Name:           htscodecs
Version:        1.6.7
Release:        %autorelease
Summary:        Custom compression for CRAM and others

License:        BSD-3-Clause
URL:            https://github.com/samtools/htscodecs
VCS:            git:%{url}.git
Source:         %{url}/archive/v%{version}/%{name}-%{version}.tar.gz

BuildRequires:  autoconf
BuildRequires:  automake
BuildRequires:  gcc
BuildRequires:  libtool
BuildRequires:  make
BuildRequires:  pkgconfig(bzip2)

%description
This package implements the custom CRAM codecs used for "EXTERNAL" block
types.  These consist of two variants of the rANS codec (8-bit and 16-bit
renormalization, with run-length encoding and bit-packing also supported in
the latter), a dynamic arithmetic coder, and custom codecs for name/ID
compression and quality score compression derived from fqzcomp.

%package        devel
Summary:        Development files for htscodecs
Requires:       %{name}%{?_isa} = %{version}-%{release}

%description    devel
This package contains headers and library links for developing applications
that use htscodecs.

%prep
%autosetup

%conf
autoreconf -fi .

%build
# The configure script checks for the ability to compile for various CPU
# extensions; e.g., AVX2.  However, the code checks at runtime that the
# necessary support is available before calling code built for those extensions.
# See the use of CPUID in htscodecs/rANS_static4x16pr.c.
%configure --disable-static
%make_build

%install
%make_install

%check
make check

%files
%doc NEWS.md README.md
%license LICENSE.md
%{_libdir}/libhtscodecs.so.2{,.*}

%files devel
%{_includedir}/htscodecs/
%{_libdir}/libhtscodecs.so

%changelog
%autochangelog