser_v2_2_4/samples/example2/._muparserd32.dll muparser_v2_2_4/samples/example2/muparserd32.dll muparser_v2_2_4/samples/example2/._muparserd32.lib muparser_v2_2_4/samples/example2/muparserd32.lib muparser_v2_2_4/samples/example2/._muparserd64.dll muparser_v2_2_4/samples/example2/muparserd64.dll muparser_v2_2_4/samples/example2/._muparserd64.lib muparser_v2_2_4/samples/example2/muparserd64.lib muparser_v2_2_4/samples/example2/._Readme.txt muparser_v2_2_4/samples/example2/Readme.txt muparser_v2_2_4/samples/example1/._example1.cpp muparser_v2_2_4/samples/example1/example1.cpp muparser_v2_2_4/._src muparser_v2_2_4/src/ muparser_v2_2_4/src/._muParser.cpp muparser_v2_2_4/src/muParser.cpp muparser_v2_2_4/src/._muParserBase.cpp muparser_v2_2_4/src/muParserBase.cpp muparser_v2_2_4/src/._muParserBytecode.cpp muparser_v2_2_4/src/muParserBytecode.cpp muparser_v2_2_4/src/._muParserCallback.cpp muparser_v2_2_4/src/muParserCallback.cpp muparser_v2_2_4/src/._muParserDLL.cpp muparser_v2_2_4/src/muParserDLL.cpp muparser_v2_2_4/src/._muParserError.cpp muparser_v2_2_4/src/muParserError.cpp muparser_v2_2_4/src/._muParserInt.cpp muparser_v2_2_4/src/muParserInt.cpp muparser_v2_2_4/src/._muParserTest.cpp muparser_v2_2_4/src/muParserTest.cpp muparser_v2_2_4/src/._muParserTokenReader.cpp muparser_v2_2_4/src/muParserTokenReader.cpp + echo 'Patch #0 (bionetgen-fix_linker.patch):' Patch #0 (bionetgen-fix_linker.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file bng2/Network3/CMakeLists.txt + echo 'Patch #1 (bionetgen-fix_cmake_minimum.patch):' Patch #1 (bionetgen-fix_cmake_minimum.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file bng2/Network3/CMakeLists.txt patching file bng2/Network3/cvode-2.6.0/CMakeLists.txt + echo 'Patch #2 (bionetgen-cmake-c99.patch):' Patch #2 (bionetgen-cmake-c99.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .c99 --fuzz=0 patching file bng2/Network3/cvode-2.6.0/config/SundialsFortran.cmake + rm -f bng2/libsource/cvode-2.6.0.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz + popd ~/build/BUILD/bionetgen-2.8.4 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.odseyd + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.8.4 ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 ~/build/BUILD/bionetgen-2.8.4 + pushd bionetgen-BioNetGen-2.8.4/bng2/Network3 + cd muparser_v2_2_4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build/autoconf/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build/autoconf/config.sub ++ basename ./build/autoconf/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build/autoconf/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build/autoconf/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build/autoconf/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build/autoconf/config.guess ++ basename ./build/autoconf/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build/autoconf/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build/autoconf/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure + ./configure --build=s390x-redhat-linux-gnu --host=s390x-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared=no --enable-static=yes --enable-samples=no configure: WARNING: unrecognized options: --enable-static checking build system type... s390x-redhat-linux-gnu checking host system type... s390x-redhat-linux-gnu checking target system type... s390x-redhat-linux-gnu checking for gawk... gawk checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking for s390x-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for s390x-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking for the --enable-debug option... no checking for the --enable-shared option... no checking for the --enable-samples option... no checking whether we are using the Intel C compiler... no checking whether we are using the Intel C++ compiler... no checking whether we are using the Sun C++ compiler... no checking for s390x-redhat-linux-gnu-ranlib... ranlib checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for s390x-redhat-linux-gnu-ar... no checking for ar... ar checking for s390x-redhat-linux-gnu-strip... no checking for strip... strip checking for s390x-redhat-linux-gnu-nm... no checking for nm... nm checking for command to install directories... /usr/bin/install -c -d checking if make is GNU make... egrep: warning: egrep is obsolescent; using grep -E yes checking for dependency tracking method... disabled configure: creating ./config.status config.status: creating Makefile config.status: creating build/autoconf/muparser.pc ---------------------------------------------------------------- Configuration for muparser 2.2.4 successfully completed. configure: WARNING: unrecognized options: --enable-static Summary of main configuration settings for muparser: - STATIC mode - RELEASE build - SAMPLES disabled Now, just run make. ---------------------------------------------------------------- + /usr/bin/make -O -j2 V=1 VERBOSE=1 g++ -c -o muParser_lib_muParser.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParser.cpp In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./include/muParser.h:32, from ./src/muParser.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ g++ -c -o muParser_lib_muParserBytecode.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserBytecode.cpp In file included from ./include/muParserBytecode.h:35, from ./src/muParserBytecode.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserError.h:34, from ./include/muParserBytecode.h:34: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserBytecode.cpp: In member function 'void mu::ParserByteCode::AddOp(mu::ECmdCode)': ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLE' not handled in switch [-Wswitch] 213 | switch(a_Oprt) | ^ ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmGE' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmNEQ' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmEQ' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLT' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmGT' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLAND' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmLOR' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmASSIGN' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmBO' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmBC' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmIF' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmELSE' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmENDIF' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmARG_SEP' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVAR' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVAL' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW2' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW3' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARPOW4' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmVARMUL' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmPOW2' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC_STR' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmFUNC_BULK' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmSTRING' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_BIN' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_POSTFIX' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmOPRT_INFIX' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmEND' not handled in switch [-Wswitch] ./src/muParserBytecode.cpp:213:15: warning: enumeration value 'cmUNKNOWN' not handled in switch [-Wswitch] g++ -c -o muParser_lib_muParserCallback.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserCallback.cpp g++ -c -o muParser_lib_muParserDLL.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserDLL.cpp g++ -c -o muParser_lib_muParserError.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserError.cpp g++ -c -o muParser_lib_muParserBase.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserBase.cpp In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./src/muParserBase.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserBase.cpp: In member function 'void mu::ParserBase::ApplyFunc(mu::ParserStack > >&, mu::ParserStack > >&, int) const': ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLE' not handled in switch [-Wswitch] 838 | switch(funTok.GetCode()) | ^ ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmGE' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmNEQ' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmEQ' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLT' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmGT' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmADD' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmSUB' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmMUL' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmDIV' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmPOW' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLAND' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmLOR' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmASSIGN' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmBO' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmBC' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmIF' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmELSE' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmENDIF' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmARG_SEP' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVAR' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVAL' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW2' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW3' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARPOW4' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmVARMUL' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmPOW2' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmSTRING' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmEND' not handled in switch [-Wswitch] ./src/muParserBase.cpp:838:11: warning: enumeration value 'cmUNKNOWN' not handled in switch [-Wswitch] g++ -c -o muParser_lib_muParserInt.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserInt.cpp In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./include/muParserInt.h:29, from ./src/muParserInt.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ g++ -c -o muParser_lib_muParserTokenReader.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserTokenReader.cpp In file included from ./include/muParserTokenReader.h:39, from ./src/muParserTokenReader.cpp:32: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserTokenReader.h:34: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ./src/muParserTokenReader.cpp:33: ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserTokenReader.cpp: In member function 'mu::ParserTokenReader* mu::ParserTokenReader::Clone(mu::ParserBase*) const': ./src/muParserTokenReader.cpp:150:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 150 | std::auto_ptr ptr(new ParserTokenReader(*this)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ g++ -c -o muParser_lib_muParserTest.o -DNDEBUG -I./include -O2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ./src/muParserTest.cpp ./src/muParserTest.cpp:1387: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 1387 | #pragma warning(push) | ./src/muParserTest.cpp:1388: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 1388 | #pragma warning(disable:4127) | ./src/muParserTest.cpp:1390: warning: ignoring '#pragma warning ' [-Wunknown-pragmas] 1390 | #pragma warning(pop) | In file included from ./include/muParserStack.h:35, from ./include/muParserBase.h:39, from ./include/muParser.h:32, from ./include/muParserTest.h:32, from ./src/muParserTest.cpp:26: ./include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ./include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ./src/muParserTest.cpp: In member function 'int mu::Test::ParserTester::EqnTest(const mu::string_type&, double, bool)': ./src/muParserTest.cpp:1261:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1261 | std::auto_ptr p1; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ rm -f lib/libmuparser.a ar rcu lib/libmuparser.a muParser_lib_muParser.o muParser_lib_muParserBase.o muParser_lib_muParserBytecode.o muParser_lib_muParserCallback.o muParser_lib_muParserDLL.o muParser_lib_muParserError.o muParser_lib_muParserInt.o muParser_lib_muParserTest.o muParser_lib_muParserTokenReader.o ranlib lib/libmuparser.a + cd ../ + make -j1 -C src/util/mathutils make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/mathutils' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o allocate.o allocate.c allocate.c: In function 'ALLOC_MATRIX': allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] 9 | register int i,j; | ^ allocate.c: In function 'IALLOC_MATRIX': allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] 100 | register int i,j; | ^ allocate.c: In function 'ZALLOC_MATRIX': allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] 191 | register int i,j; | ^ In file included from allocate.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a allocate.o ar: creating libmathutils.a a - allocate.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cabs.o cabs.c In file included from cabs.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cabs.o a - cabs.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cadd.o cadd.c In file included from cadd.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cadd.o a - cadd.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cconj.o cconj.c In file included from cconj.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cconj.o a - cconj.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cmult.o cmult.c In file included from cmult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cmult.o a - cmult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o complex_zero.o complex_zero.c In file included from complex_zero.c:2: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a complex_zero.o a - complex_zero.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o copy_vector.o copy_vector.c In file included from copy_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a copy_vector.o a - copy_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o cprob.o cprob.c In file included from cprob.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a cprob.o a - cprob.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o csub.o csub.c In file included from csub.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a csub.o a - csub.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o dotp.o dotp.c In file included from dotp.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a dotp.o a - dotp.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o eigensystem.o eigensystem.c In file included from eigensystem.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a eigensystem.o a - eigensystem.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o expi.o expi.c In file included from expi.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a expi.o a - expi.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o gram_schmidt.o gram_schmidt.c In file included from gram_schmidt.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a gram_schmidt.o a - gram_schmidt.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o herm_matrix_mult.o herm_matrix_mult.c In file included from herm_matrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a herm_matrix_mult.o a - herm_matrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o herm_matrix_vector_mult.o herm_matrix_vector_mult.c In file included from herm_matrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a herm_matrix_vector_mult.o a - herm_matrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o icmult.o icmult.c In file included from icmult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a icmult.o a - icmult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o init.o init.c In file included from init.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a init.o a - init.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o integration.o integration.c In file included from integration.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a integration.o a - integration.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o linsolve.o linsolve.c linsolve.c: In function 'LINSOLVE': linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] 16 | register int i,j; | ^ linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] 16 | register int i,j; | ^ In file included from linsolve.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a linsolve.o a - linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matherr.o matherr.c In file included from matherr.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matherr.o a - matherr.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_add.o matrix_add.c In file included from matrix_add.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_add.o a - matrix_add.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_elt.o matrix_elt.c In file included from matrix_elt.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_elt.o a - matrix_elt.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_mult.o matrix_mult.c In file included from matrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_mult.o a - matrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_sub.o matrix_sub.c In file included from matrix_sub.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_sub.o a - matrix_sub.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_transpose.o matrix_transpose.c In file included from matrix_transpose.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_transpose.o a - matrix_transpose.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrix_vector_mult.o matrix_vector_mult.c In file included from matrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrix_vector_mult.o a - matrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o matrixexp.o matrixexp.c In file included from matrixexp.c:5: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a matrixexp.o a - matrixexp.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o minimum.o minimum.c minimum.c: In function 'MIN_BRACKET': minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] 17 | double ulim,u,r,q,fu,dum; | ^~~ In file included from minimum.c:3: mathutils.h: At top level: mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a minimum.o a - minimum.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o norm.o norm.c norm.c: In function 'NORM': norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] 14 | double norm; | ^~~~ In file included from norm.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a norm.o a - norm.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o normsq.o normsq.c normsq.c: In function 'NORMSQ': normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] 13 | double norm; | ^~~~ In file included from normsq.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a normsq.o a - normsq.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o project.o project.c In file included from project.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a project.o a - project.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o random.o random.c In file included from random.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a random.o a - random.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o rcmult.o rcmult.c In file included from rcmult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a rcmult.o a - rcmult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o rect_transpose.o rect_transpose.c rect_transpose.c: In function 'RECT_TRANSPOSE': rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~~ rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] 5 | double **At, *Aptr, *Atptr; | ^~~~ In file included from rect_transpose.c:1: mathutils.h: At top level: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a rect_transpose.o a - rect_transpose.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o roots.o roots.c In file included from roots.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ roots.c: In function 'ROOT_FIND': roots.c:55:13: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized] 55 | if (fabs(e) >= tol1 && fabs(fa) > fabs(fb)) { | ^~~~~~~ roots.c:32:29: note: 'e' was declared here 32 | double a=x1,b=x2,c=x2,d,e,min1,min2; | ^ ar rv libmathutils.a roots.o a - roots.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o runge-kutta.o runge-kutta.c In file included from runge-kutta.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a runge-kutta.o a - runge-kutta.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o scale_vector.o scale_vector.c In file included from scale_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a scale_vector.o a - scale_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o splines.o splines.c In file included from splines.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a splines.o a - splines.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sum_vector.o sum_vector.c In file included from sum_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sum_vector.o a - sum_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o svd.o svd.c In file included from svd.c:2: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ ar rv libmathutils.a svd.o a - svd.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_linsolve.o sym_linsolve.c In file included from sym_linsolve.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sym_linsolve.o a - sym_linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_matrix_mult.o sym_matrix_mult.c In file included from sym_matrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sym_matrix_mult.o a - sym_matrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sym_matrix_vector_mult.o sym_matrix_vector_mult.c In file included from sym_matrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sym_matrix_vector_mult.o a - sym_matrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o sympos_linsolve.o sympos_linsolve.c In file included from sympos_linsolve.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a sympos_linsolve.o a - sympos_linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o vector_add.o vector_add.c In file included from vector_add.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a vector_add.o a - vector_add.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o vector_dist.o vector_dist.c In file included from vector_dist.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a vector_dist.o a - vector_dist.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zcopy_vector.o zcopy_vector.c In file included from zcopy_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zcopy_vector.o a - zcopy_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zdotc.o zdotc.c In file included from zdotc.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zdotc.o a - zdotc.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zdotu.o zdotu.c In file included from zdotu.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zdotu.o a - zdotu.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_mult.o zmatrix_mult.c In file included from zmatrix_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_mult.o a - zmatrix_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_transpose.o zmatrix_transpose.c In file included from zmatrix_transpose.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_transpose.o a - zmatrix_transpose.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_vector_mult.o zmatrix_vector_mult.c In file included from zmatrix_vector_mult.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_vector_mult.o a - zmatrix_vector_mult.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o znorm.o znorm.c In file included from znorm.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a znorm.o a - znorm.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o znormsq.o znormsq.c In file included from znormsq.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a znormsq.o a - znormsq.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zrscale_vector.o zrscale_vector.c In file included from zrscale_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zrscale_vector.o a - zrscale_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zscale_vector.o zscale_vector.c In file included from zscale_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zscale_vector.o a - zscale_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zsum_vector.o zsum_vector.c In file included from zsum_vector.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zsum_vector.o a - zsum_vector.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zsym_linsolve.o zsym_linsolve.c In file included from zsym_linsolve.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zsym_linsolve.o a - zsym_linsolve.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_add.o zmatrix_add.c In file included from zmatrix_add.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_add.o a - zmatrix_add.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o zmatrix_sub.o zmatrix_sub.c In file included from zmatrix_sub.c:1: mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ ar rv libmathutils.a zmatrix_sub.o a - zmatrix_sub.o ranlib ./libmathutils.a make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/mathutils' ++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + mkdir -p cvode-2.6.0/build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B cvode-2.6.0/build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -S cvode-2.6.0 -B cvode-2.6.0/build '-DCMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' -DCMAKE_INSTALL_PREFIX=/usr -DEXAMPLES_ENABLE=OFF -DEXAMPLES_INSTALL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON -DMPI_ENABLE:BOOL=OFF -DFCMIX_ENABLE:BOOL=ON CMake Warning: Ignoring extra path from command line: "/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3" -- The C compiler identification is GNU 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- The Fortran compiler identification is GNU 13.0.0 -- Searching for a Fortran compiler... /usr/bin/gfortran -- Trying to compile and link a simple Fortran program... OK CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/FortranTest/CMakeLists.txt: No cmake_minimum_required command is present. A line of code such as cmake_minimum_required(VERSION 3.25) should be added at the top of the file. The version specified may be lower if you wish to support older CMake versions for this project. For more information run "cmake --help-policy CMP0000". This warning is for project developers. Use -Wno-dev to suppress it. -- Determining Fortran name-mangling scheme... OK -- Added NVECTOR_SERIAL module -- Added CVODE module -- Added CVODE FCMIX module -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_MODULE_LINKER_FLAGS INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build + /usr/bin/cmake --build cvode-2.6.0/build -j2 --verbose /usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 -B/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/depend /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/build.make src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/build [ 2%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/nvector_serial.c gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 5%] Building C object src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -MF CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o.d -o CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/fnvector_serial.c [ 8%] Linking C static library libsundials_fnvecserial.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_fnvecserial_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fnvecserial_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_fnvecserial.a CMakeFiles/sundials_fnvecserial_static.dir/fnvector_serial.c.o /usr/bin/ranlib libsundials_fnvecserial.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 8%] Built target sundials_fnvecserial_static /usr/bin/gmake -f src/cvode/CMakeFiles/sundials_cvode_static.dir/build.make src/cvode/CMakeFiles/sundials_cvode_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/CMakeFiles/sundials_cvode_static.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/cvode/CMakeFiles/sundials_cvode_static.dir/build.make src/cvode/CMakeFiles/sundials_cvode_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 10%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode.c [ 13%] Building C object src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser/. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/nvec_ser/CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c [ 16%] Linking C static library libsundials_nvecserial.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -P CMakeFiles/sundials_nvecserial_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/nvec_ser && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_nvecserial_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_nvecserial.a CMakeFiles/sundials_nvecserial_static.dir/nvector_serial.c.o CMakeFiles/sundials_nvecserial_static.dir/__/sundials/sundials_math.c.o /usr/bin/ranlib libsundials_nvecserial.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 16%] Built target sundials_nvecserial_static /usr/bin/gmake -f src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/build.make src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/gmake -f src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/build.make src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 18%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c: In function 'fcvbandsetjac_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvband.c:48:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 48 | CVodeMem cv_mem; | ^~~~~~ [ 21%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbbd.c [ 24%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvbp.c [ 27%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c: In function 'fcvdensesetjac_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvdense.c:48:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 48 | CVodeMem cv_mem; | ^~~~~~ [ 29%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c: In function 'fcvewtset_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvewt.c:46:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 46 | CVodeMem cv_mem; | ^~~~~~ [ 32%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c: In function 'fcvspilssetjac_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c:52:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 52 | CVodeMem cv_mem; | ^~~~~~ [ 35%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvode.c [ 37%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c: In function 'fcvspilssetprec_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvpreco.c:59:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 59 | CVodeMem cv_mem; | ^~~~~~ [ 40%] Building C object src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/fcmix/CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -MF CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o.d -o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c: In function 'fcvrootinit_': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix/fcvroot.c:44:12: warning: variable 'cv_mem' set but not used [-Wunused-but-set-variable] 44 | CVodeMem cv_mem; | ^~~~~~ [ 43%] Linking C static library libsundials_fcvode.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -P CMakeFiles/sundials_fcvode_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode/fcmix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_fcvode_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_fcvode.a CMakeFiles/sundials_fcvode_static.dir/fcvband.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbbd.c.o CMakeFiles/sundials_fcvode_static.dir/fcvbp.c.o CMakeFiles/sundials_fcvode_static.dir/fcvdense.c.o CMakeFiles/sundials_fcvode_static.dir/fcvewt.c.o CMakeFiles/sundials_fcvode_static.dir/fcvjtimes.c.o CMakeFiles/sundials_fcvode_static.dir/fcvode.c.o CMakeFiles/sundials_fcvode_static.dir/fcvpreco.c.o CMakeFiles/sundials_fcvode_static.dir/fcvroot.c.o /usr/bin/ranlib libsundials_fcvode.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [ 43%] Built target sundials_fcvode_static [ 45%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_io.c [ 48%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_direct.c [ 51%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_band.c [ 54%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_dense.c [ 56%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_diag.c [ 59%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spils.c [ 62%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spbcgs.c [ 64%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_spgmr.c [ 67%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_sptfqmr.c [ 70%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o -MF CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o.d -o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/cvode_bbdpre.c [ 75%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_nvector.c [ 78%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_math.c [ 81%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_direct.c [ 83%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_band.c [ 86%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_dense.c [ 89%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_iterative.c [ 91%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spbcgs.c [ 94%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c [ 97%] Building C object src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/gcc -DBUILD_SUNDIALS_LIBRARY -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/. -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/../sundials -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -MD -MT src/cvode/CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -MF CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o.d -o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_sptfqmr.c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c: In function 'SpgmrFree': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c:439:29: warning: variable 'yg' set but not used [-Wunused-but-set-variable] 439 | realtype **Hes, *givens, *yg; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials/sundials_spgmr.c:439:20: warning: variable 'givens' set but not used [-Wunused-but-set-variable] 439 | realtype **Hes, *givens, *yg; | ^~~~~~ [100%] Linking C static library libsundials_cvode.a cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -P CMakeFiles/sundials_cvode_static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/src/cvode && /usr/bin/cmake -E cmake_link_script CMakeFiles/sundials_cvode_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsundials_cvode.a CMakeFiles/sundials_cvode_static.dir/cvode.c.o CMakeFiles/sundials_cvode_static.dir/cvode_io.c.o CMakeFiles/sundials_cvode_static.dir/cvode_direct.c.o CMakeFiles/sundials_cvode_static.dir/cvode_band.c.o CMakeFiles/sundials_cvode_static.dir/cvode_dense.c.o CMakeFiles/sundials_cvode_static.dir/cvode_diag.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spils.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/cvode_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_sptfqmr.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bandpre.c.o CMakeFiles/sundials_cvode_static.dir/cvode_bbdpre.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_nvector.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_math.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_direct.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_band.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_dense.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_iterative.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spbcgs.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_spgmr.c.o CMakeFiles/sundials_cvode_static.dir/__/sundials/sundials_sptfqmr.c.o /usr/bin/ranlib libsundials_cvode.a gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' [100%] Built target sundials_cvode_static gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/build/CMakeFiles 0 ++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include' + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser' + mkdir -p build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../muparser_v2_2_4/include' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DBUILD_SHARED_LIBS:BOOL=OFF -DBUILD_STATIC_LIBS:BOOL=ON -- The C compiler identification is GNU 13.0.0 -- The CXX compiler identification is GNU 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_SHARED_LIBS BUILD_STATIC_LIBS CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build + /usr/bin/cmake --build build -j2 --verbose /usr/bin/cmake -S/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -B/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' /usr/bin/gmake -f CMakeFiles/run_network.dir/build.make CMakeFiles/run_network.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' cd /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles/run_network.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' /usr/bin/gmake -f CMakeFiles/run_network.dir/build.make CMakeFiles/run_network.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' [ 1%] Building CXX object CMakeFiles/run_network.dir/src/network.cpp.o [ 3%] Building CXX object CMakeFiles/run_network.dir/src/network3.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/network3.cpp.o -MF CMakeFiles/run_network.dir/src/network3.cpp.o.d -o CMakeFiles/run_network.dir/src/network3.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.cpp /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/network.cpp.o -MF CMakeFiles/run_network.dir/src/network.cpp.o.d -o CMakeFiles/run_network.dir/src/network.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:54: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void read_functions_array(const char*, Elt_array*&, std::map, double*>&, std::map, int>, std::map, int>, double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:440:13: warning: variable 'index' set but not used [-Wunused-but-set-variable] 440 | int index; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1132 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1543 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1925 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:1927:15: warning: variable 'sarr' set but not used [-Wunused-but-set-variable] 1927 | Elt **sarr, **rarr; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int n_species_active()': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2068 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int get_conc_network(double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2088 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int set_conc_network(double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2110 | register int i, n_species; | ^~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int rxn_rates_network(double*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2729 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void derivs_network(double, double*, double*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2782:15: warning: unused variable 'rarray' [-Wunused-variable] 2782 | Rxn **rarray, *rxn; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2783:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 2783 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_derivs_network(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2957 | register int i/*,j*/; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_derivs_species_network(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2990 | register int i/*,j*/; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_rates_network(FILE*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3019 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void sparse_jac_matlab(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3198 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3204:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 3204 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3272 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3277:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 3277 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 3333 | register int i, j, r, n; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3338:15: warning: variable 'rates' set but not used [-Wunused-but-set-variable] 3338 | Elt** rates; | ^~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int print_flux_network(FILE*, double, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 4037 | register int i; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_rxn_update_list(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4376:29: warning: variable 'rxn' set but not used [-Wunused-but-set-variable] 4376 | Rxn /* **rarray,*/ *rxn; | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void print_as_reactant_list(FILE*)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4410:13: warning: variable 'offset' set but not used [-Wunused-but-set-variable] 4410 | int offset; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int create_update_lists()': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4757:37: warning: unused variable 'pp' [-Wunused-variable] 4757 | int pp = GSP.func_param_affect.at(ff)-1; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int init_gillespie_direct_network(int, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4837:15: warning: unused variable 'rarray' [-Wunused-variable] 4837 | Rxn** rarray; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int init_adaptive_scaling_network(int, int, double, bool)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4905:15: warning: unused variable 'rarray' [-Wunused-variable] 4905 | Rxn** rarray; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int update_gillespie_direct_network(int, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:13: warning: unused variable 'ip' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:17: warning: unused variable 'ir' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:21: warning: unused variable 'is' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4978:25: warning: unused variable 'irxn' [-Wunused-variable] 4978 | int ip, ir, is, irxn; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4980:14: warning: unused variable 'rxn_dep' [-Wunused-variable] 4980 | int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:17: warning: unused variable 'arl' [-Wunused-variable] 4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:23: warning: unused variable 'apl' [-Wunused-variable] 4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4983:29: warning: unused variable 'rul' [-Wunused-variable] 4983 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:13: warning: unused variable 'offset' [-Wunused-variable] 4984 | int offset, r_index, p_index; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:21: warning: unused variable 'r_index' [-Wunused-variable] 4984 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4984:30: warning: unused variable 'p_index' [-Wunused-variable] 4984 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4985:15: warning: unused variable 'rarray' [-Wunused-variable] 4985 | Rxn **rarray, *rxn; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4985:24: warning: unused variable 'rxn' [-Wunused-variable] 4985 | Rxn **rarray, *rxn; | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'int update_adaptive_scaling_network(int, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:13: warning: unused variable 'ip' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:17: warning: unused variable 'ir' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:21: warning: unused variable 'is' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5160:25: warning: unused variable 'irxn' [-Wunused-variable] 5160 | int ip, ir, is, irxn; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5162:14: warning: unused variable 'rxn_dep' [-Wunused-variable] 5162 | int *rxn_dep/*, *rxn_dep2, *rxn_dep3*/; /* boolean arrays to keep track of dependent | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:17: warning: unused variable 'arl' [-Wunused-variable] 5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:23: warning: unused variable 'apl' [-Wunused-variable] 5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5165:29: warning: unused variable 'rul' [-Wunused-variable] 5165 | iarray *arl, *apl, *rul; /* species and reaction update lists */ | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:13: warning: unused variable 'offset' [-Wunused-variable] 5166 | int offset, r_index, p_index; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:21: warning: unused variable 'r_index' [-Wunused-variable] 5166 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5166:30: warning: unused variable 'p_index' [-Wunused-variable] 5166 | int offset, r_index, p_index; | ^~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5167:15: warning: unused variable 'rarray' [-Wunused-variable] 5167 | Rxn **rarray, *rxn; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5167:24: warning: unused variable 'rxn' [-Wunused-variable] 5167 | Rxn **rarray, *rxn; | ^~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void update_rxn_rates(int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5683:27: warning: variable 'c' set but not used [-Wunused-but-set-variable] 5683 | double *a, anew, *c; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'void update_rxn_rates_has(int, double, bool)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:5747:27: warning: variable 'c' set but not used [-Wunused-but-set-variable] 5747 | double *a, anew, *c; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:262:23: warning: 'mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){ | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:258:23: warning: 'mu::value_type If(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){ | ^~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: At global scope: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3332:12: warning: 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)' defined but not used [-Wunused-function] 3332 | static int CVjtimes(N_Vector v, N_Vector Jv, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp) { | ^~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:3270:13: warning: 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)' defined but not used [-Wunused-function] 3270 | static void CVjac_network(long int N, DlsMat J, realtype t, N_Vector y, N_Vector fy, void* jac_data, N_Vector tmp1, N_Vector tmp2, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:38: ../src/util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ ../src/util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ ../src/util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'rxn_rate_scaled(RXN*, double*, int, double&, double, bool) [clone .constprop.0]': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2703:22: warning: 'rate' may be used uninitialized [-Wmaybe-uninitialized] 2703 | if (discrete && rate < 0.0){ | ~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2328:16: note: 'rate' was declared here 2328 | double rate; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'rxn_rate(RXN*, double*, int)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2303:22: warning: 'rate' may be used uninitialized [-Wmaybe-uninitialized] 2303 | if (discrete && rate < 0.0){ | ~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:2126:16: note: 'rate' was declared here 2126 | double rate; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp: In function 'create_update_lists()': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.cpp:4459:15: warning: 'rarray' may be used uninitialized [-Wmaybe-uninitialized] 4459 | Rxn **rarray, *rxn; | ^~~~~~ [ 5%] Building CXX object CMakeFiles/run_network.dir/src/run_network.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/run_network.cpp.o -MF CMakeFiles/run_network.dir/src/run_network.cpp.o.d -o CMakeFiles/run_network.dir/src/run_network.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:36, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network3.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:46: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp: In function 'int main(int, char**)': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i/*, j*/; | ^ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:735:84: warning: variable 'n_deriv_calls_last' set but not used [-Wunused-but-set-variable] 735 | long int /*n_steps = 0, n_steps_last = 0,*/ n_rate_calls_last = 0, n_deriv_calls_last = 0; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h: At global scope: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:262:23: warning: 'mu::value_type Mratio(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 262 | static mu::value_type Mratio(mu::value_type a, mu::value_type b, mu::value_type z){ | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/network.h:258:23: warning: 'mu::value_type If(mu::value_type, mu::value_type, mu::value_type)' defined but not used [-Wunused-function] 258 | static mu::value_type If(mu::value_type v1, mu::value_type v2, mu::value_type v3){ | ^~ In file included from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:39: ../src/util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] 364 | static double dswap; | ^~~~~ ../src/util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ ../src/util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] 359 | static int imarg1, imarg2; | ^~~~~~ ../src/util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] 356 | static double marg1, marg2; | ^~~~~ ../src/util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] 354 | static int isqrarg; | ^~~~~~~ ../src/util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] 352 | static double sqrarg; | ^~~~~~ [ 7%] Building CXX object CMakeFiles/run_network.dir/src/model/function.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/function.cpp.o -MF CMakeFiles/run_network.dir/src/model/function.cpp.o.d -o CMakeFiles/run_network.dir/src/model/function.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.cpp /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp: In function 'main': /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:588:20: warning: 'sample_time' may be used uninitialized [-Wmaybe-uninitialized] 588 | else t_end = t_start + (double)n_sample*sample_time; | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:106:12: note: 'sample_time' was declared here 106 | double sample_time, *sample_times = 0x0/*, *st, t1*/; | ^~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1014:47: warning: 'derivs' may be used uninitialized [-Wmaybe-uninitialized] 1014 | derivs_network(t, conc, derivs); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:32: note: 'derivs' was declared here 117 | double *conc, *conc_last, *derivs; | ^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1009:49: warning: 'conc' may be used uninitialized [-Wmaybe-uninitialized] 1009 | get_conc_network(conc); | ~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:13: note: 'conc' was declared here 117 | double *conc, *conc_last, *derivs; | ^~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:1010:45: warning: 'conc_last' may be used uninitialized [-Wmaybe-uninitialized] 1010 | delta = sqrt(VECTOR_DIST(conc, conc_last, n_species_network())) / n_species_network(); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/run_network.cpp:117:20: note: 'conc_last' was declared here 117 | double *conc, *conc_last, *derivs; | ^~~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/function.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 9%] Building CXX object CMakeFiles/run_network.dir/src/model/observable.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/observable.cpp.o -MF CMakeFiles/run_network.dir/src/model/observable.cpp.o.d -o CMakeFiles/run_network.dir/src/model/observable.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/observable.cpp [ 10%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpression.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode 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-I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateMuParser.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.cpp In file included from ../muparser_v2_2_4/include/../include/muParserStack.h:35, from ../muparser_v2_2_4/include/../include/muParserBase.h:39, from ../muparser_v2_2_4/include/../include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateMuParser.cpp:8: ../muparser_v2_2_4/include/../include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/../include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/../include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 30%] Building CXX object CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o -MF CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o.d -o CMakeFiles/run_network.dir/src/model/rateExpressions/rateSaturation.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions/rateSaturation.cpp [ 32%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/bioNetGenRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 34%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/elementaryRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/elementaryRxn.cpp [ 36%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/functionalRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/functionalRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/elementaryRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/functionalRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 38%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/hillRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/hillRxn.cpp [ 40%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla 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-I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/michaelisMentenRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/michaelisMentenRxn.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/hillRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/michaelisMentenRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 41%] Building CXX object CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o -MF CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o.d -o CMakeFiles/run_network.dir/src/model/reactions/saturationRxn.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/saturationRxn.cpp [ 43%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/firingGenerator.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/firingGenerator.cpp In file included from ../muparser_v2_2_4/include/muParserStack.h:35, from ../muparser_v2_2_4/include/muParserBase.h:39, from ../muparser_v2_2_4/include/muParser.h:32, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/../function.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/bioNetGenRxn.hh:12, from /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions/saturationRxn.cpp:8: ../muparser_v2_2_4/include/muParserToken.h:72:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 72 | std::auto_ptr m_pCallback; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from ../muparser_v2_2_4/include/muParserBase.h:33: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ ../muparser_v2_2_4/include/muParserBase.h:291:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 291 | std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/postleapChecker.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/postleapChecker.cpp [ 47%] Building CXX object CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o /usr/bin/g++ -DRUN_NETWORK_VERSION=\"3.0\" -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/cvode -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/nvector -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/include/sundials -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/ssa -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/rateExpressions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/model/reactions -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/fEuler -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/base -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/eRungeKutta/util -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/MTrand -I/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/util/rand2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I../src/util/mathutils -I../cvode-2.6.0/include -I../cvode-2.6.0/include/cvode -I../cvode-2.6.0/build/include -I../cvode-2.6.0/src/cvode/fcmix -L../src/util/mathutils -I../muparser_v2_2_4/include -L../muparser_v2_2_4/lib -L../cvode-2.6.0/build/src/cvode/fcmix -L../cvode-2.6.0/build/src/sundials -L../cvode-2.6.0/build/src/cvode -L../cvode-2.6.0/build/src/nvec_ser -MD -MT CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o -MF CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o.d -o CMakeFiles/run_network.dir/src/pla/base/rxnClassifier.cpp.o -c /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src/pla/base/rxnClassifier.cpp [ 49%] Building CXX object 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CMakeFiles/run_network.dir/src/pla/fEuler/fEulerSB_PL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEulerSB_TC_PL.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEuler_FG.cpp.o CMakeFiles/run_network.dir/src/pla/fEuler/fEuler_RC.cpp.o CMakeFiles/run_network.dir/src/pla/util/fixed_TC.cpp.o CMakeFiles/run_network.dir/src/pla/util/g_Getter.cpp.o CMakeFiles/run_network.dir/src/pla/util/negPopChecker.cpp.o CMakeFiles/run_network.dir/src/pla/util/preleap_TC.cpp.o CMakeFiles/run_network.dir/src/pla/util/rbChecker.cpp.o CMakeFiles/run_network.dir/src/pla/util/sbChecker.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/aEff_Calculator.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/binomialCorrector_RK.cpp.o CMakeFiles/run_network.dir/src/pla/eRungeKutta/util/butcherTableau.cpp.o CMakeFiles/run_network.dir/src/util/MTrand/mtrand.cpp.o CMakeFiles/run_network.dir/src/util/rand2/rand2.cpp.o -o run_network -L/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/lib -Wl,-Bstatic -lmathutils -lmuparser -lsundials_cvode -lsundials_fcvode -lsundials_nvecserial -Wl,-Bdynamic gmake[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' [100%] Built target run_network gmake[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build/CMakeFiles 0 + popd ~/build/BUILD/bionetgen-2.8.4 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0yojhz + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x ++ dirname /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.8.4 + pushd bionetgen-BioNetGen-2.8.4/bng2/Network3/build ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/build ~/build/BUILD/bionetgen-2.8.4 + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/bin mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/bin' + install -pm 755 run_network /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/bin/ + popd ~/build/BUILD/bionetgen-2.8.4 + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen' + cp -r bionetgen-BioNetGen-2.8.4/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen/ + cp -r bionetgen-BioNetGen-2.8.4/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen/ + cp -a bionetgen-BioNetGen-2.8.4/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen/ + rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_s390x-linux + rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.8.4-3.fc38 --unique-debug-suffix -2.8.4-3.fc38.s390x --unique-debug-src-base bionetgen-2.8.4-3.fc38.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.8.4 extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/bin/run_network original debug info size: 9060kB, size after compression: 6992kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 2296 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.TIfGTR + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bionetgen-2.8.4 + pushd bionetgen-BioNetGen-2.8.4/bng2/Models2 ~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Models2 ~/build/BUILD/bionetgen-2.8.4 + install -pm 755 ../Network3/build/run_network -D ./bin/run_network_s390x-linux + install -pm 755 ../Network3/build/run_network -D ../bin/run_network_s390x-linux + echo 'Running some tests ...' Running some tests ... + ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl BioNetGen version 2.8.4 Reading from file CaOscillate_Func.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Func ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Wrote network in net format to ./CaOscillate_Func.net. CPU TIME: generate_network 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net. Wrote network in net format to ./CaOscillate_Func.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200 [simulation PID is: 3066] run_network 3.0 Read 17 parameters from ./CaOscillate_Func.net Read 4 species from ./CaOscillate_Func.net Read 4 group(s) from ./CaOscillate_Func.net Read 4 function(s) from ./CaOscillate_Func.net Read 8 reaction(s) from ./CaOscillate_Func.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 719 851 0.20 753 889 0.30 788 924 0.40 822 962 0.50 857 997 0.60 891 1035 0.70 926 1070 0.80 960 1108 0.90 995 1147 1.00 1029 1181 1.10 1064 1221 1.20 1098 1257 1.30 1133 1299 1.40 1167 1335 1.50 1215 1393 1.60 1263 1449 1.70 1324 1520 1.80 1389 1596 1.90 1460 1680 2.00 1544 1781 2.10 1620 1865 2.20 1697 1946 2.30 1749 2005 2.40 1800 2063 2.50 1854 2128 2.60 1993 2299 2.70 2464 2852 2.80 2562 2973 2.90 2607 3025 3.00 2657 3086 3.10 2718 3156 3.20 2779 3224 3.30 2839 3290 3.40 2900 3355 3.50 2961 3420 3.60 3018 3482 3.70 3071 3550 3.80 3200 3708 3.90 3345 3881 4.00 3456 4003 4.10 3521 4073 4.20 3572 4129 4.30 3624 4186 4.40 3671 4234 4.50 3707 4279 4.60 3753 4333 4.70 3799 4383 4.80 3856 4451 4.90 3913 4526 5.00 3969 4585 5.10 4010 4632 5.20 4047 4675 5.30 4080 4709 5.40 4105 4739 5.50 4129 4764 5.60 4154 4797 5.70 4178 4823 5.80 4201 4848 5.90 4221 4871 6.00 4241 4897 6.10 4261 4918 6.20 4281 4943 6.30 4294 4956 6.40 4307 4970 6.50 4321 4984 6.60 4334 4997 6.70 4347 5014 6.80 4356 5024 6.90 4365 5033 7.00 4374 5042 7.10 4383 5052 7.20 4392 5062 7.30 4401 5071 7.40 4410 5086 7.50 4419 5095 7.60 4427 5103 7.70 4436 5113 7.80 4445 5123 7.90 4457 5142 8.00 4469 5165 8.10 4481 5179 8.20 4491 5192 8.30 4504 5211 8.40 4522 5240 8.50 4543 5268 8.60 4568 5298 8.70 4607 5350 8.80 4663 5420 8.90 4772 5555 9.00 5104 5945 9.10 5399 6270 9.20 5507 6389 9.30 5546 6435 9.40 5561 6451 9.50 5573 6463 9.60 5585 6475 9.70 5597 6492 9.80 5608 6503 9.90 5620 6516 10.00 5632 6528 10.10 5644 6541 10.20 5656 6558 10.30 5668 6570 10.40 5680 6584 10.50 5692 6596 10.60 5703 6609 10.70 5715 6626 10.80 5727 6639 10.90 5739 6653 11.00 5751 6665 11.10 5767 6683 11.20 5783 6704 11.30 5799 6721 11.40 5815 6738 11.50 5831 6754 11.60 5847 6776 11.70 5863 6794 11.80 5879 6812 11.90 5895 6834 12.00 5911 6850 12.10 5927 6868 12.20 5943 6886 12.30 5959 6908 12.40 5975 6926 12.50 5991 6942 12.60 6012 6967 12.70 6034 6994 12.80 6056 7020 12.90 6078 7048 13.00 6100 7072 13.10 6128 7108 13.20 6158 7140 13.30 6188 7177 13.40 6223 7216 13.50 6263 7264 13.60 6311 7322 13.70 6366 7387 13.80 6435 7464 13.90 6507 7550 14.00 6594 7646 14.10 6673 7738 14.20 6750 7820 14.30 6803 7880 14.40 6856 7939 14.50 6911 8005 14.60 7038 8162 14.70 7513 8728 14.80 7634 8876 14.90 7681 8925 15.00 7731 8985 15.10 7793 9054 15.20 7848 9121 15.30 7904 9185 15.40 7960 9246 15.50 8016 9306 15.60 8072 9366 15.70 8129 9434 15.80 8253 9587 15.90 8393 9752 16.00 8510 9880 16.10 8578 9953 16.20 8634 10013 16.30 8690 10073 16.40 8738 10126 16.50 8776 10172 16.60 8820 10221 16.70 8870 10277 16.80 8928 10346 16.90 8988 10415 17.00 9046 10480 17.10 9088 10524 17.20 9126 10568 17.30 9160 10607 17.40 9185 10632 17.50 9211 10659 17.60 9236 10692 17.70 9261 10718 17.80 9284 10747 17.90 9304 10769 18.00 9325 10791 18.10 9346 10817 18.20 9365 10837 18.30 9376 10850 18.40 9385 10859 18.50 9394 10874 18.60 9404 10884 18.70 9413 10894 18.80 9422 10903 18.90 9431 10912 19.00 9440 10921 19.10 9449 10930 19.20 9459 10945 19.30 9468 10954 19.40 9477 10964 19.50 9486 10973 19.60 9495 10984 19.70 9505 10994 19.80 9514 11012 19.90 9523 11021 20.00 9532 11031 Time course of concentrations written to file ./CaOscillate_Func.cdat. Time course of groups written to file ./CaOscillate_Func.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Func.cdat CPU TIME: simulate 0.01 s. Finished processing file CaOscillate_Func.bngl. CPU TIME: total 0.03 s. BioNetGen version 2.8.4 Reading from file CaOscillate_Sat.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Sat ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Sat.net. CPU TIME: generate_network 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net. Wrote network in net format to ./CaOscillate_Sat.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200 [simulation PID is: 3068] run_network 3.0 Read 17 parameters from ./CaOscillate_Sat.net Read 4 species from ./CaOscillate_Sat.net Read 4 group(s) from ./CaOscillate_Sat.net Read 0 function(s) from ./CaOscillate_Sat.net Read 8 reaction(s) from ./CaOscillate_Sat.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 717 850 0.20 741 879 0.30 765 904 0.40 790 930 0.50 814 960 0.60 838 985 0.70 863 1015 0.80 887 1040 0.90 911 1066 1.00 936 1099 1.10 961 1129 1.20 993 1171 1.30 1025 1207 1.40 1064 1257 1.50 1108 1309 1.60 1155 1366 1.70 1210 1431 1.80 1284 1514 1.90 1358 1601 2.00 1442 1703 2.10 1521 1789 2.20 1596 1869 2.30 1649 1928 2.40 1701 1987 2.50 1757 2053 2.60 1896 2222 2.70 2360 2768 2.80 2463 2900 2.90 2511 2957 3.00 2560 3015 3.10 2618 3082 3.20 2677 3148 3.30 2735 3213 3.40 2793 3275 3.50 2852 3338 3.60 2910 3400 3.70 2969 3470 3.80 3099 3626 3.90 3243 3798 4.00 3343 3906 4.10 3413 3985 4.20 3479 4055 4.30 3546 4126 4.40 3590 4175 4.50 3634 4222 4.60 3679 4275 4.70 3723 4327 4.80 3778 4394 4.90 3835 4465 5.00 3890 4527 5.10 3930 4571 5.20 3966 4613 5.30 3999 4651 5.40 4023 4676 5.50 4047 4702 5.60 4071 4732 5.70 4095 4759 5.80 4117 4787 5.90 4138 4811 6.00 4158 4833 6.10 4178 4854 6.20 4198 4879 6.30 4211 4892 6.40 4225 4907 6.50 4238 4924 6.60 4252 4938 6.70 4265 4951 6.80 4274 4961 6.90 4283 4970 7.00 4292 4979 7.10 4301 4989 7.20 4310 5003 7.30 4319 5012 7.40 4328 5022 7.50 4337 5031 7.60 4345 5040 7.70 4354 5050 7.80 4363 5064 7.90 4372 5079 8.00 4381 5088 8.10 4390 5099 8.20 4400 5115 8.30 4412 5134 8.40 4431 5179 8.50 4456 5205 8.60 4483 5240 8.70 4519 5286 8.80 4575 5356 8.90 4682 5482 9.00 5014 5875 9.10 5309 6200 9.20 5417 6315 9.30 5456 6361 9.40 5471 6377 9.50 5482 6388 9.60 5493 6404 9.70 5505 6417 9.80 5516 6428 9.90 5527 6440 10.00 5539 6452 10.10 5550 6468 10.20 5561 6479 10.30 5573 6493 10.40 5584 6504 10.50 5595 6517 10.60 5607 6535 10.70 5618 6546 10.80 5630 6560 10.90 5643 6575 11.00 5658 6595 11.10 5673 6610 11.20 5689 6627 11.30 5704 6644 11.40 5719 6665 11.50 5735 6681 11.60 5750 6698 11.70 5765 6715 11.80 5781 6737 11.90 5796 6753 12.00 5811 6769 12.10 5827 6787 12.20 5842 6808 12.30 5857 6825 12.40 5873 6841 12.50 5892 6863 12.60 5913 6889 12.70 5934 6912 12.80 5955 6935 12.90 5975 6961 13.00 6001 6992 13.10 6029 7028 13.20 6057 7058 13.30 6095 7112 13.40 6133 7157 13.50 6171 7203 13.60 6220 7263 13.70 6275 7328 13.80 6345 7407 13.90 6415 7492 14.00 6497 7592 14.10 6572 7678 14.20 6647 7757 14.30 6703 7819 14.40 6753 7876 14.50 6805 7938 14.60 6932 8095 14.70 7381 8618 14.80 7498 8747 14.90 7552 8807 15.00 7599 8867 15.10 7663 8938 15.20 7718 9002 15.30 7774 9065 15.40 7831 9127 15.50 7887 9187 15.60 7944 9244 15.70 8001 9317 15.80 8126 9469 15.90 8281 9649 16.00 8392 9771 16.10 8457 9841 16.20 8507 9898 16.30 8557 9954 16.40 8604 10006 16.50 8640 10047 16.60 8685 10100 16.70 8730 10154 16.80 8785 10215 16.90 8841 10289 17.00 8895 10347 17.10 8935 10395 17.20 8971 10437 17.30 9004 10471 17.40 9028 10499 17.50 9051 10525 17.60 9075 10551 17.70 9098 10580 17.80 9120 10605 17.90 9140 10629 18.00 9160 10655 18.10 9181 10677 18.20 9200 10701 18.30 9210 10716 18.40 9221 10728 18.50 9232 10740 18.60 9243 10751 18.70 9254 10762 18.80 9265 10773 18.90 9276 10788 19.00 9287 10799 19.10 9298 10810 19.20 9309 10821 19.30 9320 10832 19.40 9331 10847 19.50 9342 10858 19.60 9353 10869 19.70 9364 10880 19.80 9375 10891 19.90 9386 10903 20.00 9397 10919 Time course of concentrations written to file ./CaOscillate_Sat.cdat. Time course of groups written to file ./CaOscillate_Sat.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Sat.cdat CPU TIME: simulate 0.01 s. Finished processing file CaOscillate_Sat.bngl. CPU TIME: total 0.02 s. BioNetGen version 2.8.4 Reading from file catalysis.bngl (level 0) CPU TIME: version 0.00 s. Warning: Parameter Gf_S_kinase is set to a negative value: -41.5 Warning: Parameter Gf_S_pptase is set to a negative value: -41.5 Warning: Parameter Ea0_S_kinase is set to a negative value: -7.7 Warning: Parameter Ea0_S_pptase is set to a negative value: -7.7 Warning: Parameter Ea0_cat_kinase is set to a negative value: -11.9 Read 17 parameters. Read 1 compartments. Read 5 molecule types. Read 5 species. Read 4 reaction rule(s). Read 4 energy patterns(s). Read 6 observable(s). ACTION: generate_network( catalysis ) Iteration 0: 5 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 2 rxns 1.00e-02 CPU s Iteration 2: 9 species 6 rxns 0.00e+00 CPU s Iteration 3: 10 species 10 rxns 0.00e+00 CPU s Iteration 4: 10 species 12 rxns 0.00e+00 CPU s Cumulative CPU time for each rule Rule 1: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 12 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./catalysis.net. CPU TIME: generate_network 0.02 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./catalysis.net. Wrote network in net format to ./catalysis.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120 [simulation PID is: 3070] run_network 3.0 Read 30 parameters from ./catalysis.net @C::$ATP() is a fixed (boundaryCondition) variable @C::$ADP() is a fixed (boundaryCondition) variable Read 10 species from ./catalysis.net Read 6 group(s) from ./catalysis.net Read 0 function(s) from ./catalysis.net Read 12 reaction(s) from ./catalysis.net 12 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./catalysis.cdat. Time course of groups written to file ./catalysis.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./catalysis.cdat CPU TIME: simulate 0.00 s. Finished processing file catalysis.bngl. CPU TIME: total 0.03 s. BioNetGen version 2.8.4 Reading from file egfr_net.bngl (level 0) Read 48 parameters. Read 5 molecule types. Read 6 species. Read 23 reaction rule(s). Read 15 observable(s). ACTION: generate_network( egfr_net ) Iteration 0: 6 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 1.00e-02 CPU s Iteration 2: 8 species 5 rxns 0.00e+00 CPU s Iteration 3: 10 species 8 rxns 1.00e-02 CPU s Iteration 4: 19 species 21 rxns 1.00e-02 CPU s Iteration 5: 37 species 76 rxns 7.00e-02 CPU s Iteration 6: 69 species 213 rxns 1.60e-01 CPU s Iteration 7: 131 species 494 rxns 3.70e-01 CPU s Iteration 8: 295 species 1260 rxns 1.16e+00 CPU s Iteration 9: 356 species 3088 rxns 3.07e+00 CPU s Iteration 10: 356 species 3749 rxns 1.41e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 4.00e-02 CPU s 8.33e-04 CPU s/rxn Rule 2: 600 reactions 1.53e+00 CPU s 2.55e-03 CPU s/rxn Rule 3: 144 reactions 1.70e-01 CPU s 1.18e-03 CPU s/rxn Rule 4: 96 reactions 1.20e-01 CPU s 1.25e-03 CPU s/rxn Rule 5: 156 reactions 1.90e-01 CPU s 1.22e-03 CPU s/rxn Rule 6: 104 reactions 9.00e-02 CPU s 8.65e-04 CPU s/rxn Rule 7: 96 reactions 1.50e-01 CPU s 1.56e-03 CPU s/rxn Rule 8: 104 reactions 1.10e-01 CPU s 1.06e-03 CPU s/rxn Rule 9: 312 reactions 4.30e-01 CPU s 1.38e-03 CPU s/rxn Rule 10: 312 reactions 4.40e-01 CPU s 1.41e-03 CPU s/rxn Rule 11: 312 reactions 4.60e-01 CPU s 1.47e-03 CPU s/rxn Rule 12: 208 reactions 2.90e-01 CPU s 1.39e-03 CPU s/rxn Rule 13: 208 reactions 2.80e-01 CPU s 1.35e-03 CPU s/rxn Rule 14: 208 reactions 3.60e-01 CPU s 1.73e-03 CPU s/rxn Rule 15: 208 reactions 4.00e-01 CPU s 1.92e-03 CPU s/rxn Rule 16: 208 reactions 3.40e-01 CPU s 1.63e-03 CPU s/rxn Rule 17: 208 reactions 3.60e-01 CPU s 1.73e-03 CPU s/rxn Rule 18: 208 reactions 3.60e-01 CPU s 1.73e-03 CPU s/rxn Rule 19: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 20: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 21: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 22: 2 reactions 6.00e-02 CPU s 3.00e-02 CPU s/rxn Rule 23: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 3749 reactions 6.24e+00 CPU s 1.66e-03 CPU s/rxn Wrote network in net format to ./egfr_net.net. CPU TIME: generate_network 6.38 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net.net. Wrote network in net format to ./egfr_net.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50 [simulation PID is: 3072] run_network 3.0 Read 48 parameters from ./egfr_net.net Read 356 species from ./egfr_net.net Read 15 group(s) from ./egfr_net.net Read 0 function(s) from ./egfr_net.net Read 3749 reaction(s) from ./egfr_net.net 3749 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net.cdat. Time course of groups written to file ./egfr_net.gdat. Propagation took 9.00e-02 CPU seconds Program times: 0.10 CPU s 0.00 clock s Updating species concentrations from ./egfr_net.cdat CPU TIME: simulate 0.22 s. Finished processing file egfr_net.bngl. CPU TIME: total 6.64 s. BioNetGen version 2.8.4 Reading from file egfr_net_red.bngl (level 0) Read 48 parameters. Read 7 molecule types. Read 7 species. Read 14 observable(s). Read 26 reaction rule(s). ACTION: generate_network( egfr_net_red ) Iteration 0: 7 species 0 rxns 0.00e+00 CPU s Iteration 1: 11 species 4 rxns 1.00e-02 CPU s Iteration 2: 13 species 10 rxns 1.00e-02 CPU s Iteration 3: 15 species 14 rxns 1.00e-02 CPU s Iteration 4: 20 species 21 rxns 2.00e-02 CPU s Iteration 5: 26 species 39 rxns 1.00e-02 CPU s Iteration 6: 33 species 62 rxns 3.00e-02 CPU s Iteration 7: 38 species 90 rxns 2.00e-02 CPU s Iteration 8: 40 species 115 rxns 3.00e-02 CPU s Iteration 9: 40 species 123 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 12 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 12 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 11: 3 reactions 1.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 12: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 13: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 15: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 16: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 17: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 18: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 20: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 21: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 22: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 23: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 24: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 25: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 26: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 123 reactions 8.00e-02 CPU s 6.50e-04 CPU s/rxn Wrote network in net format to ./egfr_net_red.net. CPU TIME: generate_network 0.15 s. Set concentration of species egf(r) to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10 [simulation PID is: 3074] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.02 s. Set concentration of species egf(r) to value egf_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120 [simulation PID is: 3076] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.01 s. Finished processing file egfr_net_red.bngl. CPU TIME: total 0.23 s. BioNetGen version 2.8.4 Reading from file egfr_path.bngl (level 0) Read 48 parameters. Read 18 species. Read 19 reaction rule(s). Read 11 observable(s). ACTION: generate_network( egfr_path ) Iteration 0: 18 species 0 rxns 0.00e+00 CPU s Iteration 1: 18 species 37 rxns 2.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 6: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 11: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 15: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 16: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 18: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 37 reactions 2.00e-02 CPU s 5.41e-04 CPU s/rxn Wrote network in net format to ./egfr_path.net. CPU TIME: generate_network 0.03 s. Set concentration of species EGF() to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10 [simulation PID is: 3078] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.00 s. Set concentration of species EGF() to value EGF_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120 [simulation PID is: 3080] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.02 s. Finished processing file egfr_path.bngl. CPU TIME: total 0.08 s. BioNetGen version 2.8.4 Reading from file energy_example1.bngl (level 0) CPU TIME: version 0.00 s. Warning: Parameter Gf_SA is set to a negative value: -47.5 Warning: Parameter Gf_SB is set to a negative value: -47.5 Warning: Parameter Gf_SC is set to a negative value: -47.5 Warning: Parameter Gf_SBC is set to a negative value: -5.9 Warning: Parameter Gf_SABC is set to a negative value: -1.8 Warning: Parameter Ea0_SA is set to a negative value: -17.8 Warning: Parameter Ea0_SB is set to a negative value: -17.8 Warning: Parameter Ea0_SC is set to a negative value: -17.8 Read 19 parameters. Read 1 compartments. Read 4 molecule types. Read 4 species. Read 6 energy patterns(s). Read 11 observable(s). Read 3 reaction rule(s). ACTION: generate_network( energy_example1 ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 0.00e+00 CPU s Iteration 2: 10 species 12 rxns 1.00e-02 CPU s Iteration 3: 11 species 21 rxns 1.00e-02 CPU s Iteration 4: 11 species 24 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Total : 24 reactions 2.00e-02 CPU s 8.33e-04 CPU s/rxn Wrote network in net format to ./energy_example1.net. CPU TIME: generate_network 0.03 s. Wrote SBML to ./energy_example1_sbml.xml. CPU TIME: writeSBML 0.01 s. Finished processing file energy_example1.bngl. CPU TIME: total 0.05 s. BioNetGen version 2.8.4 Reading from file fceri_ji.bngl (level 0) Read 26 parameters. Read 4 species. Adding pY as allowed state of component b of molecule Rec Adding pY as allowed state of component g of molecule Rec Adding pY as allowed state of component l of molecule Syk Adding pY as allowed state of component a of molecule Syk Read 19 reaction rule(s). Read 10 observable(s). ACTION: generate_network( fceri_ji ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 0.00e+00 CPU s Iteration 2: 9 species 8 rxns 1.00e-02 CPU s Iteration 3: 12 species 20 rxns 1.00e-02 CPU s Iteration 4: 22 species 36 rxns 2.00e-02 CPU s Iteration 5: 43 species 100 rxns 5.00e-02 CPU s Iteration 6: 78 species 255 rxns 1.50e-01 CPU s Iteration 7: 139 species 586 rxns 3.10e-01 CPU s Iteration 8: 199 species 1190 rxns 6.30e-01 CPU s Iteration 9: 303 species 1841 rxns 7.80e-01 CPU s Iteration 10: 354 species 3143 rxns 1.35e+00 CPU s Iteration 11: 354 species 3680 rxns 5.80e-01 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 6.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 2: 1152 reactions 1.06e+00 CPU s 9.20e-04 CPU s/rxn Rule 3: 312 reactions 3.10e-01 CPU s 9.94e-04 CPU s/rxn Rule 4: 36 reactions 7.00e-02 CPU s 1.94e-03 CPU s/rxn Rule 5: 24 reactions 6.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 6: 312 reactions 3.20e-01 CPU s 1.03e-03 CPU s/rxn Rule 7: 36 reactions 7.00e-02 CPU s 1.94e-03 CPU s/rxn Rule 8: 24 reactions 6.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 9: 832 reactions 8.20e-01 CPU s 9.86e-04 CPU s/rxn Rule 10: 48 reactions 1.00e-01 CPU s 2.08e-03 CPU s/rxn Rule 11: 48 reactions 6.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 12: 64 reactions 1.40e-01 CPU s 2.19e-03 CPU s/rxn Rule 13: 64 reactions 1.20e-01 CPU s 1.88e-03 CPU s/rxn Rule 14: 156 reactions 1.30e-01 CPU s 8.33e-04 CPU s/rxn Rule 15: 104 reactions 8.00e-02 CPU s 7.69e-04 CPU s/rxn Rule 16: 208 reactions 1.80e-01 CPU s 8.65e-04 CPU s/rxn Rule 17: 208 reactions 2.00e-01 CPU s 9.62e-04 CPU s/rxn Rule 18: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 3680 reactions 3.85e+00 CPU s 1.05e-03 CPU s/rxn Wrote network in net format to ./fceri_ji.net. CPU TIME: generate_network 3.98 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./fceri_ji.net. Wrote network in net format to ./fceri_ji.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10 [simulation PID is: 3082] run_network 3.0 Read 26 parameters from ./fceri_ji.net Read 354 species from ./fceri_ji.net Read 10 group(s) from ./fceri_ji.net Read 0 function(s) from ./fceri_ji.net Read 3680 reaction(s) from ./fceri_ji.net Removed 600 reactions with zero rate 3080 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./fceri_ji.cdat. Time course of groups written to file ./fceri_ji.gdat. Propagation took 6.30e-01 CPU seconds Program times: 0.64 CPU s 1.00 clock s Updating species concentrations from ./fceri_ji.cdat CPU TIME: simulate 0.75 s. Finished processing file fceri_ji.bngl. CPU TIME: total 4.76 s. BioNetGen version 2.8.4 Reading from file test_continue.bngl (level 0) Read 19 parameters. Read 5 molecule types. Read 4 species. Read 6 observable(s). Read 6 reaction rule(s). ACTION: generate_network( test_continue ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 0.00e+00 CPU s Iteration 2: 7 species 5 rxns 0.00e+00 CPU s Iteration 3: 8 species 7 rxns 1.00e-02 CPU s Iteration 4: 12 species 12 rxns 0.00e+00 CPU s Iteration 5: 17 species 30 rxns 2.00e-02 CPU s Iteration 6: 22 species 59 rxns 3.00e-02 CPU s Iteration 7: 22 species 76 rxns 2.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 20 reactions 4.00e-02 CPU s 2.00e-03 CPU s/rxn Rule 3: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 24 reactions 1.00e-02 CPU s 4.17e-04 CPU s/rxn Rule 6: 14 reactions 1.00e-02 CPU s 7.14e-04 CPU s/rxn Total : 76 reactions 6.00e-02 CPU s 7.89e-04 CPU s/rxn Wrote network in net format to ./test_continue.net. CPU TIME: generate_network 0.08 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 3084] run_network 3.0 Read 19 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.03 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 3086] run_network 3.0 Read 20 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.00 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 3088] run_network 3.0 Read 21 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.03 s. Reset species concentrations to "DEFAULT" saved values. CPU TIME: resetConcentrations 0.00 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./test_continue_ssa -p ssa -h 1322256022 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 3090] run_network 3.0 Read 21 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 71762 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.01 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./test_continue_ssa -p ssa -h 1796307851 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 3092] run_network 3.0 Read 22 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 130458 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.03 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_s390x-linux -o ./test_continue_ssa -p ssa -h 1091829997 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 3094] run_network 3.0 Read 23 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 106504 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 2.00e-02 CPU seconds Program times: 0.02 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.04 s. Finished processing file test_continue.bngl. CPU TIME: total 0.25 s. + echo 'Tests finished.' Tests finished. + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bionetgen-2.8.4-3.fc38.s390x Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.vQjtBm + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.8.4 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/README.md /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/doc/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.IZnKdx + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.8.4 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/licenses/bionetgen + cp -pr bionetgen-BioNetGen-2.8.4/LICENSE /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x/usr/share/licenses/bionetgen + RPM_EC=0 ++ jobs -p + exit 0 Provides: bionetgen = 2.8.4-3.fc38 bionetgen(s390-64) = 2.8.4-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.8.4-3.fc38.noarch Provides: bionetgen-perl = 2.8.4-3.fc38 bundled(XML-TreePP) = 0.41 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.8.4-3.fc38.s390x Provides: bionetgen-debugsource = 2.8.4-3.fc38 bionetgen-debugsource(s390-64) = 2.8.4-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.8.4-3.fc38.s390x Provides: bionetgen-debuginfo = 2.8.4-3.fc38 bionetgen-debuginfo(s390-64) = 2.8.4-3.fc38 debuginfo(build-id) = 9e8cf061d39722628ead56da875f9936853d4da0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(s390-64) = 2.8.4-3.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x Wrote: /builddir/build/RPMS/bionetgen-perl-2.8.4-3.fc38.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.8.4-3.fc38.s390x.rpm Wrote: /builddir/build/RPMS/bionetgen-2.8.4-3.fc38.s390x.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.8.4-3.fc38.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.1XOpN5 + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.8.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-3.fc38.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xXrg9N + umask 022 + cd /builddir/build/BUILD + rm -rf bionetgen-2.8.4 bionetgen-2.8.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bionetgen-2.8.4-3.fc38.src.rpm Finish: build phase for bionetgen-2.8.4-3.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1671793015.894390/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-3.fc38.src.rpm) Config(child) 1 minutes 37 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool