## START: Set by rpmautospec ## (rpmautospec version 0.7.2) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 3; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec %global buildid 295 %global octpkg COPASI %global with_python 1 # Disabled bindings %global with_java 0 %global with_octave 0 %global with_perl 0 %global with_r 0 %global with_mono 0 # # Use QWT6? (Experimental) %global with_qwt6 0 %if 0%{?with_octave} # Exclude .oct files from provides %global __provides_exclude_from ^%{octpkglibdir}/.*\\.oct$ %global octave_ver %(octave-config -p VERSION || echo 0) %endif %global _docdir_fmt %{name} %global blaslib flexiblas %global lapacklib flexiblas ExcludeArch: %{ix86} Name: COPASI Summary: Biochemical network simulator Version: 4.44.%{buildid} Release: %autorelease ## Artistic 2.0 is main license ## GPLv2+ is related to a Mixed Source Licensing Scenario # with 'copasi/randomGenerator/Cmt19937.cpp' file ## GPLv3+ is related to a Mixed Source Licensing Scenario # with 'copasi/function/CEvaluationParser_yacc.cpp' file ## BSD is related to a Mixed Source Licensing Scenario # with 'copasi/randomGenerator/Cmt19937.cpp' file ## Any files with different licenses are not involved License: Artistic-2.0 AND GPL-3.0-or-later AND BSD-3-Clause URL: http://copasi.org/ Source0: https://github.com/copasi/COPASI/archive/Build-%{buildid}/%{name}-Build-%{buildid}.tar.gz Source1: %{name}.appdata.xml %if 0%{?with_qwt6} BuildRequires: qwt-devel BuildRequires: qcustomplot-qt6-devel %endif BuildRequires: qwt-qt5-devel BuildRequires: qwtplot3d-qt5-devel >= 0.3.1a-4 BuildRequires: qt5-qtbase-devel BuildRequires: qt5-qtwebkit-devel BuildRequires: qt5-qtdatavis3d-devel BuildRequires: qcustomplot-qt5-devel BuildRequires: libmml-qt5-devel BuildRequires: freeglut-devel BuildRequires: libsbml-devel BuildRequires: libsedml-devel >= 2:2.0.19-0.1 BuildRequires: libnuml-devel, libnuml-static BuildRequires: libCombine-devel BuildRequires: zipper-devel BuildRequires: libsbw-devel BuildRequires: mesa-libGL-devel BuildRequires: mesa-libGLU-devel BuildRequires: cppunit-devel BuildRequires: libcurl-devel BuildRequires: libxslt-devel BuildRequires: pkgconf-pkg-config BuildRequires: %{blaslib}-devel BuildRequires: crossguid2-devel >= 0:0.2.2 BuildRequires: desktop-file-utils BuildRequires: swig BuildRequires: expat-devel BuildRequires: f2c BuildRequires: flex BuildRequires: cmake, gcc, gcc-c++ BuildRequires: bison BuildRequires: bzip2-devel BuildRequires: ImageMagick BuildRequires: libappstream-glib BuildRequires: minizip-devel %ifarch x86_64 BuildRequires: nativejit-devel %endif %ifnarch s390x BuildRequires: google-cpu_features-devel %endif Requires: %{name}-data = %{version}-%{release} Requires: libsedml%{?_isa} >= 1:0.4.3-3 Obsoletes: R-%{octpkg} < 0:4.25.213-1 Obsoletes: perl-%{octpkg} < 0:4.25.213-1 Obsoletes: %{name}-sharp < 0:4.25.213-1 # This patch sets libraries' installation paths Patch0: %{name}-fix_install_libpaths.patch # This patch sets paths to find QWT5, QTMML, SBW files on Fedora Patch1: %{name}-find_QWT5-QTMML-SBW.patch # This patch sets paths to find QWT6, QTMML, SBW files on Fedora Patch3: %{name}-find_QWT6-QTMML-SBW.patch # This patch sets paths to find QTPLOT3D-QT4 files on Fedora Patch2: %{name}-set_QWTPLOT3D_QT4.patch # This patch fixes executable permissions of CopasiSE and CopasiUI Patch4: %{name}-fix_exe_permissions.patch # This patch sets paths to find QTPLOT3D-QT5 files on Fedora Patch5: %{name}-set_QWTPLOT3D_QT5.patch # This patch sets paths to find libCombine files on Fedora Patch6: %{name}-libCombine_paths.patch # This patch sets paths to find libcroosguid2 files on Fedora Patch7: %{name}-find_crossguid2.patch # This patch forces the use of C++17 standard Patch8: %{name}-use_c++17.patch # This patch sets paths to find libsedml files on Fedora Patch9: %{name}-find_libsedml.patch # This patch sets paths to find libsbw files on Fedora Patch10: %{name}-find_sbw.patch # rhbz#1896407 Patch11: %{name}-porting_to_python310.patch # qwt-6.2 compatibility Patch13: %{name}-qwt62.patch # This patch fixes a missing header request Patch14: %{name}-4.41.283-fix_missing_header.patch # This patch sets path to find qcustomplot-qt5 libraries on Fedora Patch15: %{name}-find_qcp_libs.patch %description COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie's stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI carries out several analyses of the network and its dynamics and has extensive support for parameter estimation and optimization. COPASI provides means to visualize data in customizable plots, histograms and animations of network diagrams. %package gui Summary: The COPASI graphical user interface Requires: %{name}-data = %{version}-%{release} Requires: %{name}-doc = %{version}-%{release} %description gui COPASI is a software application for simulation and analysis of biochemical networks and their dynamics. COPASI is a stand-alone program that supports models in the SBML standard and can simulate their behavior using ODEs or Gillespie's stochastic simulation algorithm; arbitrary discrete events can be included in such simulations. COPASI carries out several analyses of the network and its dynamics and has extensive support for parameter estimation and optimization. COPASI provides means to visualize data in customizable plots, histograms and animations of network diagrams. This package provides the COPASI graphical user interface. %package data Summary: COPASI data files BuildArch: noarch %description data This package provides the COPASI data, example and license files. %if 0%{?with_python} %package -n python3-%{name} Summary: %{name} Python3 Bindings BuildRequires: python3-devel BuildRequires: python3-setuptools Obsoletes: python2-%{name} < 0:4.25.213-1 %{?python_provide:%python_provide python3-%{name}} %description -n python3-%{octpkg} This package provides the libraries to develop applications with COPASI Python3 bindings. %endif %if 0%{?with_java} %package -n java-%{octpkg} Summary: %{name} Java Bindings BuildRequires: java-1.8.0-openjdk-devel Requires: java-headless >= 1:minimal_required_version Requires: javapackages-tools %description -n java-%{octpkg} This package provides the libraries to develop applications with COPASI Java bindings. %endif %if 0%{?with_octave} %package -n octave-%{octpkg} Summary: %{name} Octave Bindings BuildRequires: octave-devel Requires: octave(api) = %{octave_api} Requires(post): octave Requires(postun): octave %description -n octave-%{octpkg} This package provides the libraries to develop applications with COPASI Octave bindings. %endif %if 0%{?with_perl} %package -n perl-%{octpkg} Summary: %{name} Perl Bindings BuildRequires: perl-interpreter BuildRequires: perl-devel BuildRequires: perl-generators BuildRequires: perl(ExtUtils::MakeMaker) %description -n perl-%{octpkg} This package provides the libraries to develop applications with COPASI Perl bindings. %endif %if 0%{?with_r} %package -n R-%{octpkg} Summary: %{name} R Bindings BuildRequires: R-devel, R-core-devel, tex(latex) Requires: R-core%{?_isa} %description -n R-%{octpkg} This package provides the libraries to develop applications with COPASI R bindings. %endif %if 0%{?with_mono} %package sharp Summary: %{name} Mono Bindings BuildRequires: xerces-c-devel, libxml2-devel, expat-devel BuildRequires: mono-core BuildRequires: make %description sharp This package provides the libraries to develop applications with COPASI C# bindings. %endif %package doc Summary: COPASI HTML documentation and examples BuildArch: noarch %description doc COPASI HTML documentation and examples. %prep %autosetup -n %{name}-Build-%{buildid} -N # This an old and obsolete license file rm -f license.txt # Convert to utf-8 for file in `find copasi -type f \( -name "*.cpp" \)`; do iconv -f ISO-8859-1 -t UTF-8 -o $file.new $file && \ touch -r $file $file.new && \ mv $file.new $file done %patch -P 0 -p0 -b .fix_install_libpaths %patch -P 4 -p0 -b .fix_exe_permissions %patch -P 6 -p0 -b .libCombine_paths %patch -P 7 -p0 -b .find_crossguid2 %patch -P 8 -p1 -b .use_c++17 %patch -P 9 -p0 -b .find_libsedml %patch -P 10 -p0 -b .find_sbw %patch -P 13 -p1 -b .qwt %patch -P 14 -p1 -b .backup %patch -P 15 -p1 -b .backup %if 0%{?with_python} %patch -P 11 -p1 -b .porting_to_python310 %endif %if 0%{?with_qwt6} %patch -P 3 -p0 %else %patch -P 1 -p0 %endif # Set Qwt libdir sed -e 's|@@libdir@@|%{_libdir}|g' -i CMakeModules/FindQWT.cmake %patch -P 5 -p0 -b .QWTPLOT3D_QT5 # Set QTPLOT3D-QT5 paths sed -e 's|@@qtplot3d_includedir@@|%{_qt5_headerdir}/qwtplot3d-qt5|g' -i CMakeModules/FindQWTPLOT3D.cmake sed -e 's|@@qtplot3d_libdir@@|%{_qt5_libdir}|g' -i CMakeModules/FindQWTPLOT3D.cmake # Set QtMmlQt5 paths sed -e 's|@@_libmml_includedir@@|%{_qt5_headerdir}/libmml-qt5|g' -i CMakeModules/FindMML.cmake sed -e 's|@@_libmml_libdir@@|%{_qt5_libdir}|g' -i CMakeModules/FindMML.cmake # Exclude obsolete functions # http://tracker.copasi.org/show_bug.cgi?id=2810#c1 sed -i.bak '/double sqrt(doublereal);/d' copasi/optimization/CNL2SOL.cpp sed -i.bak '/double pow_dd(doublereal *, doublereal *);/d' copasi/optimization/CNL2SOL.cpp sed -i.bak '/int s_copy(char *, char *, ftnlen, ftnlen);/d' copasi/optimization/CNL2SOL.cpp sed -i.bak '/double sqrt(doublereal);/d' copasi/odepack++/dc_decsol.cpp sed -i.bak '/double sqrt(doublereal),/d' copasi/odepack++/CRadau5.cpp sed -i.bak '/double pow_dd(doublereal *,/d' copasi/odepack++/CRadau5.cpp sed -i.bak '/C_FLOAT64 d_lg10(C_FLOAT64 *);/d' copasi/optimization/CPraxis.cpp %build export CXXFLAGS="%{build_cxxflags} -I$PWD/copasi/lapack -I$PWD/copasi/CopasiSBW -I%{_includedir}/%{blaslib} %{__global_ldflags}" export LDFLAGS="%{__global_ldflags} -lbz2" %global __cmake_in_source_build copasi %cmake \ -Wno-dev -DCOPASI_OVERRIDE_VERSION:STRING=%{version} \ %if 0%{?with_python} -DENABLE_PYTHON:BOOL=ON \ -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \ -DPYTHON_INCLUDE_DIR:PATH=%{_includedir}/python%{python3_version}%(python3-config --abiflags) \ -DPYTHON_LIBRARY:FILEPATH=%{_libdir}/libpython%{python3_version}%(python3-config --abiflags).so \ %else -DENABLE_PYTHON:BOOL=OFF \ %endif %if 0%{?with_java} -DENABLE_JAVA:BOOL=ON \ -DBUILD_JAVA_EXAMPLES:BOOL=OFF \ %endif %if 0%{?with_octave} -DENABLE_OCTAVE:BOOL=ON \ -DOCTAVE_INCLUDE_DIR:PATH=%{_includedir}/octave-%{octave_ver} \ -DOCTAVE_OCTINTERP_LIBRARY:FILEPATH=%{_libdir}/octave/%{octave_ver}/liboctinterp.so \ -DOCTAVE_OCTAVE_LIBRARY:FILEPATH=%{_libdir}/octave/%{octave_ver}/liboctave.so \ %endif %if 0%{?with_perl} -DENABLE_PERL:BOOL=ON \ %endif %if 0%{?with_r} -DENABLE_R:BOOL=ON \ -DR_INCLUDE_DIRS:PATH=%{_includedir}/R \ %endif %if 0%{?with_mono} -DENABLE_CSHARP:BOOL=ON \ -DBUILD_CS_EXAMPLES:BOOL=OFF \ %endif -DCSHARP_COMPILER:FILEPATH=%{_bindir}/mcs \ %if 0%{?with_qwt6} -DQWT_VERSION_STRING:STRING="%(pkg-config --modversion qwt)" \ %endif -DENABLE_JIT:BOOL=OFF \ -DSELECT_QT=Qt5 \ -DCOPASI_USE_RAPTOR:BOOL=OFF \ -DSITE:STRING=fedora -DF2C_INTEGER=int -DF2C_LOGICAL=long \ -DCMAKE_CXX_FLAGS_RELEASE:STRING="%{build_cxxflags} -I$PWD/copasi/lapack -I$PWD/copasi/CopasiSBW -I%{_includedir}/%{blaslib} %{__global_ldflags} -DNDEBUG" \ -DCOPASI_INSTALL_C_API=OFF -DCombine_DIR:PATH=%{_libdir}/cmake \ -DCMAKE_SHARED_LINKER_FLAGS:STRING="%{__global_ldflags} -pthread" \ -DCMAKE_EXE_LINKER_FLAGS:STRING="%{__global_ldflags} -pthread" \ -DQT_QMAKE_EXECUTABLE:FILEPATH=%{_bindir}/qmake-qt5 \ -DQWT_VERSION_STRING:STRING="%(pkg-config --modversion Qt5Qwt6)" \ -DQWT_LIBRARY:FILEPATH=%{_qt5_libdir}/libqwt-qt5.so \ -DQWT_INCLUDE_DIR:PATH=%{_qt5_headerdir}/qwt \ -DBUILD_GUI:BOOL=ON -DBUILD_COPASISBW:BOOL=ON -DENABLE_MML:BOOL=ON -DENABLE_USE_SBMLUNIT=ON \ -DMML_INCLUDE_DIR:PATH=%{_qt5_headerdir}/libmml-qt5 -DMML_LIBRARY:FILEPATH=%{_qt5_libdir}/libmml.so \ -DENABLE_SBW_INTEGRATION=ON -DBUILD_CXX_EXAMPLES=OFF \ -DENABLE_COPASI_BANDED_GRAPH:BOOL=ON -DENABLE_COPASI_SEDML:BOOL=ON \ -DENABLE_COPASI_NONLIN_DYN_OSCILLATION:BOOL=ON -DENABLE_COPASI_EXTUNIT:BOOL=ON \ -DCOPASI_OVERWRITE_USE_LAPACK:BOOL=ON -DNO_BLAS_WRAP:BOOL=ON -DBLA_VENDOR=Generic \ -DBLAS_blas_LIBRARY:FILEPATH=%{_libdir}/lib%{blaslib}.so \ -DLAPACK_lapack_LIBRARY:FILEPATH=%{_libdir}/lib%{lapacklib}.so \ -DCROSSGUID_INCLUDE_DIR:PATH=%{_includedir}/crossguid2 \ -DENABLE_COPASI_PARAMETERFITTING_RESIDUAL_SCALING:BOOL=ON \ -DENABLE_WITH_MERGEMODEL:BOOL=ON -DENABLE_USE_MATH_CONTAINER:BOOL=ON \ -DLIBSBML_INCLUDE_DIR:PATH=%{_includedir}/sbml -DLIBSBML_SHARED:BOOL=ON -DLIBSBML_LIBRARY:FILEPATH=%{_libdir}/libsbml.so \ -DLIBNUML_LIBRARY:FILEPATH=%{_libdir}/libnuml.so -DEXTRA_INCLUDE_DIRS:STRING=-I%{_includedir}/numl \ -DEXPAT_LIBRARY:FILEPATH=%{_libdir}/libexpat.so -DEXPAT_INCLUDE_DIR:PATH=%{_includedir} \ -DF2C_INCLUDE_DIR:PATH=%{_includedir} \ -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=%{_libdir} \ -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} -DENABLE_GPROF:BOOL=OFF \ -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON \ -DENABLE_FLEX_BISON:BOOL=ON -DBISON_EXECUTABLE:FILEPATH=%{_bindir}/bison \ -DPREFER_STATIC:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCOPASI_USE_QCUSTOMPLOT:BOOL=ON %cmake_build %install %cmake_install # Remove directory of examples %if 0%{?with_python} rm -rf $RPM_BUILD_ROOT%{python3_sitearch}/copasi/examples %endif # For R library only %if 0%{?with_r} mkdir -p $RPM_BUILD_ROOT%{_libdir}/R/library %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library build/copasi/bindings/R/%{name}_*.tar.gz test -d %{octpkg}/src && (cd %{octpkg}/src; rm -f *.o *.so) rm -rf $RPM_BUILD_ROOT%{_libdir}/R/library/%{octpkg}/R.css chmod a+x $RPM_BUILD_ROOT%{_libdir}/R/library/%{octpkg}/libs/COPASI.so %endif %if 0%{?with_octave} mkdir -p $RPM_BUILD_ROOT%{octpkgdir}/packinfo install -pm 644 copasi/ArtisticLicense.txt $RPM_BUILD_ROOT%{octpkgdir}/packinfo %endif # Install .xpm icon files install -pm 644 copasi/UI/icons/Copasi48-Alpha.xpm $RPM_BUILD_ROOT%{_datadir}/icons/copasi/icons # Make a .desktop file mkdir -p $RPM_BUILD_ROOT%{_datadir}/applications cat > $RPM_BUILD_ROOT%{_datadir}/applications/%{name}.desktop < - 4.44.295-3 - Remove obsolete patch file * Wed Aug 21 2024 Antonio Trande - 4.44.295-2 - Drop obsolete patch * Wed Aug 21 2024 Antonio Trande - 4.44.295-1 - Release 4.44.295 | Fix RHBZ#2300543| Fix RHBZ#2272655 * Wed Jul 17 2024 Fedora Release Engineering - 4.42.284-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Sun Feb 04 2024 Antonio Trande - 4.42.284-7 - Exclude ix86 architectures * Mon Jan 22 2024 Fedora Release Engineering - 4.42.284-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Antonio Trande - 4.42.284-5 - Patched for swig-4.2.0 (rhbz#2259156) * Fri Jan 19 2024 Fedora Release Engineering - 4.42.284-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Thu Jan 18 2024 Fedora Release Engineering - 4.42.284-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Sat Dec 02 2023 Antonio Trande - 4.42.284-2 - Fix patch * Sat Dec 02 2023 Antonio Trande - 4.42.284-1 - Release 4.42 build-284 * Thu Nov 30 2023 Antonio Trande - 4.41.283-1 - Release 4.41 build-283| Add COPASI_USE_QCUSTOMPLOT cmake option (upstream bug #3202) * Wed Jul 19 2023 Fedora Release Engineering - 4.40.278-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Tue Jun 13 2023 Python Maint - 4.40.278-3 - Rebuilt for Python 3.12 * Thu Jun 01 2023 Antonio Trande - 4.40.278-2 - Fix Changelog * Thu Jun 01 2023 Antonio Trande - 4.40.278-1 - Release 4.39 build-278 * Fri Feb 03 2023 Antonio Trande - 4.39.272-1 - Release 4.39 build-272 * Wed Jan 18 2023 Fedora Release Engineering - 4.38.268-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Jan 13 2023 Jitka Plesnikova - 4.38.268-5 - Remove perl(MODULE_COMPAT), it will be replaced by generators * Thu Dec 22 2022 Sandro Mani - 4.38.268-4 - Add patch to fix build against qwt-6.2 * Wed Dec 21 2022 Sandro Mani - 4.38.268-3 - Rebuild (qwt) * Sat Dec 03 2022 Antonio Trande - 4.38.268-2 - Release 4.38 build-268| Upload source archive * Sat Dec 03 2022 Antonio Trande - 4.38.268-1 - Release 4.38 build-268 * Thu Oct 06 2022 Antonio Trande - 4.37.264-4 - Release 4.37 build-264 | Remove patch for swig * Thu Oct 06 2022 Antonio Trande - 4.37.264-3 - Release 4.37 build-264 | Remove obsolete patch file * Thu Oct 06 2022 Antonio Trande - 4.37.264-2 - Release 4.37 build-264 | Remove obsolete patch * Thu Oct 06 2022 Antonio Trande - 4.37.264-1 - Release 4.37 build-264 * Tue Oct 04 2022 Jitka Plesnikova - 4.36.260-3 - Applied the patch for rhbz#2128029 * Fri Sep 23 2022 Antonio Trande - 4.36.260-2 - Patched for rhbz#2128029 * Thu Sep 15 2022 Antonio Trande - 4.36.260-1 - Release 4.36 build-260 * Wed Jul 20 2022 Fedora Release Engineering - 4.35.258-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Mon Jun 13 2022 Python Maint - 4.35.258-6 - Rebuilt for Python 3.11 * Wed May 11 2022 Antonio Trande - 4.35.258-5 - Rebuild for libCombine-0.2.17 * Sun Mar 20 2022 Antonio Trande - 4.35.258-4 - Release 4.35 build-258| Add libnuml-static * Sat Mar 19 2022 Antonio Trande - 4.35.258-3 - Release 4.35 build-258| Drop GCC-12 patch * Sat Mar 19 2022 Antonio Trande - 4.35.258-2 - Release 4.35 build-258| Update Python3.10 patch * Sat Mar 19 2022 Antonio Trande - 4.35.258-1 - Release 4.35 build-258 * Sat Mar 05 2022 Antonio Trande - 4.34.251-8 - Fix rhbz#2060860 /3 * Sat Mar 05 2022 Antonio Trande - 4.34.251-7 - Fix rhbz#2060860 (workaround) * Sat Mar 05 2022 Antonio Trande - 4.34.251-6 - Fix rhbz#2060860 * Wed Feb 09 2022 Antonio Trande - 4.34.251-5 - JIT disabled in Fedora 36 (rhbz#2052707)| Fix patch #8 * Wed Feb 09 2022 Antonio Trande - 4.34.251-4 - JIT disabled in Fedora 36 (rhbz#2052707) * Sun Jan 30 2022 Antonio Trande - 4.34.251-3 - Patched for GCC-12 * Wed Jan 19 2022 Fedora Release Engineering - 4.34.251-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Fri Aug 13 2021 Antonio Trande - 4.34.251-1 - Release 4.34 build-251 * Wed Jul 21 2021 Fedora Release Engineering - 4.33.246-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 4.33.246-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 25 2021 Antonio Trande - 4.33.246-2 - Rebuild for qwtplot3d-qt5 * Sun Jun 20 2021 Antonio Trande - 4.33.246-1 - Release 4.33 build-246 * Fri Jun 04 2021 Python Maint - 4.31.243-3 - Rebuilt for Python 3.10 * Fri May 14 2021 Antonio Trande - 4.31.243-2 - Release 4.31 build-243| Fix BR dependencies * Fri May 14 2021 Antonio Trande - 4.31.243-1 - Release 4.31 build-243 * Thu Mar 18 2021 Antonio Trande <3974791-anto.trande@users.noreply.gitlab.com> - 4.30.240-1 - Release 4.30 build-240 * Mon Jan 25 2021 Fedora Release Engineering - 4.29.228-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Thu Dec 17 2020 Tom Stellard - 4.29.228-13 - Add BuildRequires: make * Thu Nov 12 2020 Antonio T - 4.29.228-12 - Porting to Python-3.10 * Thu Aug 13 2020 sagitter - 4.29.228-11 - Change build directory * Wed Aug 12 2020 sagitter - 4.29.228-10 - Fix lapack include directory outside the source build/2 * Wed Aug 12 2020 sagitter - 4.29.228-9 - Fix lapack include directory outside the source build * Wed Aug 12 2020 sagitter - 4.29.228-8 - Fix include directory outside the source build * Wed Aug 12 2020 sagitter - 4.29.228-7 - Fix lapack * Wed Aug 12 2020 sagitter - 4.29.228-6 - Make a build dir * Wed Aug 12 2020 sagitter - 4.29.228-5 - Fix __cmake_in_source_build macro * Wed Aug 12 2020 sagitter - 4.29.228-4 - Define __cmake_in_source_build in Fedora < 33 * Wed Aug 12 2020 sagitter - 4.29.228-3 - use flexiblas on Fedora 33+ * Wed Aug 12 2020 sagitter - 4.29.228-2 - Add COPASI.rpmlintrc * Wed Aug 12 2020 sagitter - 4.29.228-1 - Release 4.29 build-228 * Mon Jul 27 2020 Fedora Release Engineering - 4.28.226-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Sat Jul 25 2020 Iñaki Úcar - 4.28.226-3 - https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager * Wed Jun 24 2020 sagitter - 4.28.226-2 - BuildRequires python-setuptools explicitly * Mon Jun 15 2020 sagitter - 4.28.226-1 - Release 4.28 build-226 * Tue May 26 2020 Miro Hrončok - 4.27.217-6 - Rebuilt for Python 3.9 * Fri May 15 2020 sagitter - 4.27.217-5 - Rebuild for zipper-1.0.1/libCombine-0.2.7 * Tue Jan 28 2020 Fedora Release Engineering - 4.27.217-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Sat Dec 14 2019 Richard Shaw - 4.27.217-3 - Rebuilt for qt5-qtdatavis3d 5.13.2. * Sat Sep 14 2019 sagitter - 4.27.217-2 - Push COPASI.rpmlintrc * Sat Sep 14 2019 sagitter - 4.27.217-1 - Release 4.27 build-217 * Mon Aug 19 2019 Miro Hrončok - 4.25.213-3 - Rebuilt for Python 3.8 * Thu Aug 01 2019 sagitter - 4.25.213-2 - Reintroduce COPASI.rpmlintrc * Thu Aug 01 2019 sagitter - 4.25.213-1 - Release 4.25 build-213 * Wed Jun 19 2019 Tim Landscheidt - 4.25.207-8 - Do not list Git-tracked COPASI.rpmlintrc as source * Tue Jun 18 2019 Orion Poplawski - 4.25.207-7 - Rebuild for octave 5.1 * Sat Jun 01 2019 Jitka Plesnikova - 4.25.207-6 - Perl 5.30 rebuild * Tue May 21 2019 sagitter - 4.25.207-5 - Fix python3-config commands again * Tue May 21 2019 sagitter - 4.25.207-4 - Fix python3-config commands * Tue May 21 2019 sagitter - 4.25.207-3 - Use Python3 abiflags * Sun May 05 2019 sagitter - 4.25.207-2 - Rebuild for libsbml-5.18.0 * Mon Mar 25 2019 sagitter - 4.25.207-1 - Release 4.25 build-207|Use openblas always * Fri Mar 08 2019 sagitter - 4.24.197-9 - Obsolete COPASI-sharp on fedora 30+/pp64* (rhbz#1588734,#1686738) * Fri Mar 08 2019 sagitter - 4.24.197-8 - Change mono arches on fedora 30+ * Fri Mar 08 2019 sagitter - 4.24.197-7 - Exclude mono builds on fedora 30+/pp64* (rhbz#1588734,#1686738) * Thu Jan 31 2019 Fedora Release Engineering - 4.24.197-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Nov 15 2018 Orion Poplawski - 4.24.197-5 - Rebuild for octave 4.4 * Thu Sep 27 2018 sagitter - 4.24.197-4 - Bundle minizip on fedora 30+ (rhbz#1632172) (upstream bug #466) * Tue Sep 04 2018 Patrik Novotný - 4.24.197-3 - Update dependency to minizip-compat(-devel) * Sun Aug 05 2018 sagitter - 4.24.197-2 - Rebuild for libsbw-2.12.2 * Wed Aug 01 2018 sagitter - 4.24.197-1 - Release 4.24 build-197 * Thu Jul 12 2018 Fedora Release Engineering - 4.23.184-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Tue Jul 03 2018 Petr Písař - 4.23.184-15 - Perl 5.28 rebuild * Fri Jun 29 2018 Jitka Plesnikova - 4.23.184-14 - Perl 5.28 rebuild * Tue Jun 19 2018 Miro Hrončok - 4.23.184-13 - Rebuilt for Python 3.7 * Wed Jun 06 2018 sagitter - 4.23.184-12 - Rebuild for libsbml-5.17.0 * Mon Jun 04 2018 sagitter - 4.23.184-11 - Upstream patches * Sat Jun 02 2018 sagitter - 4.23.184-10 - Patched for Qt-5.11.0 * Fri Jun 01 2018 sagitter - 4.23.184-9 - Remove directory of examples * Fri Jun 01 2018 sagitter - 4.23.184-8 - Fix Python interpreter again * Thu May 31 2018 sagitter - 4.23.184-7 - Use always Qt5 * Fri May 18 2018 sagitter - 4.23.184-6 - Fix Python interpreter * Thu May 17 2018 sagitter - 4.23.184-5 - Rebuild with Qt5 * Wed May 16 2018 Tom Callaway - 4.23.184-4 - rebuild for R 3.5.0 * Wed May 16 2018 sagitter - 4.23.184-3 - Now built with Qt5 * Thu May 03 2018 sagitter - 4.23.184-2 - Disable java/octave bindings * Wed May 02 2018 sagitter - 4.23.184-1 - Update to version 4.23 -build 184 * Fri Feb 16 2018 sagitter - 4.22.170-9 - Disable Octave binding on ARM ('virtual memory exhausted' issue) * Thu Feb 15 2018 sagitter - 4.22.170-8 - Use Make job-1 on arm * Thu Feb 15 2018 sagitter - 4.22.170-7 - Rebuild for libsbml-5.16.0 * Wed Feb 07 2018 Fedora Release Engineering - 4.22.170-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Sun Dec 17 2017 sagitter - 4.22.170-5 - Appdata file moved into metainfo data directory * Mon Dec 11 2017 sagitter - 4.22.170-4 - Rebuild for libsbml-5.16.0 * Sat Nov 25 2017 sagitter - 4.22.170-3 - Additional screeshots (bz#1517299) * Sat Nov 25 2017 sagitter - 4.22.170-2 - Appdata file edited (bz#1517299) * Sat Nov 18 2017 sagitter - 4.22.170-1 - Update to version 4.22 -build 170 * Thu Oct 12 2017 sagitter - 4.21.166-4 - Remove old Obsoletes * Wed Oct 11 2017 sagitter - 4.21.166-3 - BuildRequire libnuml * Wed Oct 11 2017 sagitter - 4.21.166-2 - Fix BR packages * Wed Oct 11 2017 sagitter - 4.21.166-1 - Update to version 4.21 -build 166 * Fri Sep 22 2017 sagitter - 4.20.165-1 - Update to version 4.20 -build 165 * Tue Sep 05 2017 sagitter - 4.20.159-1 - Update to version 4.20 -build 159 * Wed Aug 16 2017 sagitter - 4.20.158-7 - Fix Python interpreter * Fri Aug 11 2017 sagitter - 4.20.158-6 - Remove blas option * Fri Aug 11 2017 sagitter - 4.20.158-5 - Fix wrong character in the appadata file * Mon Aug 07 2017 sagitter - 4.20.158-4 - Reintroduce command to disable generation of the debuginfo package on s390x (bz#1478284) * Tue Aug 01 2017 sagitter - 4.20.158-3 - Fix macros * Tue Aug 01 2017 sagitter - 4.20.158-2 - New conditional macro to control stripping * Mon Jul 31 2017 sagitter - 4.20.158-1 - Update to version 4.20 -build 158 * Wed Jul 26 2017 Fedora Release Engineering - 4.19.156-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Wed Jul 12 2017 Petr Písař - 4.19.156-2 - perl dependency renamed to perl-interpreter * Tue Jul 11 2017 sagitter - 4.19.156-1 - Update to version 4.19 -build 156 * Sun Jul 02 2017 sagitter - 4.19.155-1 - Update to version 4.19 -build 155 (fix upstream bug #2428) * Sun Jun 04 2017 Jitka Plesnikova - 4.19.150-3 - Perl 5.26 rebuild * Fri Jun 02 2017 sagitter - 4.19.150-2 - Fix Patches #0,#3 * Fri Jun 02 2017 sagitter - 4.19.150-1 - Update to version 4.19 -build 150 (fix upstream bug #2415) * Sat Apr 15 2017 sagitter - 4.19.148-1 - Update to version 4.19 -build 148 (fix upstream bug #2403) * Fri Apr 14 2017 sagitter - 4.19.147-3 - Rebuild for libsbml-5.15.0 * Thu Apr 06 2017 sagitter - 4.19.147-2 - Strip executable binary/library files * Sun Mar 26 2017 sagitter - 4.19.147-1 - Update to version 4.19 -build 147 * Sat Mar 04 2017 sagitter - 4.19.146-1 - Update to version 4.19 -build 146 * Fri Feb 10 2017 Fedora Release Engineering - 4.19.143-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Sat Feb 04 2017 sagitter - 4.19.143-1 - Update to version 4.19 -build 143 * Wed Jan 18 2017 sagitter - 4.19.141-1 - Update to version 4.19 -build 141 * Thu Dec 22 2016 sagitter - 4.18.138-1 - Update to build 138 (bug fixes from upstream) * Mon Dec 19 2016 Miro Hrončok - 4.18.136-7 - Rebuild for Python 3.6 * Tue Dec 13 2016 sagitter - 4.18.136-6 - Exclude debuginfo package * Tue Dec 13 2016 sagitter - 4.18.136-5 - Exclude Octave-4.2 binding (upstream bug #2342) * Wed Dec 07 2016 Orion Poplawski - 4.18.136-4 - Rebuild for octave 4.2 * Tue Nov 29 2016 sagitter - 4.18.136-3 - Set COPASI version for Octave lib path * Tue Nov 29 2016 sagitter - 4.18.136-2 - Fix Octave lib path * Tue Nov 29 2016 sagitter - 4.18.136-1 - Update to build-136 (stable release) * Tue Nov 22 2016 sagitter - 4.17-15 - Update to build-135 (stable release) * Thu Nov 17 2016 sagitter - 4.17-14 - Update to build-134 (fix bugs 2324 2327) * Sun Nov 06 2016 sagitter - 4.17-13 - Fix memory issue on s390 * Fri Nov 04 2016 sagitter - 4.17-12 - Disable generation of debuginfo package on s390 * Thu Nov 03 2016 sagitter - 4.17-11 - Update to build-131 * Mon Oct 17 2016 sagitter - 4.17-10 - Update to build-128 * Sun Sep 11 2016 sagitter - 4.17-9 - Update to build-123 * Tue Aug 16 2016 sagitter - 4.17-8 - Rebuild for Python 3.5.2 * Wed Jul 27 2016 sagitter - 4.17-7 - Update to build-119 * Tue Jul 19 2016 Fedora Release Engineering - 4.17-6 - https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_ Packages * Fri Jun 24 2016 Petr Písař - 4.17-5 - Mandatory Perl build-requires added * Tue May 17 2016 Jitka Plesnikova - 4.17-4 - Perl 5.24 rebuild * Thu Apr 21 2016 sagitter - 4.17-3 - Rebuild for libSBML 5.13.0 * Sun Feb 07 2016 sagitter - 4.17-2 - Exclude Octave binding on s390 * Wed Feb 03 2016 sagitter - 4.17-1 - Update to commit #7b0f05 * Wed Feb 03 2016 Dennis Gilmore - 4.16-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Fri Jan 29 2016 sagitter - 4.16-8 - Renamed Python2 package * Sun Dec 13 2015 sagitter - 4.16-7 - Rebuild with GCC-5.3 * Sat Nov 14 2015 sagitter - 4.16-6 - Rebuilt for libsbml-5.12.0 and Python3.5 * Tue Nov 10 2015 Peter Robinson - 4.16-5 - Rebuilt for https://fedoraproject.org/wiki/Changes/python3.5 * Fri Nov 06 2015 sagitter - 4.16-4 - Hardened rebuild on Fedora <23 * Fri Nov 06 2015 sagitter - 4.16-3 - Rebuild with -pie in Fedora >22 * Sun Sep 20 2015 sagitter - 4.16-2 - Rebuild for libsedml update * Wed Aug 26 2015 sagitter - 4.16-1 - New package (BZ#1231427) ## END: Generated by rpmautospec