Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c10c' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6065810-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 4977 Logging PID: 4978 Task: {'appstream': False, 'background': False, 'bootstrap': 'off', 'build_id': 6065810, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '297b740224b3da7d7f999c11652b0371541bfe9d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/bwa', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bwa', 'package_version': '0.7.17-9.fc39', 'project_dirname': 'staging', 'project_name': 'staging', 'project_owner': 'jaruga', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jaruga/staging/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'jaruga/staging--jaruga', 'source_json': {}, 'source_type': None, 'submitter': 'jaruga', 'tags': [], 'task_id': '6065810-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/bwa /var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jaruga/staging/bwa', '/var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa'... Running: git checkout 297b740224b3da7d7f999c11652b0371541bfe9d -- cmd: ['git', 'checkout', '297b740224b3da7d7f999c11652b0371541bfe9d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa rc: 0 stdout: stderr: Note: switching to '297b740224b3da7d7f999c11652b0371541bfe9d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 297b740 automatic import of bwa Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bwa-0.7.17.tar.bz2 INFO: Calling: curl -H Pragma: -o bwa-0.7.17.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jaruga/staging/bwa/bwa-0.7.17.tar.bz2/md5/82cba7ef695538e6a38b9d4156837381/bwa-0.7.17.tar.bz2 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 186k 100 186k 0 0 2319k 0 --:--:-- --:--:-- --:--:-- 2330k INFO: Reading stdout from command: md5sum bwa-0.7.17.tar.bz2 Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa/bwa.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1686591773.353315 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa/bwa.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 201 kB/s | 24 kB 00:00 fedora 26 MB/s | 71 MB 00:02 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M cpio x86_64 2.14-2.fc39 fedora 279 k diffutils x86_64 3.9-4.fc39 fedora 397 k fedora-release-common noarch 39-0.14 fedora 17 k findutils x86_64 1:4.9.0-4.fc39 fedora 491 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.37.9000-13.fc39 fedora 59 k grep x86_64 3.11-1.fc39 fedora 298 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.3-2.fc39 fedora 182 k patch x86_64 2.7.6-21.fc39 fedora 126 k redhat-rpm-config noarch 254-1.fc39 fedora 83 k rpm-build x86_64 4.18.91-1.fc39 fedora 77 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M tar x86_64 2:1.34-8.fc39 fedora 888 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.39-4.fc39 fedora 1.2 M which x86_64 2.21-39.fc39 fedora 42 k xz x86_64 5.4.3-1.fc39 fedora 555 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-10.fc39 fedora 21 k audit-libs x86_64 3.1.1-1.fc39 fedora 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-17.fc39 fedora 7.0 k binutils x86_64 2.40-9.fc39 fedora 5.6 M binutils-gold x86_64 2.40-9.fc39 fedora 797 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M cracklib x86_64 2.9.7-31.fc38 fedora 92 k crypto-policies noarch 20230420-1.git3d08ae7.fc39 fedora 94 k curl x86_64 8.1.2-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k debugedit x86_64 5.0-7.fc38 fedora 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-8.fc39 fedora 22 k elfutils x86_64 0.189-2.fc39 fedora 536 k elfutils-debuginfod-client x86_64 0.189-2.fc39 fedora 39 k elfutils-default-yama-scope noarch 0.189-2.fc39 fedora 15 k elfutils-libelf x86_64 0.189-2.fc39 fedora 196 k elfutils-libs x86_64 0.189-2.fc39 fedora 260 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.14 fedora 6.6 k fedora-release-identity-basic noarch 39-0.14 fedora 7.4 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file x86_64 5.44-3.fc39 fedora 50 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.1-5.fc39 fedora 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37.9000-13.fc39 fedora 2.2 M glibc-common x86_64 2.37.9000-13.fc39 fedora 339 k glibc-gconv-extra x86_64 2.37.9000-13.fc39 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-3.fc39 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-18.fc39 fedora 9.4 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-9.fc39 fedora 727 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libblkid x86_64 2.39-4.fc39 fedora 116 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcurl x86_64 8.1.2-1.fc39 fedora 323 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.39-4.fc39 fedora 162 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.1.1-2.fc39 fedora 106 k libgomp x86_64 13.1.1-2.fc39 fedora 316 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.39-4.fc39 fedora 155 k libnghttp2 x86_64 1.54.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.9.4-2.fc39 fedora 38 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39-4.fc39 fedora 67 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-2.fc39 fedora 860 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-9.fc39 fedora 26 k libuuid x86_64 2.39-4.fc39 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.35-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-1.fc39 fedora 700 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-4.20230520.fc39 fedora 86 k ncurses-libs x86_64 6.4-4.20230520.fc39 fedora 336 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-2.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-8.fc39 fedora 11 k pam x86_64 1.5.3-1.fc39 fedora 547 k pam-libs x86_64 1.5.3-1.fc39 fedora 57 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.9.4-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.4-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.4-2.fc39 fedora 9.5 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230318-1.fc39 fedora 60 k pyproject-srpm-macros noarch 1.9.0-1.fc39 fedora 15 k python-srpm-macros noarch 3.11-10.fc39 fedora 26 k qt5-srpm-macros noarch 5.15.9-1.fc39 fedora 8.1 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-1.fc39 fedora 528 k rpm-build-libs x86_64 4.18.91-1.fc39 fedora 95 k rpm-libs x86_64 4.18.91-1.fc39 fedora 308 k rpm-sequoia x86_64 1.4.0-3.fc39 fedora 848 k rpmautospec-rpm-macros noarch 0.3.5-2.fc39 fedora 8.9 k rust-srpm-macros noarch 24-2.fc39 fedora 12 k setup noarch 2.14.3-3.fc39 fedora 152 k sqlite-libs x86_64 3.41.2-2.fc39 fedora 669 k systemd-libs x86_64 253.5-1.fc39 fedora 653 k tzdata noarch 2023c-1.fc39 fedora 718 k util-linux-core x86_64 2.39-4.fc39 fedora 492 k xxhash-libs x86_64 0.8.1-4.fc38 fedora 40 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total download size: 53 M Installed size: 179 M Downloading Packages: (1/152): alternatives-1.24-1.fc39.x86_64.rpm 178 kB/s | 39 kB 00:00 (2/152): ansible-srpm-macros-1-10.fc39.noarch.r 93 kB/s | 21 kB 00:00 (3/152): audit-libs-3.1.1-1.fc39.x86_64.rpm 374 kB/s | 117 kB 00:00 (4/152): basesystem-11-17.fc39.noarch.rpm 145 kB/s | 7.0 kB 00:00 (5/152): authselect-1.4.2-2.fc38.x86_64.rpm 954 kB/s | 144 kB 00:00 (6/152): authselect-libs-1.4.2-2.fc38.x86_64.rp 1.2 MB/s | 249 kB 00:00 (7/152): binutils-gold-2.40-9.fc39.x86_64.rpm 4.3 MB/s | 797 kB 00:00 (8/152): bzip2-1.0.8-13.fc38.x86_64.rpm 736 kB/s | 52 kB 00:00 (9/152): bash-5.2.15-3.fc38.x86_64.rpm 5.5 MB/s | 1.8 MB 00:00 (10/152): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 730 kB/s | 41 kB 00:00 (11/152): ca-certificates-2023.2.60-2.fc38.noar 10 MB/s | 845 kB 00:00 (12/152): binutils-2.40-9.fc39.x86_64.rpm 14 MB/s | 5.6 MB 00:00 (13/152): cpio-2.14-2.fc39.x86_64.rpm 4.0 MB/s | 279 kB 00:00 (14/152): coreutils-9.3-1.fc39.x86_64.rpm 8.4 MB/s | 1.1 MB 00:00 (15/152): coreutils-common-9.3-1.fc39.x86_64.rp 17 MB/s | 2.1 MB 00:00 (16/152): cracklib-2.9.7-31.fc38.x86_64.rpm 1.8 MB/s | 92 kB 00:00 (17/152): crypto-policies-20230420-1.git3d08ae7 1.5 MB/s | 94 kB 00:00 (18/152): curl-8.1.2-1.fc39.x86_64.rpm 6.1 MB/s | 345 kB 00:00 (19/152): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 13 MB/s | 792 kB 00:00 (20/152): debugedit-5.0-7.fc38.x86_64.rpm 1.5 MB/s | 78 kB 00:00 (21/152): diffutils-3.9-4.fc39.x86_64.rpm 6.9 MB/s | 397 kB 00:00 (22/152): dwz-0.15-2.fc38.x86_64.rpm 2.5 MB/s | 135 kB 00:00 (23/152): ed-1.19-2.fc38.x86_64.rpm 1.6 MB/s | 78 kB 00:00 (24/152): efi-srpm-macros-5-8.fc39.noarch.rpm 410 kB/s | 22 kB 00:00 (25/152): elfutils-0.189-2.fc39.x86_64.rpm 8.9 MB/s | 536 kB 00:00 (26/152): elfutils-debuginfod-client-0.189-2.fc 808 kB/s | 39 kB 00:00 (27/152): elfutils-default-yama-scope-0.189-2.f 312 kB/s | 15 kB 00:00 (28/152): elfutils-libelf-0.189-2.fc39.x86_64.r 3.8 MB/s | 196 kB 00:00 (29/152): elfutils-libs-0.189-2.fc39.x86_64.rpm 4.8 MB/s | 260 kB 00:00 (30/152): fedora-gpg-keys-39-0.1.noarch.rpm 1.9 MB/s | 126 kB 00:00 (31/152): fedora-release-39-0.14.noarch.rpm 113 kB/s | 6.6 kB 00:00 (32/152): fedora-release-common-39-0.14.noarch. 259 kB/s | 17 kB 00:00 (33/152): fedora-release-identity-basic-39-0.14 153 kB/s | 7.4 kB 00:00 (34/152): fedora-repos-39-0.1.noarch.rpm 199 kB/s | 9.4 kB 00:00 (35/152): fedora-repos-rawhide-39-0.1.noarch.rp 188 kB/s | 9.0 kB 00:00 (36/152): file-5.44-3.fc39.x86_64.rpm 1.0 MB/s | 50 kB 00:00 (37/152): file-libs-5.44-3.fc39.x86_64.rpm 12 MB/s | 730 kB 00:00 (38/152): filesystem-3.18-4.fc39.x86_64.rpm 12 MB/s | 1.1 MB 00:00 (39/152): findutils-4.9.0-4.fc39.x86_64.rpm 7.3 MB/s | 491 kB 00:00 (40/152): fonts-srpm-macros-2.0.5-11.fc38.noarc 485 kB/s | 26 kB 00:00 (41/152): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 155 kB/s | 7.8 kB 00:00 (42/152): gawk-5.2.2-1.fc39.x86_64.rpm 14 MB/s | 1.1 MB 00:00 (43/152): gdbm-libs-1.23-3.fc38.x86_64.rpm 678 kB/s | 56 kB 00:00 (44/152): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 99 kB/s | 8.0 kB 00:00 (45/152): gdb-minimal-13.1-5.fc39.x86_64.rpm 26 MB/s | 4.2 MB 00:00 (46/152): glibc-common-2.37.9000-13.fc39.x86_64 4.1 MB/s | 339 kB 00:00 (47/152): glibc-minimal-langpack-2.37.9000-13.f 934 kB/s | 59 kB 00:00 (48/152): gmp-6.2.1-4.fc38.x86_64.rpm 5.0 MB/s | 313 kB 00:00 (49/152): glibc-gconv-extra-2.37.9000-13.fc39.x 7.6 MB/s | 1.6 MB 00:00 (50/152): glibc-2.37.9000-13.fc39.x86_64.rpm 8.3 MB/s | 2.2 MB 00:00 (51/152): gnat-srpm-macros-6-2.fc38.noarch.rpm 186 kB/s | 8.8 kB 00:00 (52/152): go-srpm-macros-3.2.0-3.fc39.noarch.rp 572 kB/s | 27 kB 00:00 (53/152): grep-3.11-1.fc39.x86_64.rpm 4.8 MB/s | 298 kB 00:00 (54/152): gzip-1.12-3.fc38.x86_64.rpm 3.2 MB/s | 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tzdata-2023c-1.fc39.noarch.rpm 9.6 MB/s | 718 kB 00:00 (143/152): unzip-6.0-60.fc38.x86_64.rpm 2.5 MB/s | 184 kB 00:00 (144/152): util-linux-2.39-4.fc39.x86_64.rpm 14 MB/s | 1.2 MB 00:00 (145/152): util-linux-core-2.39-4.fc39.x86_64.r 7.3 MB/s | 492 kB 00:00 (146/152): which-2.21-39.fc39.x86_64.rpm 726 kB/s | 42 kB 00:00 (147/152): xxhash-libs-0.8.1-4.fc38.x86_64.rpm 773 kB/s | 40 kB 00:00 (148/152): xz-5.4.3-1.fc39.x86_64.rpm 8.4 MB/s | 555 kB 00:00 (149/152): xz-libs-5.4.3-1.fc39.x86_64.rpm 1.7 MB/s | 108 kB 00:00 (150/152): zip-3.0-36.fc38.x86_64.rpm 4.7 MB/s | 265 kB 00:00 (151/152): zlib-1.2.13-3.fc38.x86_64.rpm 1.8 MB/s | 95 kB 00:00 (152/152): zstd-1.5.5-1.fc39.x86_64.rpm 6.8 MB/s | 482 kB 00:00 -------------------------------------------------------------------------------- Total 14 MB/s | 53 MB 00:03 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-2.fc39.x86_64 1/152 Running scriptlet: libgcc-13.1.1-2.fc39.x86_64 1/152 Installing : crypto-policies-20230420-1.git3d08ae7.fc39.noarc 2/152 Running scriptlet: crypto-policies-20230420-1.git3d08ae7.fc39.noarc 2/152 Installing : tzdata-2023c-1.fc39.noarch 3/152 Installing : fedora-release-identity-basic-39-0.14.noarch 4/152 Installing : rust-srpm-macros-24-2.fc39.noarch 5/152 Installing : qt5-srpm-macros-5.15.9-1.fc39.noarch 6/152 Installing : pyproject-srpm-macros-1.9.0-1.fc39.noarch 7/152 Installing : publicsuffix-list-dafsa-20230318-1.fc39.noarch 8/152 Installing : pkgconf-m4-1.9.4-2.fc39.noarch 9/152 Installing : perl-srpm-macros-1-48.fc38.noarch 10/152 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 11/152 Installing : package-notes-srpm-macros-0.5-8.fc39.noarch 12/152 Installing : openblas-srpm-macros-2-13.fc38.noarch 13/152 Installing : 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Installing : pkgconf-1.9.4-2.fc39.x86_64 103/152 Installing : pkgconf-pkg-config-1.9.4-2.fc39.x86_64 104/152 Installing : libsigsegv-2.14-4.fc38.x86_64 105/152 Installing : gawk-5.2.2-1.fc39.x86_64 106/152 Installing : libtasn1-4.19.0-2.fc38.x86_64 107/152 Installing : p11-kit-trust-0.24.1-6.fc38.x86_64 108/152 Running scriptlet: p11-kit-trust-0.24.1-6.fc38.x86_64 108/152 Installing : libverto-0.3.2-5.fc38.x86_64 109/152 Installing : xxhash-libs-0.8.1-4.fc38.x86_64 110/152 Installing : coreutils-common-9.3-1.fc39.x86_64 111/152 Installing : openssl-libs-1:3.0.8-2.fc39.x86_64 112/152 Installing : coreutils-9.3-1.fc39.x86_64 113/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 114/152 Installing : ca-certificates-2023.2.60-2.fc38.noarch 114/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 114/152 Installing : krb5-libs-1.20.1-9.fc39.x86_64 115/152 Installing : libtirpc-1.3.3-1.rc1.fc39.x86_64 116/152 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 117/152 Installing : authselect-libs-1.4.2-2.fc38.x86_64 117/152 Installing : gzip-1.12-3.fc38.x86_64 118/152 Installing : cracklib-2.9.7-31.fc38.x86_64 119/152 Installing : libpwquality-1.4.5-3.fc38.x86_64 120/152 Installing : authselect-1.4.2-2.fc38.x86_64 121/152 Installing : libnsl2-2.0.0-5.fc38.x86_64 122/152 Installing : pam-1.5.3-1.fc39.x86_64 123/152 Installing : libssh-0.10.5-1.fc39.x86_64 124/152 Installing : libarchive-3.6.1-5.fc39.x86_64 125/152 Installing : libevent-2.1.12-8.fc38.x86_64 126/152 Installing : openldap-2.6.4-2.fc39.x86_64 127/152 Installing : libcurl-8.1.2-1.fc39.x86_64 128/152 Installing : elfutils-libs-0.189-2.fc39.x86_64 129/152 Installing : elfutils-debuginfod-client-0.189-2.fc39.x86_64 130/152 Installing : binutils-gold-2.40-9.fc39.x86_64 131/152 Installing : binutils-2.40-9.fc39.x86_64 132/152 Running scriptlet: binutils-2.40-9.fc39.x86_64 132/152 Installing : elfutils-0.189-2.fc39.x86_64 133/152 Installing : gdb-minimal-13.1-5.fc39.x86_64 134/152 Installing : debugedit-5.0-7.fc38.x86_64 135/152 Installing : curl-8.1.2-1.fc39.x86_64 136/152 Installing : rpm-sequoia-1.4.0-3.fc39.x86_64 137/152 Installing : rpm-libs-4.18.91-1.fc39.x86_64 138/152 Running scriptlet: rpm-4.18.91-1.fc39.x86_64 139/152 Installing : rpm-4.18.91-1.fc39.x86_64 139/152 Installing : efi-srpm-macros-5-8.fc39.noarch 140/152 Installing : lua-srpm-macros-1-8.fc38.noarch 141/152 Installing : rpmautospec-rpm-macros-0.3.5-2.fc39.noarch 142/152 Installing : rpm-build-libs-4.18.91-1.fc39.x86_64 143/152 Installing : ansible-srpm-macros-1-10.fc39.noarch 144/152 Installing : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 145/152 Installing : go-srpm-macros-3.2.0-3.fc39.noarch 146/152 Installing : python-srpm-macros-3.11-10.fc39.noarch 147/152 Installing : redhat-rpm-config-254-1.fc39.noarch 148/152 Installing : rpm-build-4.18.91-1.fc39.x86_64 149/152 Installing : util-linux-2.39-4.fc39.x86_64 150/152 Installing : which-2.21-39.fc39.x86_64 151/152 Installing : info-7.0.3-2.fc39.x86_64 152/152 Running scriptlet: filesystem-3.18-4.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 152/152 Running scriptlet: rpm-4.18.91-1.fc39.x86_64 152/152 Running scriptlet: info-7.0.3-2.fc39.x86_64 152/152 Verifying : alternatives-1.24-1.fc39.x86_64 1/152 Verifying : ansible-srpm-macros-1-10.fc39.noarch 2/152 Verifying : audit-libs-3.1.1-1.fc39.x86_64 3/152 Verifying : authselect-1.4.2-2.fc38.x86_64 4/152 Verifying : authselect-libs-1.4.2-2.fc38.x86_64 5/152 Verifying : basesystem-11-17.fc39.noarch 6/152 Verifying : bash-5.2.15-3.fc38.x86_64 7/152 Verifying : binutils-2.40-9.fc39.x86_64 8/152 Verifying : binutils-gold-2.40-9.fc39.x86_64 9/152 Verifying : bzip2-1.0.8-13.fc38.x86_64 10/152 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 11/152 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 12/152 Verifying : coreutils-9.3-1.fc39.x86_64 13/152 Verifying : coreutils-common-9.3-1.fc39.x86_64 14/152 Verifying : cpio-2.14-2.fc39.x86_64 15/152 Verifying : cracklib-2.9.7-31.fc38.x86_64 16/152 Verifying : crypto-policies-20230420-1.git3d08ae7.fc39.noarc 17/152 Verifying : curl-8.1.2-1.fc39.x86_64 18/152 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 19/152 Verifying : debugedit-5.0-7.fc38.x86_64 20/152 Verifying : diffutils-3.9-4.fc39.x86_64 21/152 Verifying : dwz-0.15-2.fc38.x86_64 22/152 Verifying : ed-1.19-2.fc38.x86_64 23/152 Verifying : efi-srpm-macros-5-8.fc39.noarch 24/152 Verifying : elfutils-0.189-2.fc39.x86_64 25/152 Verifying : elfutils-debuginfod-client-0.189-2.fc39.x86_64 26/152 Verifying : elfutils-default-yama-scope-0.189-2.fc39.noarch 27/152 Verifying : elfutils-libelf-0.189-2.fc39.x86_64 28/152 Verifying : elfutils-libs-0.189-2.fc39.x86_64 29/152 Verifying : fedora-gpg-keys-39-0.1.noarch 30/152 Verifying : fedora-release-39-0.14.noarch 31/152 Verifying : fedora-release-common-39-0.14.noarch 32/152 Verifying : fedora-release-identity-basic-39-0.14.noarch 33/152 Verifying : fedora-repos-39-0.1.noarch 34/152 Verifying : fedora-repos-rawhide-39-0.1.noarch 35/152 Verifying : file-5.44-3.fc39.x86_64 36/152 Verifying : file-libs-5.44-3.fc39.x86_64 37/152 Verifying : filesystem-3.18-4.fc39.x86_64 38/152 Verifying : findutils-1:4.9.0-4.fc39.x86_64 39/152 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/152 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/152 Verifying : gawk-5.2.2-1.fc39.x86_64 42/152 Verifying : gdb-minimal-13.1-5.fc39.x86_64 43/152 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/152 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/152 Verifying : glibc-2.37.9000-13.fc39.x86_64 46/152 Verifying : glibc-common-2.37.9000-13.fc39.x86_64 47/152 Verifying : glibc-gconv-extra-2.37.9000-13.fc39.x86_64 48/152 Verifying : glibc-minimal-langpack-2.37.9000-13.fc39.x86_64 49/152 Verifying : gmp-1:6.2.1-4.fc38.x86_64 50/152 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/152 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 52/152 Verifying : grep-3.11-1.fc39.x86_64 53/152 Verifying : gzip-1.12-3.fc38.x86_64 54/152 Verifying : info-7.0.3-2.fc39.x86_64 55/152 Verifying : jansson-2.13.1-6.fc38.x86_64 56/152 Verifying : kernel-srpm-macros-1.0-18.fc39.noarch 57/152 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 58/152 Verifying : krb5-libs-1.20.1-9.fc39.x86_64 59/152 Verifying : libacl-2.3.1-7.fc39.x86_64 60/152 Verifying : libarchive-3.6.1-5.fc39.x86_64 61/152 Verifying : libattr-2.5.1-7.fc39.x86_64 62/152 Verifying : libblkid-2.39-4.fc39.x86_64 63/152 Verifying : libbrotli-1.0.9-11.fc38.x86_64 64/152 Verifying : libcap-2.48-6.fc38.x86_64 65/152 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 66/152 Verifying : libcom_err-1.47.0-1.fc39.x86_64 67/152 Verifying : libcurl-8.1.2-1.fc39.x86_64 68/152 Verifying : libdb-5.3.28-55.fc38.x86_64 69/152 Verifying : libeconf-0.4.0-5.fc38.x86_64 70/152 Verifying : libevent-2.1.12-8.fc38.x86_64 71/152 Verifying : libfdisk-2.39-4.fc39.x86_64 72/152 Verifying : libffi-3.4.4-2.fc38.x86_64 73/152 Verifying : libgcc-13.1.1-2.fc39.x86_64 74/152 Verifying : libgomp-13.1.1-2.fc39.x86_64 75/152 Verifying : libidn2-2.3.4-2.fc38.x86_64 76/152 Verifying : libmount-2.39-4.fc39.x86_64 77/152 Verifying : libnghttp2-1.54.0-1.fc39.x86_64 78/152 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/152 Verifying : libpkgconf-1.9.4-2.fc39.x86_64 80/152 Verifying : libpsl-0.21.2-2.fc38.x86_64 81/152 Verifying : libpwquality-1.4.5-3.fc38.x86_64 82/152 Verifying : libselinux-3.5-1.fc39.x86_64 83/152 Verifying : libsemanage-3.5-2.fc39.x86_64 84/152 Verifying : libsepol-3.5-1.fc39.x86_64 85/152 Verifying : libsigsegv-2.14-4.fc38.x86_64 86/152 Verifying : libsmartcols-2.39-4.fc39.x86_64 87/152 Verifying : libssh-0.10.5-1.fc39.x86_64 88/152 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/152 Verifying : libstdc++-13.1.1-2.fc39.x86_64 90/152 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/152 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 92/152 Verifying : libunistring1.0-1.0-1.fc38.x86_64 93/152 Verifying : libutempter-1.2.1-9.fc39.x86_64 94/152 Verifying : libuuid-2.39-4.fc39.x86_64 95/152 Verifying : libverto-0.3.2-5.fc38.x86_64 96/152 Verifying : libxcrypt-4.4.35-1.fc39.x86_64 97/152 Verifying : libxml2-2.10.4-1.fc39.x86_64 98/152 Verifying : libzstd-1.5.5-1.fc39.x86_64 99/152 Verifying : lua-libs-5.4.4-9.fc39.x86_64 100/152 Verifying : lua-srpm-macros-1-8.fc38.noarch 101/152 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 102/152 Verifying : mpfr-4.1.1-3.fc38.x86_64 103/152 Verifying : ncurses-base-6.4-4.20230520.fc39.noarch 104/152 Verifying : ncurses-libs-6.4-4.20230520.fc39.x86_64 105/152 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 106/152 Verifying : openblas-srpm-macros-2-13.fc38.noarch 107/152 Verifying : openldap-2.6.4-2.fc39.x86_64 108/152 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 109/152 Verifying : p11-kit-0.24.1-6.fc38.x86_64 110/152 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 111/152 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 112/152 Verifying : pam-1.5.3-1.fc39.x86_64 113/152 Verifying : pam-libs-1.5.3-1.fc39.x86_64 114/152 Verifying : patch-2.7.6-21.fc39.x86_64 115/152 Verifying : pcre2-10.42-1.fc38.1.x86_64 116/152 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 117/152 Verifying : perl-srpm-macros-1-48.fc38.noarch 118/152 Verifying : pkgconf-1.9.4-2.fc39.x86_64 119/152 Verifying : pkgconf-m4-1.9.4-2.fc39.noarch 120/152 Verifying : pkgconf-pkg-config-1.9.4-2.fc39.x86_64 121/152 Verifying : popt-1.19-2.fc38.x86_64 122/152 Verifying : publicsuffix-list-dafsa-20230318-1.fc39.noarch 123/152 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 124/152 Verifying : python-srpm-macros-3.11-10.fc39.noarch 125/152 Verifying : qt5-srpm-macros-5.15.9-1.fc39.noarch 126/152 Verifying : readline-8.2-3.fc38.x86_64 127/152 Verifying : redhat-rpm-config-254-1.fc39.noarch 128/152 Verifying : rpm-4.18.91-1.fc39.x86_64 129/152 Verifying : rpm-build-4.18.91-1.fc39.x86_64 130/152 Verifying : rpm-build-libs-4.18.91-1.fc39.x86_64 131/152 Verifying : rpm-libs-4.18.91-1.fc39.x86_64 132/152 Verifying : rpm-sequoia-1.4.0-3.fc39.x86_64 133/152 Verifying : rpmautospec-rpm-macros-0.3.5-2.fc39.noarch 134/152 Verifying : rust-srpm-macros-24-2.fc39.noarch 135/152 Verifying : sed-4.8-12.fc38.x86_64 136/152 Verifying : setup-2.14.3-3.fc39.noarch 137/152 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 138/152 Verifying : sqlite-libs-3.41.2-2.fc39.x86_64 139/152 Verifying : systemd-libs-253.5-1.fc39.x86_64 140/152 Verifying : tar-2:1.34-8.fc39.x86_64 141/152 Verifying : tzdata-2023c-1.fc39.noarch 142/152 Verifying : unzip-6.0-60.fc38.x86_64 143/152 Verifying : util-linux-2.39-4.fc39.x86_64 144/152 Verifying : util-linux-core-2.39-4.fc39.x86_64 145/152 Verifying : which-2.21-39.fc39.x86_64 146/152 Verifying : xxhash-libs-0.8.1-4.fc38.x86_64 147/152 Verifying : xz-5.4.3-1.fc39.x86_64 148/152 Verifying : xz-libs-5.4.3-1.fc39.x86_64 149/152 Verifying : zip-3.0-36.fc38.x86_64 150/152 Verifying : zlib-1.2.13-3.fc38.x86_64 151/152 Verifying : zstd-1.5.5-1.fc39.x86_64 152/152 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-1.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-9.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.14-2.fc39.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230420-1.git3d08ae7.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-7.fc38.x86_64 diffutils-3.9-4.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-2.fc39.x86_64 elfutils-debuginfod-client-0.189-2.fc39.x86_64 elfutils-default-yama-scope-0.189-2.fc39.noarch elfutils-libelf-0.189-2.fc39.x86_64 elfutils-libs-0.189-2.fc39.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.14.noarch fedora-release-common-39-0.14.noarch fedora-release-identity-basic-39-0.14.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-5.44-3.fc39.x86_64 file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.x86_64 gdb-minimal-13.1-5.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-13.fc39.x86_64 glibc-common-2.37.9000-13.fc39.x86_64 glibc-gconv-extra-2.37.9000-13.fc39.x86_64 glibc-minimal-langpack-2.37.9000-13.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-18.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39-4.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39-4.fc39.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.1.1-2.fc39.x86_64 libgomp-13.1.1-2.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39-4.fc39.x86_64 libnghttp2-1.54.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.4-2.fc39.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39-4.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-2.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39-4.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.35-1.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-4.20230520.fc39.noarch ncurses-libs-6.4-4.20230520.fc39.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-2.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.9.4-2.fc39.x86_64 pkgconf-m4-1.9.4-2.fc39.noarch pkgconf-pkg-config-1.9.4-2.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.11-10.fc39.noarch qt5-srpm-macros-5.15.9-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-254-1.fc39.noarch rpm-4.18.91-1.fc39.x86_64 rpm-build-4.18.91-1.fc39.x86_64 rpm-build-libs-4.18.91-1.fc39.x86_64 rpm-libs-4.18.91-1.fc39.x86_64 rpm-sequoia-1.4.0-3.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-2.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.41.2-2.fc39.x86_64 systemd-libs-253.5-1.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39-4.fc39.x86_64 util-linux-core-2.39-4.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: file-5.44-3.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libuuid-2.39-4.fc39.x86_64 libffi-3.4.4-2.fc38.x86_64 perl-srpm-macros-1-48.fc38.noarch zlib-1.2.13-3.fc38.x86_64 openssl-libs-3.0.8-2.fc39.x86_64 fedora-repos-39-0.1.noarch gdb-minimal-13.1-5.fc39.x86_64 rpm-build-4.18.91-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 pkgconf-1.9.4-2.fc39.x86_64 which-2.21-39.fc39.x86_64 libmount-2.39-4.fc39.x86_64 tzdata-2023c-1.fc39.noarch fpc-srpm-macros-1.3-7.fc38.noarch rpm-4.18.91-1.fc39.x86_64 openldap-2.6.4-2.fc39.x86_64 fedora-release-common-39-0.14.noarch pam-libs-1.5.3-1.fc39.x86_64 gpg-pubkey-18b8e74c-62f2920f p11-kit-trust-0.24.1-6.fc38.x86_64 libsepol-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230420-1.git3d08ae7.fc39.noarch coreutils-9.3-1.fc39.x86_64 redhat-rpm-config-254-1.fc39.noarch p11-kit-0.24.1-6.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 elfutils-debuginfod-client-0.189-2.fc39.x86_64 gzip-1.12-3.fc38.x86_64 util-linux-2.39-4.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 ed-1.19-2.fc38.x86_64 findutils-4.9.0-4.fc39.x86_64 debugedit-5.0-7.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch authselect-libs-1.4.2-2.fc38.x86_64 unzip-6.0-60.fc38.x86_64 curl-8.1.2-1.fc39.x86_64 libpkgconf-1.9.4-2.fc39.x86_64 rpm-libs-4.18.91-1.fc39.x86_64 elfutils-libs-0.189-2.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 authselect-1.4.2-2.fc38.x86_64 elfutils-default-yama-scope-0.189-2.fc39.noarch libverto-0.3.2-5.fc38.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 basesystem-11-17.fc39.noarch ocaml-srpm-macros-7-3.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch jansson-2.13.1-6.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libarchive-3.6.1-5.fc39.x86_64 ncurses-libs-6.4-4.20230520.fc39.x86_64 gmp-6.2.1-4.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 gnat-srpm-macros-6-2.fc38.noarch krb5-libs-1.20.1-9.fc39.x86_64 libstdc++-13.1.1-2.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 rpm-sequoia-1.4.0-3.fc39.x86_64 libcap-2.48-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libfdisk-2.39-4.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 binutils-gold-2.40-9.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch glibc-minimal-langpack-2.37.9000-13.fc39.x86_64 util-linux-core-2.39-4.fc39.x86_64 glibc-gconv-extra-2.37.9000-13.fc39.x86_64 fedora-repos-rawhide-39-0.1.noarch alternatives-1.24-1.fc39.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch rpmautospec-rpm-macros-0.3.5-2.fc39.noarch xz-5.4.3-1.fc39.x86_64 pkgconf-pkg-config-1.9.4-2.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch libgcc-13.1.1-2.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 setup-2.14.3-3.fc39.noarch gdbm-libs-1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch libxcrypt-4.4.35-1.fc39.x86_64 fedora-release-identity-basic-39-0.14.noarch fedora-release-39-0.14.noarch bash-5.2.15-3.fc38.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch readline-8.2-3.fc38.x86_64 sqlite-libs-3.41.2-2.fc39.x86_64 elfutils-libelf-0.189-2.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 mpfr-4.1.1-3.fc38.x86_64 dwz-0.15-2.fc38.x86_64 glibc-2.37.9000-13.fc39.x86_64 tar-1.34-8.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch publicsuffix-list-dafsa-20230318-1.fc39.noarch grep-3.11-1.fc39.x86_64 fedora-gpg-keys-39-0.1.noarch rpm-build-libs-4.18.91-1.fc39.x86_64 libnghttp2-1.54.0-1.fc39.x86_64 file-libs-5.44-3.fc39.x86_64 python-srpm-macros-3.11-10.fc39.noarch ansible-srpm-macros-1-10.fc39.noarch libattr-2.5.1-7.fc39.x86_64 pkgconf-m4-1.9.4-2.fc39.noarch bzip2-1.0.8-13.fc38.x86_64 pam-1.5.3-1.fc39.x86_64 gpg-pubkey-eb10b464-6202d9c6 efi-srpm-macros-5-8.fc39.noarch diffutils-3.9-4.fc39.x86_64 libpsl-0.21.2-2.fc38.x86_64 libblkid-2.39-4.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 libgomp-13.1.1-2.fc39.x86_64 kernel-srpm-macros-1.0-18.fc39.noarch qt5-srpm-macros-5.15.9-1.fc39.noarch libutempter-1.2.1-9.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 info-7.0.3-2.fc39.x86_64 libsmartcols-2.39-4.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 systemd-libs-253.5-1.fc39.x86_64 pyproject-srpm-macros-1.9.0-1.fc39.noarch libzstd-1.5.5-1.fc39.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 cpio-2.14-2.fc39.x86_64 binutils-2.40-9.fc39.x86_64 glibc-common-2.37.9000-13.fc39.x86_64 audit-libs-3.1.1-1.fc39.x86_64 elfutils-0.189-2.fc39.x86_64 openblas-srpm-macros-2-13.fc38.noarch libselinux-3.5-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 shadow-utils-4.13-7.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 sed-4.8-12.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 ncurses-base-6.4-4.20230520.fc39.noarch rust-srpm-macros-24-2.fc39.noarch Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674000000 Wrote: /builddir/build/SRPMS/bwa-0.7.17-9.fc39.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-mpw6dt4h/bwa/bwa.spec) Config(child) 0 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bwa-0.7.17-9.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1686591773.353315 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bwa-0.7.17-9.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 37 kB/s | 1.8 kB 00:00 fedora 501 kB/s | 23 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bwa-0.7.17-9.fc39.src.rpm Start: build setup for bwa-0.7.17-9.fc39.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674000000 Wrote: /builddir/build/SRPMS/bwa-0.7.17-9.fc39.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 35 kB/s | 1.8 kB 00:00 fedora 16 kB/s | 23 kB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: gcc x86_64 13.1.1-2.fc39 fedora 34 M make x86_64 1:4.4.1-1.fc39 fedora 589 k perl-generators noarch 1.16-2.fc38 fedora 17 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Installing dependencies: annobin-docs noarch 12.12-1.fc39 fedora 95 k annobin-plugin-gcc x86_64 12.12-1.fc39 fedora 894 k cpp x86_64 13.1.1-2.fc39 fedora 11 M gc x86_64 8.2.2-3.fc38 fedora 110 k gcc-plugin-annobin x86_64 13.1.1-2.fc39 fedora 44 k glibc-devel x86_64 2.37.9000-13.fc39 fedora 74 k glibc-headers-x86 noarch 2.37.9000-13.fc39 fedora 556 k groff-base x86_64 1.22.4-11.fc38 fedora 1.1 M guile22 x86_64 2.2.7-8.fc39 fedora 6.5 M kernel-headers x86_64 6.4.0-0.rc5.git0.1.fc39 fedora 1.5 M libmpc x86_64 1.3.1-2.fc38 fedora 70 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libunistring x86_64 1.1-3.fc38 fedora 545 k libxcrypt-devel x86_64 4.4.35-1.fc39 fedora 30 k ncurses x86_64 6.4-4.20230520.fc39 fedora 415 k perl-Carp noarch 1.54-1.fc39 fedora 29 k perl-Class-Struct noarch 0.66-497.fc39 fedora 23 k perl-DynaLoader x86_64 1.52-497.fc39 fedora 27 k perl-Encode x86_64 4:3.19-493.fc38 fedora 1.7 M perl-Errno x86_64 1.36-497.fc39 fedora 16 k perl-Exporter noarch 5.77-490.fc38 fedora 31 k perl-Fcntl x86_64 1.15-497.fc39 fedora 22 k perl-Fedora-VSP noarch 0.001-31.fc38 fedora 23 k perl-File-Basename noarch 2.85-497.fc39 fedora 18 k perl-File-Path noarch 2.18-490.fc38 fedora 35 k perl-File-Temp noarch 1:0.231.100-490.fc38 fedora 59 k perl-File-stat noarch 1.12-497.fc39 fedora 18 k perl-Getopt-Long noarch 1:2.54-2.fc38 fedora 60 k perl-Getopt-Std noarch 1.13-497.fc39 fedora 17 k perl-HTTP-Tiny noarch 0.082-2.fc38 fedora 55 k perl-IO x86_64 1.50-497.fc39 fedora 93 k perl-IPC-Open3 noarch 1.22-497.fc39 fedora 24 k perl-MIME-Base64 x86_64 3.16-490.fc38 fedora 30 k perl-POSIX x86_64 2.03-497.fc39 fedora 99 k perl-PathTools x86_64 3.89-1.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-490.fc38 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-491.fc38 fedora 86 k perl-Pod-Simple noarch 1:3.45-2.fc39 fedora 219 k perl-Pod-Usage noarch 4:2.03-4.fc38 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-490.fc38 fedora 72 k perl-SelectSaver noarch 1.02-497.fc39 fedora 13 k perl-Socket x86_64 4:2.037-1.fc39 fedora 55 k perl-Storable x86_64 1:3.31-1.fc39 fedora 97 k perl-Symbol noarch 1.09-497.fc39 fedora 15 k perl-Term-ANSIColor noarch 5.01-491.fc38 fedora 47 k perl-Term-Cap noarch 1.18-1.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-490.fc38 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-1.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-1.fc39 fedora 34 k perl-constant noarch 1.33-492.fc39 fedora 23 k perl-if noarch 0.61.000-497.fc39 fedora 15 k perl-interpreter x86_64 4:5.36.1-497.fc39 fedora 73 k perl-libs x86_64 4:5.36.1-497.fc39 fedora 2.2 M perl-locale noarch 1.10-497.fc39 fedora 15 k perl-macros noarch 4:5.36.1-497.fc39 fedora 13 k perl-mro x86_64 1.26-497.fc39 fedora 30 k perl-overload noarch 1.35-497.fc39 fedora 47 k perl-overloading noarch 0.02-497.fc39 fedora 14 k perl-parent noarch 1:0.241-1.fc39 fedora 14 k perl-podlators noarch 1:5.01-2.fc38 fedora 125 k perl-vars noarch 1.05-497.fc39 fedora 14 k Transaction Summary ================================================================================ Install 65 Packages Total download size: 63 M Installed size: 207 M Downloading Packages: (1/65): annobin-docs-12.12-1.fc39.noarch.rpm 277 kB/s | 95 kB 00:00 (2/65): gc-8.2.2-3.fc38.x86_64.rpm 962 kB/s | 110 kB 00:00 (3/65): annobin-plugin-gcc-12.12-1.fc39.x86_64. 843 kB/s | 894 kB 00:01 (4/65): gcc-plugin-annobin-13.1.1-2.fc39.x86_64 797 kB/s | 44 kB 00:00 (5/65): glibc-devel-2.37.9000-13.fc39.x86_64.rp 1.0 MB/s | 74 kB 00:00 (6/65): glibc-headers-x86-2.37.9000-13.fc39.noa 822 kB/s | 556 kB 00:00 (7/65): groff-base-1.22.4-11.fc38.x86_64.rpm 930 kB/s | 1.1 MB 00:01 (8/65): guile22-2.2.7-8.fc39.x86_64.rpm 924 kB/s | 6.5 MB 00:07 (9/65): kernel-headers-6.4.0-0.rc5.git0.1.fc39. 624 kB/s | 1.5 MB 00:02 (10/65): libmpc-1.3.1-2.fc38.x86_64.rpm 468 kB/s | 70 kB 00:00 (11/65): libtool-ltdl-2.4.7-6.fc38.x86_64.rpm 263 kB/s | 37 kB 00:00 (12/65): libunistring-1.1-3.fc38.x86_64.rpm 554 kB/s | 545 kB 00:00 (13/65): libxcrypt-devel-4.4.35-1.fc39.x86_64.r 648 kB/s | 30 kB 00:00 (14/65): make-4.4.1-1.fc39.x86_64.rpm 661 kB/s | 589 kB 00:00 (15/65): ncurses-6.4-4.20230520.fc39.x86_64.rpm 808 kB/s | 415 kB 00:00 (16/65): perl-Carp-1.54-1.fc39.noarch.rpm 537 kB/s | 29 kB 00:00 (17/65): perl-Class-Struct-0.66-497.fc39.noarch 508 kB/s | 23 kB 00:00 (18/65): perl-DynaLoader-1.52-497.fc39.x86_64.r 546 kB/s | 27 kB 00:00 (19/65): cpp-13.1.1-2.fc39.x86_64.rpm 649 kB/s | 11 MB 00:17 (20/65): perl-Errno-1.36-497.fc39.x86_64.rpm 278 kB/s | 16 kB 00:00 (21/65): perl-Exporter-5.77-490.fc38.noarch.rpm 447 kB/s | 31 kB 00:00 (22/65): perl-Fcntl-1.15-497.fc39.x86_64.rpm 369 kB/s | 22 kB 00:00 (23/65): perl-Fedora-VSP-0.001-31.fc38.noarch.r 348 kB/s | 23 kB 00:00 (24/65): perl-Encode-3.19-493.fc38.x86_64.rpm 1.0 MB/s | 1.7 MB 00:01 (25/65): perl-File-Basename-2.85-497.fc39.noarc 317 kB/s | 18 kB 00:00 (26/65): perl-File-Path-2.18-490.fc38.noarch.rp 600 kB/s | 35 kB 00:00 (27/65): perl-File-stat-1.12-497.fc39.noarch.rp 329 kB/s | 18 kB 00:00 (28/65): perl-File-Temp-0.231.100-490.fc38.noar 535 kB/s | 59 kB 00:00 (29/65): perl-Getopt-Long-2.54-2.fc38.noarch.rp 1.2 MB/s | 60 kB 00:00 (30/65): perl-Getopt-Std-1.13-497.fc39.noarch.r 340 kB/s | 17 kB 00:00 (31/65): perl-HTTP-Tiny-0.082-2.fc38.noarch.rpm 1.1 MB/s | 55 kB 00:00 (32/65): perl-IPC-Open3-1.22-497.fc39.noarch.rp 414 kB/s | 24 kB 00:00 (33/65): perl-IO-1.50-497.fc39.x86_64.rpm 851 kB/s | 93 kB 00:00 (34/65): perl-MIME-Base64-3.16-490.fc38.x86_64. 422 kB/s | 30 kB 00:00 (35/65): perl-POSIX-2.03-497.fc39.x86_64.rpm 659 kB/s | 99 kB 00:00 (36/65): perl-PathTools-3.89-1.fc39.x86_64.rpm 563 kB/s | 87 kB 00:00 (37/65): perl-Pod-Escapes-1.07-490.fc38.noarch. 247 kB/s | 20 kB 00:00 (38/65): perl-Pod-Perldoc-3.28.01-491.fc38.noar 567 kB/s | 86 kB 00:00 (39/65): perl-Pod-Usage-2.03-4.fc38.noarch.rpm 647 kB/s | 40 kB 00:00 (40/65): perl-Pod-Simple-3.45-2.fc39.noarch.rpm 775 kB/s | 219 kB 00:00 (41/65): perl-Scalar-List-Utils-1.63-490.fc38.x 538 kB/s | 72 kB 00:00 (42/65): perl-SelectSaver-1.02-497.fc39.noarch. 189 kB/s | 13 kB 00:00 (43/65): perl-Socket-2.037-1.fc39.x86_64.rpm 998 kB/s | 55 kB 00:00 (44/65): perl-Symbol-1.09-497.fc39.noarch.rpm 238 kB/s | 15 kB 00:00 (45/65): perl-Storable-3.31-1.fc39.x86_64.rpm 819 kB/s | 97 kB 00:00 (46/65): perl-Term-ANSIColor-5.01-491.fc38.noar 672 kB/s | 47 kB 00:00 (47/65): perl-Term-Cap-1.18-1.fc39.noarch.rpm 308 kB/s | 22 kB 00:00 (48/65): perl-Text-ParseWords-3.31-490.fc38.noa 257 kB/s | 16 kB 00:00 (49/65): perl-Text-Tabs+Wrap-2023.0511-1.fc39.n 338 kB/s | 22 kB 00:00 (50/65): perl-Time-Local-1.350-1.fc39.noarch.rp 661 kB/s | 34 kB 00:00 (51/65): perl-constant-1.33-492.fc39.noarch.rpm 468 kB/s | 23 kB 00:00 (52/65): perl-generators-1.16-2.fc38.noarch.rpm 300 kB/s | 17 kB 00:00 (53/65): perl-if-0.61.000-497.fc39.noarch.rpm 278 kB/s | 15 kB 00:00 (54/65): perl-interpreter-5.36.1-497.fc39.x86_6 633 kB/s | 73 kB 00:00 (55/65): perl-locale-1.10-497.fc39.noarch.rpm 245 kB/s | 15 kB 00:00 (56/65): perl-macros-5.36.1-497.fc39.noarch.rpm 224 kB/s | 13 kB 00:00 (57/65): perl-mro-1.26-497.fc39.x86_64.rpm 488 kB/s | 30 kB 00:00 (58/65): perl-overload-1.35-497.fc39.noarch.rpm 714 kB/s | 47 kB 00:00 (59/65): perl-overloading-0.02-497.fc39.noarch. 241 kB/s | 14 kB 00:00 (60/65): perl-parent-0.241-1.fc39.noarch.rpm 232 kB/s | 14 kB 00:00 (61/65): perl-podlators-5.01-2.fc38.noarch.rpm 853 kB/s | 125 kB 00:00 (62/65): perl-vars-1.05-497.fc39.noarch.rpm 186 kB/s | 14 kB 00:00 (63/65): zlib-devel-1.2.13-3.fc38.x86_64.rpm 234 kB/s | 45 kB 00:00 (64/65): perl-libs-5.36.1-497.fc39.x86_64.rpm 604 kB/s | 2.2 MB 00:03 (65/65): gcc-13.1.1-2.fc39.x86_64.rpm 708 kB/s | 34 MB 00:48 -------------------------------------------------------------------------------- Total 1.3 MB/s | 63 MB 00:49 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.3.1-2.fc38.x86_64 1/65 Installing : cpp-13.1.1-2.fc39.x86_64 2/65 Installing : ncurses-6.4-4.20230520.fc39.x86_64 3/65 Installing : libunistring-1.1-3.fc38.x86_64 4/65 Installing : libtool-ltdl-2.4.7-6.fc38.x86_64 5/65 Installing : kernel-headers-6.4.0-0.rc5.git0.1.fc39.x86_64 6/65 Running scriptlet: groff-base-1.22.4-11.fc38.x86_64 7/65 Installing : groff-base-1.22.4-11.fc38.x86_64 7/65 Running scriptlet: groff-base-1.22.4-11.fc38.x86_64 7/65 Installing : perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch 8/65 Installing : perl-if-0.61.000-497.fc39.noarch 9/65 Installing : perl-locale-1.10-497.fc39.noarch 10/65 Installing : perl-Time-Local-2:1.350-1.fc39.noarch 11/65 Installing : perl-File-Path-2.18-490.fc38.noarch 12/65 Installing : perl-Pod-Escapes-1:1.07-490.fc38.noarch 13/65 Installing : perl-Class-Struct-0.66-497.fc39.noarch 14/65 Installing : perl-Term-ANSIColor-5.01-491.fc38.noarch 15/65 Installing : perl-POSIX-2.03-497.fc39.x86_64 16/65 Installing : perl-IPC-Open3-1.22-497.fc39.noarch 17/65 Installing : perl-HTTP-Tiny-0.082-2.fc38.noarch 18/65 Installing : perl-File-Temp-1:0.231.100-490.fc38.noarch 19/65 Installing : perl-Term-Cap-1.18-1.fc39.noarch 20/65 Installing : perl-Pod-Simple-1:3.45-2.fc39.noarch 21/65 Installing : perl-Socket-4:2.037-1.fc39.x86_64 22/65 Installing : perl-SelectSaver-1.02-497.fc39.noarch 23/65 Installing : perl-Symbol-1.09-497.fc39.noarch 24/65 Installing : perl-File-stat-1.12-497.fc39.noarch 25/65 Installing : perl-podlators-1:5.01-2.fc38.noarch 26/65 Installing : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 27/65 Installing : perl-Fcntl-1.15-497.fc39.x86_64 28/65 Installing : perl-Text-ParseWords-3.31-490.fc38.noarch 29/65 Installing : perl-mro-1.26-497.fc39.x86_64 30/65 Installing : perl-IO-1.50-497.fc39.x86_64 31/65 Installing : perl-overloading-0.02-497.fc39.noarch 32/65 Installing : perl-Pod-Usage-4:2.03-4.fc38.noarch 33/65 Installing : perl-Errno-1.36-497.fc39.x86_64 34/65 Installing : perl-File-Basename-2.85-497.fc39.noarch 35/65 Installing : perl-Getopt-Std-1.13-497.fc39.noarch 36/65 Installing : perl-MIME-Base64-3.16-490.fc38.x86_64 37/65 Installing : perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 38/65 Installing : perl-constant-1.33-492.fc39.noarch 39/65 Installing : perl-Storable-1:3.31-1.fc39.x86_64 40/65 Installing : perl-overload-1.35-497.fc39.noarch 41/65 Installing : perl-parent-1:0.241-1.fc39.noarch 42/65 Installing : perl-vars-1.05-497.fc39.noarch 43/65 Installing : perl-Getopt-Long-1:2.54-2.fc38.noarch 44/65 Installing : perl-Carp-1.54-1.fc39.noarch 45/65 Installing : perl-Exporter-5.77-490.fc38.noarch 46/65 Installing : perl-PathTools-3.89-1.fc39.x86_64 47/65 Installing : perl-DynaLoader-1.52-497.fc39.x86_64 48/65 Installing : perl-Encode-4:3.19-493.fc38.x86_64 49/65 Installing : perl-libs-4:5.36.1-497.fc39.x86_64 50/65 Installing : perl-interpreter-4:5.36.1-497.fc39.x86_64 51/65 Installing : perl-macros-4:5.36.1-497.fc39.noarch 52/65 Installing : perl-Fedora-VSP-0.001-31.fc38.noarch 53/65 Installing : glibc-headers-x86-2.37.9000-13.fc39.noarch 54/65 Installing : libxcrypt-devel-4.4.35-1.fc39.x86_64 55/65 Installing : glibc-devel-2.37.9000-13.fc39.x86_64 56/65 Installing : gc-8.2.2-3.fc38.x86_64 57/65 Installing : guile22-2.2.7-8.fc39.x86_64 58/65 Installing : make-1:4.4.1-1.fc39.x86_64 59/65 Installing : gcc-13.1.1-2.fc39.x86_64 60/65 Running scriptlet: gcc-13.1.1-2.fc39.x86_64 60/65 Installing : annobin-docs-12.12-1.fc39.noarch 61/65 Installing : annobin-plugin-gcc-12.12-1.fc39.x86_64 62/65 Running scriptlet: annobin-plugin-gcc-12.12-1.fc39.x86_64 62/65 Installing : gcc-plugin-annobin-13.1.1-2.fc39.x86_64 63/65 Running scriptlet: gcc-plugin-annobin-13.1.1-2.fc39.x86_64 63/65 Installing : perl-generators-1.16-2.fc38.noarch 64/65 Installing : zlib-devel-1.2.13-3.fc38.x86_64 65/65 Running scriptlet: zlib-devel-1.2.13-3.fc38.x86_64 65/65 Verifying : annobin-docs-12.12-1.fc39.noarch 1/65 Verifying : annobin-plugin-gcc-12.12-1.fc39.x86_64 2/65 Verifying : cpp-13.1.1-2.fc39.x86_64 3/65 Verifying : gc-8.2.2-3.fc38.x86_64 4/65 Verifying : gcc-13.1.1-2.fc39.x86_64 5/65 Verifying : gcc-plugin-annobin-13.1.1-2.fc39.x86_64 6/65 Verifying : glibc-devel-2.37.9000-13.fc39.x86_64 7/65 Verifying : glibc-headers-x86-2.37.9000-13.fc39.noarch 8/65 Verifying : groff-base-1.22.4-11.fc38.x86_64 9/65 Verifying : guile22-2.2.7-8.fc39.x86_64 10/65 Verifying : kernel-headers-6.4.0-0.rc5.git0.1.fc39.x86_64 11/65 Verifying : libmpc-1.3.1-2.fc38.x86_64 12/65 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 13/65 Verifying : libunistring-1.1-3.fc38.x86_64 14/65 Verifying : libxcrypt-devel-4.4.35-1.fc39.x86_64 15/65 Verifying : make-1:4.4.1-1.fc39.x86_64 16/65 Verifying : ncurses-6.4-4.20230520.fc39.x86_64 17/65 Verifying : perl-Carp-1.54-1.fc39.noarch 18/65 Verifying : perl-Class-Struct-0.66-497.fc39.noarch 19/65 Verifying : perl-DynaLoader-1.52-497.fc39.x86_64 20/65 Verifying : perl-Encode-4:3.19-493.fc38.x86_64 21/65 Verifying : perl-Errno-1.36-497.fc39.x86_64 22/65 Verifying : perl-Exporter-5.77-490.fc38.noarch 23/65 Verifying : perl-Fcntl-1.15-497.fc39.x86_64 24/65 Verifying : perl-Fedora-VSP-0.001-31.fc38.noarch 25/65 Verifying : perl-File-Basename-2.85-497.fc39.noarch 26/65 Verifying : perl-File-Path-2.18-490.fc38.noarch 27/65 Verifying : perl-File-Temp-1:0.231.100-490.fc38.noarch 28/65 Verifying : perl-File-stat-1.12-497.fc39.noarch 29/65 Verifying : perl-Getopt-Long-1:2.54-2.fc38.noarch 30/65 Verifying : perl-Getopt-Std-1.13-497.fc39.noarch 31/65 Verifying : perl-HTTP-Tiny-0.082-2.fc38.noarch 32/65 Verifying : perl-IO-1.50-497.fc39.x86_64 33/65 Verifying : perl-IPC-Open3-1.22-497.fc39.noarch 34/65 Verifying : perl-MIME-Base64-3.16-490.fc38.x86_64 35/65 Verifying : perl-POSIX-2.03-497.fc39.x86_64 36/65 Verifying : perl-PathTools-3.89-1.fc39.x86_64 37/65 Verifying : perl-Pod-Escapes-1:1.07-490.fc38.noarch 38/65 Verifying : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 39/65 Verifying : perl-Pod-Simple-1:3.45-2.fc39.noarch 40/65 Verifying : perl-Pod-Usage-4:2.03-4.fc38.noarch 41/65 Verifying : perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 42/65 Verifying : perl-SelectSaver-1.02-497.fc39.noarch 43/65 Verifying : perl-Socket-4:2.037-1.fc39.x86_64 44/65 Verifying : perl-Storable-1:3.31-1.fc39.x86_64 45/65 Verifying : perl-Symbol-1.09-497.fc39.noarch 46/65 Verifying : perl-Term-ANSIColor-5.01-491.fc38.noarch 47/65 Verifying : perl-Term-Cap-1.18-1.fc39.noarch 48/65 Verifying : perl-Text-ParseWords-3.31-490.fc38.noarch 49/65 Verifying : perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch 50/65 Verifying : perl-Time-Local-2:1.350-1.fc39.noarch 51/65 Verifying : perl-constant-1.33-492.fc39.noarch 52/65 Verifying : perl-generators-1.16-2.fc38.noarch 53/65 Verifying : perl-if-0.61.000-497.fc39.noarch 54/65 Verifying : perl-interpreter-4:5.36.1-497.fc39.x86_64 55/65 Verifying : perl-libs-4:5.36.1-497.fc39.x86_64 56/65 Verifying : perl-locale-1.10-497.fc39.noarch 57/65 Verifying : perl-macros-4:5.36.1-497.fc39.noarch 58/65 Verifying : perl-mro-1.26-497.fc39.x86_64 59/65 Verifying : perl-overload-1.35-497.fc39.noarch 60/65 Verifying : perl-overloading-0.02-497.fc39.noarch 61/65 Verifying : perl-parent-1:0.241-1.fc39.noarch 62/65 Verifying : perl-podlators-1:5.01-2.fc38.noarch 63/65 Verifying : perl-vars-1.05-497.fc39.noarch 64/65 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 65/65 Installed products updated. Installed: annobin-docs-12.12-1.fc39.noarch annobin-plugin-gcc-12.12-1.fc39.x86_64 cpp-13.1.1-2.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-2.fc39.x86_64 gcc-plugin-annobin-13.1.1-2.fc39.x86_64 glibc-devel-2.37.9000-13.fc39.x86_64 glibc-headers-x86-2.37.9000-13.fc39.noarch groff-base-1.22.4-11.fc38.x86_64 guile22-2.2.7-8.fc39.x86_64 kernel-headers-6.4.0-0.rc5.git0.1.fc39.x86_64 libmpc-1.3.1-2.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libxcrypt-devel-4.4.35-1.fc39.x86_64 make-1:4.4.1-1.fc39.x86_64 ncurses-6.4-4.20230520.fc39.x86_64 perl-Carp-1.54-1.fc39.noarch perl-Class-Struct-0.66-497.fc39.noarch perl-DynaLoader-1.52-497.fc39.x86_64 perl-Encode-4:3.19-493.fc38.x86_64 perl-Errno-1.36-497.fc39.x86_64 perl-Exporter-5.77-490.fc38.noarch perl-Fcntl-1.15-497.fc39.x86_64 perl-Fedora-VSP-0.001-31.fc38.noarch perl-File-Basename-2.85-497.fc39.noarch perl-File-Path-2.18-490.fc38.noarch perl-File-Temp-1:0.231.100-490.fc38.noarch perl-File-stat-1.12-497.fc39.noarch perl-Getopt-Long-1:2.54-2.fc38.noarch perl-Getopt-Std-1.13-497.fc39.noarch perl-HTTP-Tiny-0.082-2.fc38.noarch perl-IO-1.50-497.fc39.x86_64 perl-IPC-Open3-1.22-497.fc39.noarch perl-MIME-Base64-3.16-490.fc38.x86_64 perl-POSIX-2.03-497.fc39.x86_64 perl-PathTools-3.89-1.fc39.x86_64 perl-Pod-Escapes-1:1.07-490.fc38.noarch perl-Pod-Perldoc-3.28.01-491.fc38.noarch perl-Pod-Simple-1:3.45-2.fc39.noarch perl-Pod-Usage-4:2.03-4.fc38.noarch perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 perl-SelectSaver-1.02-497.fc39.noarch perl-Socket-4:2.037-1.fc39.x86_64 perl-Storable-1:3.31-1.fc39.x86_64 perl-Symbol-1.09-497.fc39.noarch perl-Term-ANSIColor-5.01-491.fc38.noarch perl-Term-Cap-1.18-1.fc39.noarch perl-Text-ParseWords-3.31-490.fc38.noarch perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch perl-Time-Local-2:1.350-1.fc39.noarch perl-constant-1.33-492.fc39.noarch perl-generators-1.16-2.fc38.noarch perl-if-0.61.000-497.fc39.noarch perl-interpreter-4:5.36.1-497.fc39.x86_64 perl-libs-4:5.36.1-497.fc39.x86_64 perl-locale-1.10-497.fc39.noarch perl-macros-4:5.36.1-497.fc39.noarch perl-mro-1.26-497.fc39.x86_64 perl-overload-1.35-497.fc39.noarch perl-overloading-0.02-497.fc39.noarch perl-parent-1:0.241-1.fc39.noarch perl-podlators-1:5.01-2.fc38.noarch perl-vars-1.05-497.fc39.noarch zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for bwa-0.7.17-9.fc39.src.rpm Start: rpmbuild bwa-0.7.17-9.fc39.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674000000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kjdgEb + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bwa-0.7.17 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bwa-0.7.17.tar.bz2 + STATUS=0 + '[' 0 -ne 0 ']' + cd bwa-0.7.17 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (bwa-fix-build-gcc10.patch):' Patch #0 (bwa-fix-build-gcc10.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file rle.h + echo 'Patch #1 (bwa-simde.patch):' Patch #1 (bwa-simde.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file ksw.c + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.oeZomo + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bwa-0.7.17 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3' + /usr/bin/make -O -j2 V=1 VERBOSE=1 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3' gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kthread.c -o kthread.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kstring.c -o kstring.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS utils.c -o utils.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS ksw.c -o ksw.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bntseq.c -o bntseq.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt.c -o bwt.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwa.c -o bwa.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem_pair.c -o bwamem_pair.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem_extra.c -o bwamem_extra.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS malloc_wrap.c -o malloc_wrap.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS QSufSort.c -o QSufSort.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt_gen.c -o bwt_gen.o bwt_gen.c: In function 'BWTIncBuildRelativeRank': bwt_gen.c:879:17: warning: variable 'oldInverseSa0RelativeRank' set but not used [-Wunused-but-set-variable] 879 | bgint_t oldInverseSa0RelativeRank = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~~ bwt_gen.c: In function 'BWTIncMergeBwt': bwt_gen.c:953:22: warning: variable 'bitsInWordMinusBitPerChar' set but not used [-Wunused-but-set-variable] 953 | unsigned int bitsInWordMinusBitPerChar; | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS rope.c -o rope.o rope.c: In function 'rope_restore_node': rope.c:282:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | fread(&is_bottom, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ rope.c:283:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 283 | fread(&n, 2, 1, fp); | ^~~~~~~~~~~~~~~~~~~ rope.c:291:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 291 | fread(p[i].c, 8, 6, fp); | ^~~~~~~~~~~~~~~~~~~~~~~ rope.c:292:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 292 | fread(q, 2, 1, fp); | ^~~~~~~~~~~~~~~~~~ rope.c:293:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 293 | fread(q + 1, 1, *q, fp); | ^~~~~~~~~~~~~~~~~~~~~~~ rope.c: In function 'rope_restore': rope.c:312:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 312 | fread(&r->max_nodes, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rope.c:313:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 313 | fread(&r->block_len, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwamem.c -o bwamem.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS rle.c -o rle.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtindex.c -o bwtindex.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS is.c -o is.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwashm.c -o bwashm.o bwashm.c: In function 'bwa_shm_stage': bwashm.c:29:9: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result] 29 | ftruncate(shmid, BWA_CTL_SIZE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bwashm.c:66:9: warning: ignoring return value of 'ftruncate' declared with attribute 'warn_unused_result' [-Wunused-result] 66 | ftruncate(shmid, idx->l_mem); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwaseqio.c -o bwaseqio.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtgap.c -o bwtgap.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwase.c -o bwase.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtaln.c -o bwtaln.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bamlite.c -o bamlite.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS kopen.c -o kopen.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS pemerge.c -o pemerge.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwape.c -o bwape.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS maxk.c -o maxk.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_main.c -o bwtsw2_main.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_aux.c -o bwtsw2_aux.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwt_lite.c -o bwt_lite.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_core.c -o bwtsw2_core.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_chain.c -o bwtsw2_chain.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS fastmap.c -o fastmap.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS main.c -o main.o ar -csru libbwa.a utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o gcc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwtsw2_pair.c -o bwtsw2_pair.o gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o bwape.o kopen.o pemerge.o maxk.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o main.o -o bwa -L. -lbwa -lm -lz -lpthread -lrt bwamem.c:1207:21: warning: type of 'kt_for' does not match original declaration [-Wlto-type-mismatch] 1207 | extern void kt_for(int n_threads, void (*func)(void*,int,int), void *data, int n); | ^ kthread.c:49:6: note: type mismatch in parameter 4 49 | void kt_for(int n_threads, void (*func)(void*,long,int), void *data, long n) | ^ kthread.c:49:6: note: type 'long int' should match type 'int' kthread.c:49:6: note: 'kt_for' was previously declared here kthread.c:49:6: note: code may be misoptimized unless '-fno-strict-aliasing' is used + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.M9xEdO + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bwa-0.7.17 + rm -rf /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/bin + mkdir -p /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/share/bwa/bwakit + mkdir -p /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/share/man/man1 + install -m 0755 bwa /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/bin + install -m 0755 qualfa2fq.pl /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/bin + install -m 0755 xa2multi.pl /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/bin + install -m 0755 bwakit/README.md bwakit/bwa-postalt.js bwakit/run-HLA bwakit/run-bwamem bwakit/run-gen-ref bwakit/typeHLA-selctg.js bwakit/typeHLA.js bwakit/typeHLA.sh /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/share/bwa/bwakit + install -m 0644 bwa.1 /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64//usr/share/man/man1/bwa.1 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.7.17-9.fc39 --unique-debug-suffix -0.7.17-9.fc39.x86_64 --unique-debug-src-base bwa-0.7.17-9.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bwa-0.7.17 extracting debug info from /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/bin/bwa original debug info size: 1348kB, size after compression: 1268kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 1068 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/share/bwa/bwakit/typeHLA.sh from /bin/bash to #!/usr/bin/bash *** WARNING: ./usr/share/bwa/bwakit/typeHLA.js is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/bwa/bwakit/typeHLA-selctg.js is executable but has no shebang, removing executable bit mangling shebang in /usr/share/bwa/bwakit/run-gen-ref from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/share/bwa/bwakit/run-bwamem from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/share/bwa/bwakit/run-HLA from /bin/bash to #!/usr/bin/bash *** WARNING: ./usr/share/bwa/bwakit/bwa-postalt.js is executable but has no shebang, removing executable bit *** WARNING: ./usr/share/bwa/bwakit/README.md is executable but has no shebang, removing executable bit mangling shebang in /usr/bin/xa2multi.pl from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/bin/qualfa2fq.pl from /usr/bin/env perl to #!/usr/bin/perl + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.7Rqq6v + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bwa-0.7.17 + grep '^Version: 0.7.17' + ./bwa Version: 0.7.17-r1188 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bwa-0.7.17-9.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.loJJbM + umask 022 + cd /builddir/build/BUILD + cd bwa-0.7.17 + DOCDIR=/builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/share/doc/bwa + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/share/doc/bwa + cp -pr /builddir/build/BUILD/bwa-0.7.17/COPYING /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/share/doc/bwa + cp -pr /builddir/build/BUILD/bwa-0.7.17/NEWS.md /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/share/doc/bwa + cp -pr /builddir/build/BUILD/bwa-0.7.17/README.md /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/share/doc/bwa + cp -pr /builddir/build/BUILD/bwa-0.7.17/README-alt.md /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64/usr/share/doc/bwa + RPM_EC=0 ++ jobs -p + exit 0 Provides: bwa = 0.7.17-9.fc39 bwa(x86-64) = 0.7.17-9.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) perl(Getopt::Std) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: bwa-debugsource-0.7.17-9.fc39.x86_64 Provides: bwa-debugsource = 0.7.17-9.fc39 bwa-debugsource(x86-64) = 0.7.17-9.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bwa-debuginfo-0.7.17-9.fc39.x86_64 Provides: bwa-debuginfo = 0.7.17-9.fc39 bwa-debuginfo(x86-64) = 0.7.17-9.fc39 debuginfo(build-id) = ddd9593122d5a3371cfd7c24a3762b97a42c37df Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bwa-debugsource(x86-64) = 0.7.17-9.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 Wrote: /builddir/build/RPMS/bwa-0.7.17-9.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bwa-debuginfo-0.7.17-9.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bwa-debugsource-0.7.17-9.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4UaDSn + umask 022 + cd /builddir/build/BUILD + cd bwa-0.7.17 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bwa-0.7.17-9.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.LDA6NT + umask 022 + cd /builddir/build/BUILD + rm -rf bwa-0.7.17 bwa-0.7.17.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild bwa-0.7.17-9.fc39.src.rpm Finish: build phase for bwa-0.7.17-9.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1686591773.353315/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bwa-0.7.17-9.fc39.src.rpm) Config(child) 1 minutes 12 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool