%global git 0 %global commit f74064d62090da45a28225881008b05798703d1c %global shortcommit %(c=%{commit}; echo ${c:0:7}) Name: espresso Version: 4.0.1 Release: 1%{?dist} Summary: Extensible Simulation Package for Research on Soft matter License: GPLv3+ URL: http://espressomd.org %if %{git} Source0: https://github.com/%{name}md/%{name}/archive/%{commit}/%{name}-%{commit}.tar.gz %else Source0: https://github.com/%{name}md/%{name}/releases/download/%{version}/%{name}-%{version}.tar.gz %endif BuildRequires: gcc-c++ %if 0%{?rhel} BuildRequires: cmake3 >= 3.0 BuildRequires: python%{python3_pkgversion}-Cython BuildRequires: python%{python3_pkgversion}-setuptools %global cython /usr/bin/cython%{python3_version} # no boost-mpi* for ppc64le on epel7 ExcludeArch: ppc64le %else BuildRequires: cmake >= 3.0 %global cmake3 %{cmake} BuildRequires: /usr/bin/cython %global cython /usr/bin/cython %endif BuildRequires: fftw-devel BuildRequires: python%{python3_pkgversion}-numpy BuildRequires: python%{python3_pkgversion}-devel BuildRequires: boost-devel BuildRequires: hdf5-devel BuildRequires: gsl-devel BuildRequires: boost-devel BuildRequires: mpich-devel BuildRequires: boost-mpich-devel BuildRequires: openmpi-devel BuildRequires: boost-openmpi-devel Requires: python%{python3_pkgversion}-numpy Requires: %{name}-common = %{version}-%{release} %description ESPResSo can perform Molecular Dynamics simulations of bead-spring models in various ensembles ((N,V,E), (N,V,T), and (N,p,T)). ESPResSo contains a number of advanced algorithms, e.g. * DPD thermostat (for hydrodynamics) * P3M, MMM2D, MMM1D, ELC for electrostatic interactions * Lattice-Boltzmann for hydrodynamics %package common Summary: Common files for %{name} packages BuildArch: noarch Requires: %{name}-common = %{version}-%{release} %description common ESPResSo can perform Molecular Dynamics simulations of bead-spring models in various ensembles ((N,V,E), (N,V,T), and (N,p,T)). ESPResSo contains a number of advanced algorithms, e.g. * DPD thermostat (for hydrodynamics) * P3M, MMM2D, MMM1D, ELC for electrostatic interactions * Lattice-Boltzmann for hydrodynamics This package contains the license file and data files shared between the sub-packages of %{name}. %package devel Summary: Development package for %{name} packages Requires: python%{python3_pkgversion}-%{name}-openmpi = %{version}-%{release} Requires: python%{python3_pkgversion}-%{name}-mpich = %{version}-%{release} %description devel ESPResSo can perform Molecular Dynamics simulations of bead-spring models in various ensembles ((N,V,E), (N,V,T), and (N,p,T)). ESPResSo contains a number of advanced algorithms, e.g. * DPD thermostat (for hydrodynamics) * P3M, MMM2D, MMM1D, ELC for electrostatic interactions * Lattice-Boltzmann for hydrodynamics This package contains the development libraries of %{name}. %package -n python%{python3_pkgversion}-%{name}-openmpi Requires: %{name}-common = %{version}-%{release} Summary: Extensible Simulation Package for Research on Soft matter Provides: %{name}-openmpi = %{version}-%{release} Obsoletes: %{name}-openmpi < 3.3.0-12 %description -n python%{python3_pkgversion}-%{name}-openmpi ESPResSo can perform Molecular Dynamics simulations of bead-spring models in various ensembles ((N,V,E), (N,V,T), and (N,p,T)). ESPResSo contains a number of advanced algorithms, e.g. * DPD thermostat (for hydrodynamics) * P3M, MMM2D, MMM1D, ELC for electrostatic interactions * Lattice-Boltzmann for hydrodynamics This package contains %{name} compiled against Open MPI. %package -n python%{python3_pkgversion}-%{name}-mpich Requires: %{name}-common = %{version}-%{release} Summary: Extensible Simulation Package for Research on Soft matter Provides: %{name}-mpich2 = %{version}-%{release} Obsoletes: %{name}-mpich2 < 3.1.1-3 Provides: %{name}-mpich = %{version}-%{release} Obsoletes: %{name}-mpich < 3.3.0-12 %description -n python%{python3_pkgversion}-%{name}-mpich ESPResSo can perform Molecular Dynamics simulations of bead-spring models in various ensembles ((N,V,E), (N,V,T), and (N,p,T)). ESPResSo contains a number of advanced algorithms, e.g. * DPD thermostat (for hydrodynamics) * P3M, MMM2D, MMM1D, ELC for electrostatic interactions * Lattice-Boltzmann for hydrodynamics This package contains %{name} compiled against MPICH2. %prep %if %{git} %setup -q -n espresso-%{commit} %else %setup -q %endif mkdir openmpi_build mpich_build sed -i 's/1.67/1.66/' CMakeLists.txt %build %global defopts \\\ -DWITH_PYTHON=ON \\\ -DPYTHON_EXECUTABLE=%{__python3} \\\ -DWITH_TESTS=ON \\\ -DCMAKE_SKIP_RPATH=ON \\\ -DINSTALL_PYPRESSO=OFF \\\ -DCYTHON_EXECUTABLE=%{cython} #save some memory using -j1 %define _smp_mflags -j1 # Build OpenMPI version %{_openmpi_load} pushd openmpi_build %{cmake3} \ %{defopts} \ -DLIBDIR=${MPI_LIB} \ -DPYTHON_INSTDIR=%{python3_sitearch}/openmpi \ .. %make_build popd %{_openmpi_unload} # Build mpich version %{_mpich_load} pushd mpich_build %{cmake3} \ %{defopts} \ -DLIBDIR=${MPI_LIB} \ -DPYTHON_INSTDIR=%{python3_sitearch}/mpich \ .. %make_build popd %{_mpich_unload} %install # first install mpi files and move around because MPI_SUFFIX above doesn't # work yet (will be fixed in a new version) %{_openmpi_load} pushd openmpi_build %make_install popd %{_openmpi_unload} %{_mpich_load} pushd mpich_build %make_install popd %{_mpich_unload} find %{buildroot}%{_prefix} -name "*.so" -exec chmod +x {} \; find %{buildroot}%{_prefix} -name "gen_pxiconfig" -exec chmod +x {} \; %check # https://github.com/espressomd/espresso/issues/2468 %if 0%{?fedora} <= 29 %ifarch ppc64 ppc64le aarch64 %global testargs ARGS='-E npt' %endif # old Boost.MPI versions contain a use-after-free bug that seems to only cause crashes on 32-bit plattform # remove after boost>=1.67 is available %ifarch i686 %arm %global testargs ARGS='-E .' %endif %endif %{_openmpi_load} pushd openmpi_build LD_LIBRARY_PATH=${MPI_LIB}:%{buildroot}${MPI_LIB} make check CTEST_OUTPUT_ON_FAILURE=1 %{?testargs:%{testargs}} popd %{_openmpi_unload} %{_mpich_load} pushd mpich_build LD_LIBRARY_PATH=${MPI_LIB}:%{buildroot}${MPI_LIB} make check CTEST_OUTPUT_ON_FAILURE=1 %{?testargs:%{testargs}} popd %{_mpich_unload} %files common %doc AUTHORS README NEWS ChangeLog %license COPYING %files devel %{_libdir}/*/lib/lib*.so %files -n python%{python3_pkgversion}-%{name}-openmpi %{_libdir}/openmpi/lib/lib*.so.* %{python3_sitearch}/openmpi/%{name}md %files -n python%{python3_pkgversion}-%{name}-mpich %{_libdir}/mpich/lib/lib*.so.* %{python3_sitearch}/mpich/%{name}md %changelog * Fri Jan 25 2019 Christoph Junghans - 4.0.1-1 - version bump to 4.0.1 * Fri Sep 07 2018 Christoph Junghans - 4.0.0-1 - version bump to 4.0.0 (bug #1625379) - move to python3 * Fri Jul 13 2018 Fedora Release Engineering - 4.0-0.12.20180203gitf74064d - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Tue Feb 06 2018 Iryna Shcherbina - 4.0-0.11.20180203gitf74064d - Update Python 2 dependency declarations to new packaging standards (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3) * Sun Feb 04 2018 Christoph Junghans - 4.0-0.10.20170220git7a9ac74 - added 1830.patch to fix install (missing libEspressoConfig) * Sat Feb 03 2018 Christoph Junghans - 4.0-0.9.20170220git7a9ac74 - Bump to version 4.0 git version f74064d - Drop 1056.patch, got merged upstream * Wed Aug 02 2017 Fedora Release Engineering - 4.0-0.8.20170228git8a021f5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 4.0-0.7.20170228git8a021f5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Wed Jul 19 2017 Jonathan Wakely - 4.0-0.6.20170228git8a021f5 - Rebuilt for s390x binutils bug * Tue Jul 18 2017 Jonathan Wakely - 4.0-0.5.20170228git8a021f5 - Rebuilt for Boost 1.64 * Sun Mar 12 2017 Peter Robinson 4.0-0.4.20170228git8a021f5 - Drop ExcludeArch as boost-mpi is now built on ppc64le * Sun Mar 05 2017 Christoph Junghans - 4.0-0.3.20170228git8a021f5 - Dropped 1042.patch, merged upstream - Add 1056.patch to fix install * Sat Feb 25 2017 Christoph Junghans - 4.0-0.2.20170220git7a9ac74 - ExcludeArch: ppc64le due to missing boost-mpi * Thu Feb 16 2017 Christoph Junghans - 4.0-0.1.20170220git7a9ac74 - Bump to version 4.0 git version - Drop cypthon patch, incl. upstream - Add 1042.patch from upstream * Fri Feb 10 2017 Fedora Release Engineering - 3.3.0-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Fri Oct 21 2016 Orion Poplawski - 3.3.0-10 - Rebuild for openmpi 2.0 * Wed Feb 03 2016 Fedora Release Engineering - 3.3.0-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Tue Sep 15 2015 Orion Poplawski - 3.3.0-8 - Rebuild for openmpi 1.10.0 * Sat Aug 15 2015 Zbigniew Jędrzejewski-Szmek - 3.3.0-7 - Rebuild for MPI provides * Sun Jul 26 2015 Sandro Mani - 3.3.0-6 - Rebuild for RPM MPI Requires Provides Change * Wed Jun 17 2015 Fedora Release Engineering - 3.3.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Sat May 02 2015 Kalev Lember - 3.3.0-4 - Rebuilt for GCC 5 C++11 ABI change * Thu Mar 12 2015 Thomas Spura - 3.3.0-3 - Rebuild for changed mpich libraries - Added patch for building with cython-0.22 - Remove group tag * Sat Aug 16 2014 Fedora Release Engineering - 3.3.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Mon Aug 11 2014 Thomas Spura - 3.3.0-1 - update to 3.3.0 * Sat Jun 07 2014 Fedora Release Engineering - 3.2.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Wed May 28 2014 Thomas Spura - 3.2.0-3 - Rebuilt for https://fedoraproject.org/wiki/Changes/f21tcl86 * Sun May 25 2014 Thomas Spura - 3.2.0-2 - run autoreconf in %%build to support aarch64 * Sat May 24 2014 Thomas Spura - 3.2.0-1 - update to 3.2.0 * Wed May 21 2014 Jaroslav Škarvada - 3.1.1-6 - Rebuilt for https://fedoraproject.org/wiki/Changes/f21tcl86 * Sat Feb 22 2014 Deji Akingunola - 3.1.1-5 - Rebuild for mpich-3.1 * Sat Aug 03 2013 Fedora Release Engineering - 3.1.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Sat Jul 20 2013 Deji Akingunola - 3.1.1-3 - Rename mpich2 sub-packages to mpich and rebuild for mpich-3.0 * Wed Feb 13 2013 Fedora Release Engineering - 3.1.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Wed Nov 14 2012 Thomas Spura - 3.1.1-1 - rebuild for newer mpich2 - update to new version - disable tk per upstream request - drop patch * Thu Jul 19 2012 Fedora Release Engineering - 3.0.2-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Fri Jan 13 2012 Fedora Release Engineering - 3.0.2-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Oct 26 2011 Thomas Spura - 3.0.2-2 - add missing BR autoconf/automake - use _isa where possible - use general tclsh shebang - build --with-tk * Thu Oct 6 2011 Thomas Spura - 3.0.2-1 - update to new version - introduce configure_mpi * Sun Sep 25 2011 Thomas Spura - 3.0.1-3 - use correct MPI_SUFFIX - don't install library as upstream doesn't support it anymore * Sun Sep 25 2011 Thomas Spura - 3.0.1-2 - correctly install into _libdir/openmpi and not _libdir/name-openmpi * Fri Sep 16 2011 Thomas Spura - 3.0.1-1 - initial packaging