Warning: Permanently added '172.25.95.225' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 842182 --chroot fedora-29-ppc64le --detached default Version: 0.22 Task: {'build_id': 842182, 'buildroot_pkgs': [], 'chroot': 'fedora-29-ppc64le', 'enable_net': False, 'fetch_sources_only': True, 'git_hash': '51b7f50dab49ed912c4886e84cb248619432f07a', 'git_repo': 'junghans/gromacs/gromacs', 'memory_reqs': 2048, 'package_name': 'gromacs', 'package_version': '2019-1.fc28', 'project_dirname': 'gromacs', 'project_name': 'gromacs', 'project_owner': 'junghans', 'repos': [{'id': 'copr_base', 'name': 'Copr repository', 'url': 'https://copr-be.cloud.fedoraproject.org/results/junghans/gromacs/fedora-29-ppc64le/'}], 'source_json': {'clone_url': 'https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git', 'committish': '51b7f50dab49ed912c4886e84cb248619432f07a'}, 'source_type': 8, 'submitter': 'junghans', 'task_id': '842182-fedora-29-ppc64le', 'timeout': 64800, 'use_bootstrap_container': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git /tmp/tmpjdnjymm0/gromacs --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/junghans/gromacs/gromacs.git', '/tmp/tmpjdnjymm0/gromacs', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/tmpjdnjymm0/gromacs'... Running: git checkout 51b7f50dab49ed912c4886e84cb248619432f07a cmd: ['git', 'checkout', '51b7f50dab49ed912c4886e84cb248619432f07a'] cwd: /tmp/tmpjdnjymm0/gromacs rc: 0 stdout: stderr: Note: checking out '51b7f50dab49ed912c4886e84cb248619432f07a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 51b7f50 automatic import of gromacs 2019-1.fc28 Running: cp -r . /tmp/tmpsflqn8e2 cmd: ['cp', '-r', '.', '/tmp/tmpsflqn8e2'] cwd: /tmp/tmpjdnjymm0/gromacs rc: 0 stdout: stderr: Generated rpkg config: [rpkg] preprocess_spec = True # auto-packing is deprecated: auto_pack = True [git] lookaside = https://copr-dist-git.fedorainfracloud.org/repo/pkgs/%(ns2)s/%(ns1)s/%(name)s/%(filename)s/%(hashtype)s/%(hash)s/%(filename)s anongiturl = https://copr-dist-git.fedorainfracloud.org/git/%(module)s Writing config into /tmp/tmpjdnjymm0/.config/rpkg.conf Running: rpkg -C /tmp/tmpjdnjymm0/.config/rpkg.conf sources --outdir /tmp/tmpsflqn8e2 cmd: ['rpkg', '-C', '/tmp/tmpjdnjymm0/.config/rpkg.conf', 'sources', '--outdir', '/tmp/tmpsflqn8e2'] cwd: /tmp/tmpjdnjymm0/gromacs rc: 0 stdout: Downloading gromacs-2019.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org Downloading manual-2019.pdf from lookaside cache at copr-dist-git.fedorainfracloud.org Downloading regressiontests-2019.tar.gz from lookaside cache at copr-dist-git.fedorainfracloud.org stderr: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running: unbuffer /usr/bin/mock --buildsrpm --spec /tmp/tmpsflqn8e2/gromacs.spec --sources /tmp/tmpsflqn8e2 --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --define %_disable_source_fetch 0 --uniqueext 1546815481.226323 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/tmp/tmpsflqn8e2/gromacs.spec) Config(842182-fedora-29-ppc64le) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/842182-fedora-29-ppc64le-1546815481.226323/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: dnf install fedora 52 MB/s | 55 MB 00:01 updates 78 MB/s | 16 MB 00:00 Failed to synchronize cache for repo 'copr_base', disabling. Last metadata expiration check: 0:00:06 ago on Sun 06 Jan 2019 10:58:27 PM UTC. Dependencies resolved. ================================================================================ Group Packages ================================================================================ Marking packages as installed by the group: @Buildsystem building group coreutils xz patch sed tar util-linux bash cpio gawk gzip unzip grep info shadow-utils findutils rpm-build diffutils which make redhat-rpm-config bzip2 fedora-release ================================================================================ Package Arch Version Repository Size ================================================================================ Installing group packages: bash ppc64le 4.4.23-5.fc29 fedora 1.5 M bzip2 ppc64le 1.0.6-28.fc29 fedora 52 k coreutils ppc64le 8.30-6.fc29 updates 1.1 M cpio ppc64le 2.12-9.fc29 fedora 255 k diffutils ppc64le 3.6-5.fc29 fedora 358 k fedora-release noarch 29-7 updates 32 k findutils ppc64le 1:4.6.0-21.fc29 updates 519 k gawk ppc64le 4.2.1-3.fc29 fedora 1.1 M grep ppc64le 3.1-8.fc29 fedora 258 k gzip ppc64le 1.9-7.fc29 fedora 156 k info ppc64le 6.5-11.fc29 fedora 194 k make ppc64le 1:4.2.1-10.fc29 fedora 494 k patch ppc64le 2.7.6-8.fc29 updates 132 k redhat-rpm-config noarch 118-1.fc29 fedora 58 k rpm-build ppc64le 4.14.2.1-2.fc29 updates 116 k sed ppc64le 4.5-2.fc29 fedora 293 k shadow-utils ppc64le 2:4.6-4.fc29 updates 1.2 M tar ppc64le 2:1.30-6.fc29 fedora 825 k unzip ppc64le 6.0-42.fc29 updates 176 k util-linux ppc64le 2.32.1-1.fc29 fedora 2.5 M which ppc64le 2.21-11.fc29 fedora 43 k xz ppc64le 5.2.4-3.fc29 fedora 152 k Installing dependencies: audit-libs ppc64le 3.0-0.5.20181218gitbdb72c0.fc29 updates 120 k basesystem noarch 11-6.fc29 fedora 6.9 k binutils ppc64le 2.31.1-15.fc29 updates 6.4 M brotli ppc64le 1.0.5-1.fc29 fedora 327 k bzip2-libs ppc64le 1.0.6-28.fc29 fedora 44 k ca-certificates noarch 2018.2.26-2.fc29 fedora 385 k chkconfig ppc64le 1.10-6.fc29 fedora 177 k coreutils-common ppc64le 8.30-6.fc29 updates 1.9 M cracklib ppc64le 2.9.6-15.fc29 fedora 78 k crypto-policies noarch 20181026-1.gitd42aaa6.fc29 updates 46 k curl ppc64le 7.61.1-6.fc29 updates 316 k cyrus-sasl-lib ppc64le 2.1.27-0.3rc7.fc29 fedora 111 k dwz ppc64le 0.12-9.fc29 fedora 111 k efi-srpm-macros noarch 3-3.fc29 fedora 21 k elfutils ppc64le 0.174-5.fc29 updates 302 k elfutils-default-yama-scope noarch 0.174-5.fc29 updates 16 k elfutils-libelf ppc64le 0.174-5.fc29 updates 183 k elfutils-libs ppc64le 0.174-5.fc29 updates 292 k expat ppc64le 2.2.6-1.fc29 fedora 102 k fedora-gpg-keys noarch 29-2 updates 100 k fedora-repos noarch 29-2 updates 9.7 k file ppc64le 5.34-7.fc29 updates 50 k file-libs ppc64le 5.34-7.fc29 updates 533 k filesystem ppc64le 3.9-2.fc29 fedora 1.1 M fpc-srpm-macros noarch 1.1-5.fc29 fedora 7.5 k gc ppc64le 7.6.4-4.fc29 fedora 107 k gdb-headless ppc64le 8.2-5.fc29 updates 3.2 M gdbm-libs ppc64le 1:1.18-1.fc29 fedora 53 k ghc-srpm-macros noarch 1.4.2-8.fc29 fedora 7.4 k glib2 ppc64le 2.58.2-1.fc29 updates 2.6 M glibc ppc64le 2.28-26.fc29 updates 3.9 M glibc-all-langpacks ppc64le 2.28-26.fc29 updates 25 M glibc-common ppc64le 2.28-26.fc29 updates 817 k gmp ppc64le 1:6.1.2-8.fc29 fedora 276 k gnat-srpm-macros noarch 4-6.fc29 fedora 8.2 k go-srpm-macros noarch 2-18.fc29 fedora 11 k guile ppc64le 5:2.0.14-12.fc29 fedora 3.5 M keyutils-libs ppc64le 1.5.10-8.fc29 fedora 27 k krb5-libs ppc64le 1.16.1-23.fc29 updates 769 k libacl ppc64le 2.2.53-2.fc29 fedora 27 k libarchive ppc64le 3.3.3-2.fc29 updates 398 k libatomic_ops ppc64le 7.6.6-1.fc29 fedora 34 k libattr ppc64le 2.4.48-3.fc29 fedora 18 k libbabeltrace ppc64le 1.5.6-1.fc29 fedora 217 k libblkid ppc64le 2.32.1-1.fc29 fedora 171 k libcap ppc64le 2.25-12.fc29 fedora 52 k libcap-ng ppc64le 0.7.9-4.fc29 fedora 28 k libcom_err ppc64le 1.44.3-1.fc29 fedora 27 k libcurl ppc64le 7.61.1-6.fc29 updates 260 k libdb ppc64le 5.3.28-33.fc29 fedora 790 k libdb-utils ppc64le 5.3.28-33.fc29 fedora 152 k libfdisk ppc64le 2.32.1-1.fc29 fedora 218 k libffi ppc64le 3.1-18.fc29 fedora 33 k libgcc ppc64le 8.2.1-6.fc29 updates 85 k libgcrypt ppc64le 1.8.4-1.fc29 updates 410 k libgpg-error ppc64le 1.31-2.fc29 fedora 243 k libidn2 ppc64le 2.0.5-2.fc29 fedora 89 k libmetalink ppc64le 0.1.3-7.fc29 fedora 33 k libmount ppc64le 2.32.1-1.fc29 fedora 194 k libnghttp2 ppc64le 1.34.0-1.fc29 fedora 77 k libnsl2 ppc64le 1.2.0-3.20180605git4a062cf.fc29 fedora 62 k libpkgconf ppc64le 1.5.3-2.fc29 fedora 39 k libpsl ppc64le 0.20.2-5.fc29 fedora 60 k libpwquality ppc64le 1.4.0-10.fc29 fedora 98 k libselinux ppc64le 2.8-4.fc29 fedora 92 k libsemanage ppc64le 2.8-4.fc29 fedora 119 k libsepol ppc64le 2.8-2.fc29 fedora 328 k libsigsegv ppc64le 2.11-6.fc29 fedora 26 k libsmartcols ppc64le 2.32.1-1.fc29 fedora 122 k libssh ppc64le 0.8.5-1.fc29 updates 231 k libstdc++ ppc64le 8.2.1-6.fc29 updates 500 k libtasn1 ppc64le 4.13-5.fc29 updates 74 k libtirpc ppc64le 1.1.4-2.rc2.fc29 updates 111 k libtool-ltdl ppc64le 2.4.6-27.fc29 fedora 38 k libunistring ppc64le 0.9.10-4.fc29 fedora 417 k libutempter ppc64le 1.1.6-15.fc29 fedora 26 k libuuid ppc64le 2.32.1-1.fc29 fedora 29 k libverto ppc64le 0.3.0-6.fc29 fedora 23 k libxcrypt ppc64le 4.4.2-3.fc29 updates 127 k libxml2 ppc64le 2.9.8-4.fc29 fedora 707 k libzstd ppc64le 1.3.8-1.fc29 updates 255 k lua-libs ppc64le 5.3.5-2.fc29 fedora 122 k lz4-libs ppc64le 1.8.3-1.fc29 updates 67 k mpfr ppc64le 3.1.6-2.fc29 fedora 229 k ncurses ppc64le 6.1-8.20180923.fc29 fedora 366 k ncurses-base noarch 6.1-8.20180923.fc29 fedora 58 k ncurses-libs ppc64le 6.1-8.20180923.fc29 fedora 316 k nim-srpm-macros noarch 1-3.fc29 fedora 8.0 k ocaml-srpm-macros noarch 5-4.fc29 fedora 7.8 k openblas-srpm-macros noarch 2-4.fc29 fedora 7.2 k openldap ppc64le 2.4.46-9.fc29 updates 307 k openssl-libs ppc64le 1:1.1.1-3.fc29 fedora 1.4 M p11-kit ppc64le 0.23.14-1.fc29 fedora 238 k p11-kit-trust ppc64le 0.23.14-1.fc29 fedora 135 k pam ppc64le 1.3.1-15.fc29 updates 680 k pcre ppc64le 8.42-5.fc29 updates 183 k pcre2 ppc64le 10.32-4.fc29 updates 226 k perl-srpm-macros noarch 1-28.fc29 fedora 8.1 k pkgconf ppc64le 1.5.3-2.fc29 fedora 39 k pkgconf-m4 noarch 1.5.3-2.fc29 fedora 17 k pkgconf-pkg-config ppc64le 1.5.3-2.fc29 fedora 15 k popt ppc64le 1.16-15.fc29 fedora 60 k publicsuffix-list-dafsa noarch 20180723-1.fc29 fedora 54 k python-pip-wheel noarch 18.1-1.fc29 updates 1.2 M python-setuptools-wheel noarch 40.4.3-1.fc29 fedora 274 k python-srpm-macros noarch 3-37.fc29 fedora 11 k python3-libs ppc64le 3.7.2-1.fc29 updates 7.4 M qt5-srpm-macros noarch 5.11.1-4.fc29 fedora 9.4 k readline ppc64le 7.0-12.fc29 fedora 200 k rpm ppc64le 4.14.2.1-2.fc29 updates 486 k rpm-build-libs ppc64le 4.14.2.1-2.fc29 updates 101 k rpm-libs ppc64le 4.14.2.1-2.fc29 updates 305 k rpm-plugin-selinux ppc64le 4.14.2.1-2.fc29 updates 24 k rust-srpm-macros noarch 6-1.fc29 fedora 8.4 k setup noarch 2.12.1-1.fc29 fedora 147 k sqlite-libs ppc64le 3.26.0-1.fc29 updates 583 k systemd-libs ppc64le 239-7.git3bf819c.fc29 updates 465 k tzdata noarch 2018g-1.fc29 updates 425 k xz-libs ppc64le 5.2.4-3.fc29 fedora 105 k zip ppc64le 3.0-23.fc29 fedora 265 k zlib ppc64le 1.2.11-14.fc29 fedora 93 k zstd ppc64le 1.3.8-1.fc29 updates 316 k Transaction Summary ================================================================================ Install 144 Packages Total download size: 88 M Installed size: 486 M Downloading Packages: (1/144): gzip-1.9-7.fc29.ppc64le.rpm 12 MB/s | 156 kB 00:00 (2/144): diffutils-3.6-5.fc29.ppc64le.rpm 16 MB/s | 358 kB 00:00 (3/144): make-4.2.1-10.fc29.ppc64le.rpm 21 MB/s | 494 kB 00:00 (4/144): gawk-4.2.1-3.fc29.ppc64le.rpm 22 MB/s | 1.1 MB 00:00 (5/144): redhat-rpm-config-118-1.fc29.noarch.rp 12 MB/s | 58 kB 00:00 (6/144): sed-4.5-2.fc29.ppc64le.rpm 21 MB/s | 293 kB 00:00 (7/144): grep-3.1-8.fc29.ppc64le.rpm 21 MB/s | 258 kB 00:00 (8/144): which-2.21-11.fc29.ppc64le.rpm 8.3 MB/s | 43 kB 00:00 (9/144): bash-4.4.23-5.fc29.ppc64le.rpm 24 MB/s | 1.5 MB 00:00 (10/144): util-linux-2.32.1-1.fc29.ppc64le.rpm 23 MB/s | 2.5 MB 00:00 (11/144): info-6.5-11.fc29.ppc64le.rpm 14 MB/s | 194 kB 00:00 (12/144): tar-1.30-6.fc29.ppc64le.rpm 18 MB/s | 825 kB 00:00 (13/144): cpio-2.12-9.fc29.ppc64le.rpm 17 MB/s | 255 kB 00:00 (14/144): xz-5.2.4-3.fc29.ppc64le.rpm 13 MB/s | 152 kB 00:00 (15/144): bzip2-1.0.6-28.fc29.ppc64le.rpm 9.5 MB/s | 52 kB 00:00 (16/144): fedora-release-29-7.noarch.rpm 5.4 MB/s | 32 kB 00:00 (17/144): rpm-build-4.14.2.1-2.fc29.ppc64le.rpm 11 MB/s | 116 kB 00:00 (18/144): findutils-4.6.0-21.fc29.ppc64le.rpm 22 MB/s | 519 kB 00:00 (19/144): patch-2.7.6-8.fc29.ppc64le.rpm 15 MB/s | 132 kB 00:00 (20/144): unzip-6.0-42.fc29.ppc64le.rpm 18 MB/s | 176 kB 00:00 (21/144): shadow-utils-4.6-4.fc29.ppc64le.rpm 29 MB/s | 1.2 MB 00:00 (22/144): gmp-6.1.2-8.fc29.ppc64le.rpm 21 MB/s | 276 kB 00:00 (23/144): libsigsegv-2.11-6.fc29.ppc64le.rpm 4.1 MB/s | 26 kB 00:00 (24/144): mpfr-3.1.6-2.fc29.ppc64le.rpm 15 MB/s | 229 kB 00:00 (25/144): coreutils-8.30-6.fc29.ppc64le.rpm 21 MB/s | 1.1 MB 00:00 (26/144): filesystem-3.9-2.fc29.ppc64le.rpm 21 MB/s | 1.1 MB 00:00 (27/144): readline-7.0-12.fc29.ppc64le.rpm 13 MB/s | 200 kB 00:00 (28/144): libcap-ng-0.7.9-4.fc29.ppc64le.rpm 5.8 MB/s | 28 kB 00:00 (29/144): libblkid-2.32.1-1.fc29.ppc64le.rpm 23 MB/s | 171 kB 00:00 (30/144): libfdisk-2.32.1-1.fc29.ppc64le.rpm 28 MB/s | 218 kB 00:00 (31/144): libmount-2.32.1-1.fc29.ppc64le.rpm 23 MB/s | 194 kB 00:00 (32/144): libselinux-2.8-4.fc29.ppc64le.rpm 12 MB/s | 92 kB 00:00 (33/144): libsmartcols-2.32.1-1.fc29.ppc64le.rp 24 MB/s | 122 kB 00:00 (34/144): libutempter-1.1.6-15.fc29.ppc64le.rpm 4.9 MB/s | 26 kB 00:00 (35/144): libuuid-2.32.1-1.fc29.ppc64le.rpm 5.6 MB/s | 29 kB 00:00 (36/144): zlib-1.2.11-14.fc29.ppc64le.rpm 11 MB/s | 93 kB 00:00 (37/144): ncurses-libs-6.1-8.20180923.fc29.ppc6 18 MB/s | 316 kB 00:00 (38/144): dwz-0.12-9.fc29.ppc64le.rpm 11 MB/s | 111 kB 00:00 (39/144): efi-srpm-macros-3-3.fc29.noarch.rpm 4.8 MB/s | 21 kB 00:00 (40/144): fpc-srpm-macros-1.1-5.fc29.noarch.rpm 2.5 MB/s | 7.5 kB 00:00 (41/144): ghc-srpm-macros-1.4.2-8.fc29.noarch.r 2.5 MB/s | 7.4 kB 00:00 (42/144): gnat-srpm-macros-4-6.fc29.noarch.rpm 2.2 MB/s | 8.2 kB 00:00 (43/144): go-srpm-macros-2-18.fc29.noarch.rpm 3.2 MB/s | 11 kB 00:00 (44/144): nim-srpm-macros-1-3.fc29.noarch.rpm 1.8 MB/s | 8.0 kB 00:00 (45/144): ocaml-srpm-macros-5-4.fc29.noarch.rpm 1.9 MB/s | 7.8 kB 00:00 (46/144): openblas-srpm-macros-2-4.fc29.noarch. 2.7 MB/s | 7.2 kB 00:00 (47/144): perl-srpm-macros-1-28.fc29.noarch.rpm 2.6 MB/s | 8.1 kB 00:00 (48/144): python-srpm-macros-3-37.fc29.noarch.r 3.8 MB/s | 11 kB 00:00 (49/144): qt5-srpm-macros-5.11.1-4.fc29.noarch. 2.2 MB/s | 9.4 kB 00:00 (50/144): rust-srpm-macros-6-1.fc29.noarch.rpm 1.9 MB/s | 8.4 kB 00:00 (51/144): libacl-2.2.53-2.fc29.ppc64le.rpm 2.9 MB/s | 27 kB 00:00 (52/144): zip-3.0-23.fc29.ppc64le.rpm 17 MB/s | 265 kB 00:00 (53/144): xz-libs-5.2.4-3.fc29.ppc64le.rpm 14 MB/s | 105 kB 00:00 (54/144): bzip2-libs-1.0.6-28.fc29.ppc64le.rpm 8.8 MB/s | 44 kB 00:00 (55/144): libattr-2.4.48-3.fc29.ppc64le.rpm 5.0 MB/s | 18 kB 00:00 (56/144): libsemanage-2.8-4.fc29.ppc64le.rpm 19 MB/s | 119 kB 00:00 (57/144): setup-2.12.1-1.fc29.noarch.rpm 18 MB/s | 147 kB 00:00 (58/144): libcap-2.25-12.fc29.ppc64le.rpm 11 MB/s | 52 kB 00:00 (59/144): guile-2.0.14-12.fc29.ppc64le.rpm 38 MB/s | 3.5 MB 00:00 (60/144): lua-libs-5.3.5-2.fc29.ppc64le.rpm 5.8 MB/s | 122 kB 00:00 (61/144): pkgconf-pkg-config-1.5.3-2.fc29.ppc64 2.6 MB/s | 15 kB 00:00 (62/144): popt-1.16-15.fc29.ppc64le.rpm 8.1 MB/s | 60 kB 00:00 (63/144): libdb-5.3.28-33.fc29.ppc64le.rpm 20 MB/s | 790 kB 00:00 (64/144): rpm-4.14.2.1-2.fc29.ppc64le.rpm 30 MB/s | 486 kB 00:00 (65/144): openssl-libs-1.1.1-3.fc29.ppc64le.rpm 37 MB/s | 1.4 MB 00:00 (66/144): ncurses-6.1-8.20180923.fc29.ppc64le.r 17 MB/s | 366 kB 00:00 (67/144): libsepol-2.8-2.fc29.ppc64le.rpm 38 MB/s | 328 kB 00:00 (68/144): ncurses-base-6.1-8.20180923.fc29.noar 8.3 MB/s | 58 kB 00:00 (69/144): gc-7.6.4-4.fc29.ppc64le.rpm 25 MB/s | 107 kB 00:00 (70/144): libffi-3.1-18.fc29.ppc64le.rpm 7.0 MB/s | 33 kB 00:00 (71/144): libtool-ltdl-2.4.6-27.fc29.ppc64le.rp 5.9 MB/s | 38 kB 00:00 (72/144): ca-certificates-2018.2.26-2.fc29.noar 30 MB/s | 385 kB 00:00 (73/144): libunistring-0.9.10-4.fc29.ppc64le.rp 20 MB/s | 417 kB 00:00 (74/144): coreutils-common-8.30-6.fc29.ppc64le. 39 MB/s | 1.9 MB 00:00 (75/144): pkgconf-m4-1.5.3-2.fc29.noarch.rpm 1.9 MB/s | 17 kB 00:00 (76/144): pkgconf-1.5.3-2.fc29.ppc64le.rpm 3.1 MB/s | 39 kB 00:00 (77/144): libdb-utils-5.3.28-33.fc29.ppc64le.rp 32 MB/s | 152 kB 00:00 (78/144): libatomic_ops-7.6.6-1.fc29.ppc64le.rp 6.9 MB/s | 34 kB 00:00 (79/144): p11-kit-0.23.14-1.fc29.ppc64le.rpm 32 MB/s | 238 kB 00:00 (80/144): libpkgconf-1.5.3-2.fc29.ppc64le.rpm 9.3 MB/s | 39 kB 00:00 (81/144): p11-kit-trust-0.23.14-1.fc29.ppc64le. 19 MB/s | 135 kB 00:00 (82/144): chkconfig-1.10-6.fc29.ppc64le.rpm 21 MB/s | 177 kB 00:00 (83/144): rpm-plugin-selinux-4.14.2.1-2.fc29.pp 3.8 MB/s | 24 kB 00:00 (84/144): 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Running transaction test Transaction test succeeded. 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libpwquality-1.4.0-10.fc29.ppc64le 113/144 Installing : pam-1.3.1-15.fc29.ppc64le 114/144 Installing : python3-libs-3.7.2-1.fc29.ppc64le 115/144 Installing : libssh-0.8.5-1.fc29.ppc64le 116/144 Installing : cyrus-sasl-lib-2.1.27-0.3rc7.fc29.ppc64le 117/144 Running scriptlet: cyrus-sasl-lib-2.1.27-0.3rc7.fc29.ppc64le 117/144 Installing : openldap-2.4.46-9.fc29.ppc64le 118/144 Installing : brotli-1.0.5-1.fc29.ppc64le 119/144 Installing : libnghttp2-1.34.0-1.fc29.ppc64le 120/144 Installing : libcurl-7.61.1-6.fc29.ppc64le 121/144 Installing : curl-7.61.1-6.fc29.ppc64le 122/144 Installing : rpm-plugin-selinux-4.14.2.1-2.fc29.ppc64le 123/144 Installing : rpm-libs-4.14.2.1-2.fc29.ppc64le 124/144 Installing : rpm-4.14.2.1-2.fc29.ppc64le 125/144 Installing : efi-srpm-macros-3-3.fc29.noarch 126/144 Installing : rpm-build-libs-4.14.2.1-2.fc29.ppc64le 127/144 Installing : gdb-headless-8.2-5.fc29.ppc64le 128/144 Installing : rust-srpm-macros-6-1.fc29.noarch 129/144 Installing : qt5-srpm-macros-5.11.1-4.fc29.noarch 130/144 Installing : python-srpm-macros-3-37.fc29.noarch 131/144 Installing : perl-srpm-macros-1-28.fc29.noarch 132/144 Installing : openblas-srpm-macros-2-4.fc29.noarch 133/144 Installing : ocaml-srpm-macros-5-4.fc29.noarch 134/144 Installing : nim-srpm-macros-1-3.fc29.noarch 135/144 Installing : go-srpm-macros-2-18.fc29.noarch 136/144 Installing : gnat-srpm-macros-4-6.fc29.noarch 137/144 Installing : ghc-srpm-macros-1.4.2-8.fc29.noarch 138/144 Installing : fpc-srpm-macros-1.1-5.fc29.noarch 139/144 Installing : redhat-rpm-config-118-1.fc29.noarch 140/144 Installing : rpm-build-4.14.2.1-2.fc29.ppc64le 141/144 Installing : util-linux-2.32.1-1.fc29.ppc64le 142/144 Running scriptlet: util-linux-2.32.1-1.fc29.ppc64le 142/144 Installing : make-1:4.2.1-10.fc29.ppc64le 143/144 Running scriptlet: make-1:4.2.1-10.fc29.ppc64le 143/144 Installing : which-2.21-11.fc29.ppc64le 144/144 Running scriptlet: fedora-release-29-7.noarch 144/144 Running scriptlet: filesystem-3.9-2.fc29.ppc64le 144/144 Running scriptlet: glibc-all-langpacks-2.28-26.fc29.ppc64le 144/144 Running scriptlet: glibc-common-2.28-26.fc29.ppc64le 144/144 Running scriptlet: info-6.5-11.fc29.ppc64le 144/144 Running scriptlet: glib2-2.58.2-1.fc29.ppc64le 144/144 Verifying : gawk-4.2.1-3.fc29.ppc64le 1/144 Verifying : diffutils-3.6-5.fc29.ppc64le 2/144 Verifying : gzip-1.9-7.fc29.ppc64le 3/144 Verifying : util-linux-2.32.1-1.fc29.ppc64le 4/144 Verifying : make-1:4.2.1-10.fc29.ppc64le 5/144 Verifying : bash-4.4.23-5.fc29.ppc64le 6/144 Verifying : redhat-rpm-config-118-1.fc29.noarch 7/144 Verifying : sed-4.5-2.fc29.ppc64le 8/144 Verifying : grep-3.1-8.fc29.ppc64le 9/144 Verifying : which-2.21-11.fc29.ppc64le 10/144 Verifying : tar-2:1.30-6.fc29.ppc64le 11/144 Verifying : info-6.5-11.fc29.ppc64le 12/144 Verifying : cpio-2.12-9.fc29.ppc64le 13/144 Verifying : xz-5.2.4-3.fc29.ppc64le 14/144 Verifying : bzip2-1.0.6-28.fc29.ppc64le 15/144 Verifying : shadow-utils-2:4.6-4.fc29.ppc64le 16/144 Verifying : findutils-1:4.6.0-21.fc29.ppc64le 17/144 Verifying : fedora-release-29-7.noarch 18/144 Verifying : rpm-build-4.14.2.1-2.fc29.ppc64le 19/144 Verifying : patch-2.7.6-8.fc29.ppc64le 20/144 Verifying : unzip-6.0-42.fc29.ppc64le 21/144 Verifying : coreutils-8.30-6.fc29.ppc64le 22/144 Verifying : filesystem-3.9-2.fc29.ppc64le 23/144 Verifying : gmp-1:6.1.2-8.fc29.ppc64le 24/144 Verifying : libsigsegv-2.11-6.fc29.ppc64le 25/144 Verifying : mpfr-3.1.6-2.fc29.ppc64le 26/144 Verifying : readline-7.0-12.fc29.ppc64le 27/144 Verifying : libblkid-2.32.1-1.fc29.ppc64le 28/144 Verifying : libcap-ng-0.7.9-4.fc29.ppc64le 29/144 Verifying : libfdisk-2.32.1-1.fc29.ppc64le 30/144 Verifying : libmount-2.32.1-1.fc29.ppc64le 31/144 Verifying : libselinux-2.8-4.fc29.ppc64le 32/144 Verifying : libsmartcols-2.32.1-1.fc29.ppc64le 33/144 Verifying : libutempter-1.1.6-15.fc29.ppc64le 34/144 Verifying : libuuid-2.32.1-1.fc29.ppc64le 35/144 Verifying : ncurses-libs-6.1-8.20180923.fc29.ppc64le 36/144 Verifying : zlib-1.2.11-14.fc29.ppc64le 37/144 Verifying : guile-5:2.0.14-12.fc29.ppc64le 38/144 Verifying : dwz-0.12-9.fc29.ppc64le 39/144 Verifying : efi-srpm-macros-3-3.fc29.noarch 40/144 Verifying : fpc-srpm-macros-1.1-5.fc29.noarch 41/144 Verifying : ghc-srpm-macros-1.4.2-8.fc29.noarch 42/144 Verifying : gnat-srpm-macros-4-6.fc29.noarch 43/144 Verifying : go-srpm-macros-2-18.fc29.noarch 44/144 Verifying : nim-srpm-macros-1-3.fc29.noarch 45/144 Verifying : ocaml-srpm-macros-5-4.fc29.noarch 46/144 Verifying : openblas-srpm-macros-2-4.fc29.noarch 47/144 Verifying : perl-srpm-macros-1-28.fc29.noarch 48/144 Verifying : python-srpm-macros-3-37.fc29.noarch 49/144 Verifying : qt5-srpm-macros-5.11.1-4.fc29.noarch 50/144 Verifying : rust-srpm-macros-6-1.fc29.noarch 51/144 Verifying : zip-3.0-23.fc29.ppc64le 52/144 Verifying : libacl-2.2.53-2.fc29.ppc64le 53/144 Verifying : xz-libs-5.2.4-3.fc29.ppc64le 54/144 Verifying : bzip2-libs-1.0.6-28.fc29.ppc64le 55/144 Verifying : libattr-2.4.48-3.fc29.ppc64le 56/144 Verifying : libsemanage-2.8-4.fc29.ppc64le 57/144 Verifying : setup-2.12.1-1.fc29.noarch 58/144 Verifying : libcap-2.25-12.fc29.ppc64le 59/144 Verifying : libdb-5.3.28-33.fc29.ppc64le 60/144 Verifying : lua-libs-5.3.5-2.fc29.ppc64le 61/144 Verifying : openssl-libs-1:1.1.1-3.fc29.ppc64le 62/144 Verifying : pkgconf-pkg-config-1.5.3-2.fc29.ppc64le 63/144 Verifying : popt-1.16-15.fc29.ppc64le 64/144 Verifying : rpm-4.14.2.1-2.fc29.ppc64le 65/144 Verifying : ncurses-6.1-8.20180923.fc29.ppc64le 66/144 Verifying : coreutils-common-8.30-6.fc29.ppc64le 67/144 Verifying : libsepol-2.8-2.fc29.ppc64le 68/144 Verifying : ncurses-base-6.1-8.20180923.fc29.noarch 69/144 Verifying : gc-7.6.4-4.fc29.ppc64le 70/144 Verifying : libffi-3.1-18.fc29.ppc64le 71/144 Verifying : libtool-ltdl-2.4.6-27.fc29.ppc64le 72/144 Verifying : libunistring-0.9.10-4.fc29.ppc64le 73/144 Verifying : ca-certificates-2018.2.26-2.fc29.noarch 74/144 Verifying : pkgconf-1.5.3-2.fc29.ppc64le 75/144 Verifying : pkgconf-m4-1.5.3-2.fc29.noarch 76/144 Verifying : libdb-utils-5.3.28-33.fc29.ppc64le 77/144 Verifying : libatomic_ops-7.6.6-1.fc29.ppc64le 78/144 Verifying : p11-kit-0.23.14-1.fc29.ppc64le 79/144 Verifying : p11-kit-trust-0.23.14-1.fc29.ppc64le 80/144 Verifying : libpkgconf-1.5.3-2.fc29.ppc64le 81/144 Verifying : chkconfig-1.10-6.fc29.ppc64le 82/144 Verifying : rpm-libs-4.14.2.1-2.fc29.ppc64le 83/144 Verifying : rpm-plugin-selinux-4.14.2.1-2.fc29.ppc64le 84/144 Verifying : rpm-build-libs-4.14.2.1-2.fc29.ppc64le 85/144 Verifying : glibc-2.28-26.fc29.ppc64le 86/144 Verifying : basesystem-11-6.fc29.noarch 87/144 Verifying : glibc-common-2.28-26.fc29.ppc64le 88/144 Verifying : audit-libs-3.0-0.5.20181218gitbdb72c0.fc29.ppc64 89/144 Verifying : libxcrypt-4.4.2-3.fc29.ppc64le 90/144 Verifying : elfutils-libelf-0.174-5.fc29.ppc64le 91/144 Verifying : elfutils-libs-0.174-5.fc29.ppc64le 92/144 Verifying : elfutils-0.174-5.fc29.ppc64le 93/144 Verifying : libzstd-1.3.8-1.fc29.ppc64le 94/144 Verifying : file-libs-5.34-7.fc29.ppc64le 95/144 Verifying : file-5.34-7.fc29.ppc64le 96/144 Verifying : binutils-2.31.1-15.fc29.ppc64le 97/144 Verifying : gdb-headless-8.2-5.fc29.ppc64le 98/144 Verifying : expat-2.2.6-1.fc29.ppc64le 99/144 Verifying : libbabeltrace-1.5.6-1.fc29.ppc64le 100/144 Verifying : zstd-1.3.8-1.fc29.ppc64le 101/144 Verifying : libarchive-3.3.3-2.fc29.ppc64le 102/144 Verifying : libxml2-2.9.8-4.fc29.ppc64le 103/144 Verifying : lz4-libs-1.8.3-1.fc29.ppc64le 104/144 Verifying : tzdata-2018g-1.fc29.noarch 105/144 Verifying : libgcc-8.2.1-6.fc29.ppc64le 106/144 Verifying : libstdc++-8.2.1-6.fc29.ppc64le 107/144 Verifying : python3-libs-3.7.2-1.fc29.ppc64le 108/144 Verifying : gdbm-libs-1:1.18-1.fc29.ppc64le 109/144 Verifying : libnsl2-1.2.0-3.20180605git4a062cf.fc29.ppc64le 110/144 Verifying : python-setuptools-wheel-40.4.3-1.fc29.noarch 111/144 Verifying : fedora-repos-29-2.noarch 112/144 Verifying : fedora-gpg-keys-29-2.noarch 113/144 Verifying : elfutils-default-yama-scope-0.174-5.fc29.noarch 114/144 Verifying : pam-1.3.1-15.fc29.ppc64le 115/144 Verifying : cracklib-2.9.6-15.fc29.ppc64le 116/144 Verifying : libpwquality-1.4.0-10.fc29.ppc64le 117/144 Verifying : systemd-libs-239-7.git3bf819c.fc29.ppc64le 118/144 Verifying : libtasn1-4.13-5.fc29.ppc64le 119/144 Verifying : crypto-policies-20181026-1.gitd42aaa6.fc29.noarc 120/144 Verifying : pcre2-10.32-4.fc29.ppc64le 121/144 Verifying : libtirpc-1.1.4-2.rc2.fc29.ppc64le 122/144 Verifying : libcom_err-1.44.3-1.fc29.ppc64le 123/144 Verifying : glib2-2.58.2-1.fc29.ppc64le 124/144 Verifying : pcre-8.42-5.fc29.ppc64le 125/144 Verifying : libgcrypt-1.8.4-1.fc29.ppc64le 126/144 Verifying : libgpg-error-1.31-2.fc29.ppc64le 127/144 Verifying : python-pip-wheel-18.1-1.fc29.noarch 128/144 Verifying : sqlite-libs-3.26.0-1.fc29.ppc64le 129/144 Verifying : krb5-libs-1.16.1-23.fc29.ppc64le 130/144 Verifying : keyutils-libs-1.5.10-8.fc29.ppc64le 131/144 Verifying : libverto-0.3.0-6.fc29.ppc64le 132/144 Verifying : curl-7.61.1-6.fc29.ppc64le 133/144 Verifying : libmetalink-0.1.3-7.fc29.ppc64le 134/144 Verifying : glibc-all-langpacks-2.28-26.fc29.ppc64le 135/144 Verifying : libcurl-7.61.1-6.fc29.ppc64le 136/144 Verifying : brotli-1.0.5-1.fc29.ppc64le 137/144 Verifying : libidn2-2.0.5-2.fc29.ppc64le 138/144 Verifying : libnghttp2-1.34.0-1.fc29.ppc64le 139/144 Verifying : libpsl-0.20.2-5.fc29.ppc64le 140/144 Verifying : libssh-0.8.5-1.fc29.ppc64le 141/144 Verifying : publicsuffix-list-dafsa-20180723-1.fc29.noarch 142/144 Verifying : openldap-2.4.46-9.fc29.ppc64le 143/144 Verifying : cyrus-sasl-lib-2.1.27-0.3rc7.fc29.ppc64le 144/144 Installed: bash.ppc64le 4.4.23-5.fc29 bzip2.ppc64le 1.0.6-28.fc29 coreutils.ppc64le 8.30-6.fc29 cpio.ppc64le 2.12-9.fc29 diffutils.ppc64le 3.6-5.fc29 fedora-release.noarch 29-7 findutils.ppc64le 1:4.6.0-21.fc29 gawk.ppc64le 4.2.1-3.fc29 grep.ppc64le 3.1-8.fc29 gzip.ppc64le 1.9-7.fc29 info.ppc64le 6.5-11.fc29 make.ppc64le 1:4.2.1-10.fc29 patch.ppc64le 2.7.6-8.fc29 redhat-rpm-config.noarch 118-1.fc29 rpm-build.ppc64le 4.14.2.1-2.fc29 sed.ppc64le 4.5-2.fc29 shadow-utils.ppc64le 2:4.6-4.fc29 tar.ppc64le 2:1.30-6.fc29 unzip.ppc64le 6.0-42.fc29 util-linux.ppc64le 2.32.1-1.fc29 which.ppc64le 2.21-11.fc29 xz.ppc64le 5.2.4-3.fc29 audit-libs.ppc64le 3.0-0.5.20181218gitbdb72c0.fc29 basesystem.noarch 11-6.fc29 binutils.ppc64le 2.31.1-15.fc29 brotli.ppc64le 1.0.5-1.fc29 bzip2-libs.ppc64le 1.0.6-28.fc29 ca-certificates.noarch 2018.2.26-2.fc29 chkconfig.ppc64le 1.10-6.fc29 coreutils-common.ppc64le 8.30-6.fc29 cracklib.ppc64le 2.9.6-15.fc29 crypto-policies.noarch 20181026-1.gitd42aaa6.fc29 curl.ppc64le 7.61.1-6.fc29 cyrus-sasl-lib.ppc64le 2.1.27-0.3rc7.fc29 dwz.ppc64le 0.12-9.fc29 efi-srpm-macros.noarch 3-3.fc29 elfutils.ppc64le 0.174-5.fc29 elfutils-default-yama-scope.noarch 0.174-5.fc29 elfutils-libelf.ppc64le 0.174-5.fc29 elfutils-libs.ppc64le 0.174-5.fc29 expat.ppc64le 2.2.6-1.fc29 fedora-gpg-keys.noarch 29-2 fedora-repos.noarch 29-2 file.ppc64le 5.34-7.fc29 file-libs.ppc64le 5.34-7.fc29 filesystem.ppc64le 3.9-2.fc29 fpc-srpm-macros.noarch 1.1-5.fc29 gc.ppc64le 7.6.4-4.fc29 gdb-headless.ppc64le 8.2-5.fc29 gdbm-libs.ppc64le 1:1.18-1.fc29 ghc-srpm-macros.noarch 1.4.2-8.fc29 glib2.ppc64le 2.58.2-1.fc29 glibc.ppc64le 2.28-26.fc29 glibc-all-langpacks.ppc64le 2.28-26.fc29 glibc-common.ppc64le 2.28-26.fc29 gmp.ppc64le 1:6.1.2-8.fc29 gnat-srpm-macros.noarch 4-6.fc29 go-srpm-macros.noarch 2-18.fc29 guile.ppc64le 5:2.0.14-12.fc29 keyutils-libs.ppc64le 1.5.10-8.fc29 krb5-libs.ppc64le 1.16.1-23.fc29 libacl.ppc64le 2.2.53-2.fc29 libarchive.ppc64le 3.3.3-2.fc29 libatomic_ops.ppc64le 7.6.6-1.fc29 libattr.ppc64le 2.4.48-3.fc29 libbabeltrace.ppc64le 1.5.6-1.fc29 libblkid.ppc64le 2.32.1-1.fc29 libcap.ppc64le 2.25-12.fc29 libcap-ng.ppc64le 0.7.9-4.fc29 libcom_err.ppc64le 1.44.3-1.fc29 libcurl.ppc64le 7.61.1-6.fc29 libdb.ppc64le 5.3.28-33.fc29 libdb-utils.ppc64le 5.3.28-33.fc29 libfdisk.ppc64le 2.32.1-1.fc29 libffi.ppc64le 3.1-18.fc29 libgcc.ppc64le 8.2.1-6.fc29 libgcrypt.ppc64le 1.8.4-1.fc29 libgpg-error.ppc64le 1.31-2.fc29 libidn2.ppc64le 2.0.5-2.fc29 libmetalink.ppc64le 0.1.3-7.fc29 libmount.ppc64le 2.32.1-1.fc29 libnghttp2.ppc64le 1.34.0-1.fc29 libnsl2.ppc64le 1.2.0-3.20180605git4a062cf.fc29 libpkgconf.ppc64le 1.5.3-2.fc29 libpsl.ppc64le 0.20.2-5.fc29 libpwquality.ppc64le 1.4.0-10.fc29 libselinux.ppc64le 2.8-4.fc29 libsemanage.ppc64le 2.8-4.fc29 libsepol.ppc64le 2.8-2.fc29 libsigsegv.ppc64le 2.11-6.fc29 libsmartcols.ppc64le 2.32.1-1.fc29 libssh.ppc64le 0.8.5-1.fc29 libstdc++.ppc64le 8.2.1-6.fc29 libtasn1.ppc64le 4.13-5.fc29 libtirpc.ppc64le 1.1.4-2.rc2.fc29 libtool-ltdl.ppc64le 2.4.6-27.fc29 libunistring.ppc64le 0.9.10-4.fc29 libutempter.ppc64le 1.1.6-15.fc29 libuuid.ppc64le 2.32.1-1.fc29 libverto.ppc64le 0.3.0-6.fc29 libxcrypt.ppc64le 4.4.2-3.fc29 libxml2.ppc64le 2.9.8-4.fc29 libzstd.ppc64le 1.3.8-1.fc29 lua-libs.ppc64le 5.3.5-2.fc29 lz4-libs.ppc64le 1.8.3-1.fc29 mpfr.ppc64le 3.1.6-2.fc29 ncurses.ppc64le 6.1-8.20180923.fc29 ncurses-base.noarch 6.1-8.20180923.fc29 ncurses-libs.ppc64le 6.1-8.20180923.fc29 nim-srpm-macros.noarch 1-3.fc29 ocaml-srpm-macros.noarch 5-4.fc29 openblas-srpm-macros.noarch 2-4.fc29 openldap.ppc64le 2.4.46-9.fc29 openssl-libs.ppc64le 1:1.1.1-3.fc29 p11-kit.ppc64le 0.23.14-1.fc29 p11-kit-trust.ppc64le 0.23.14-1.fc29 pam.ppc64le 1.3.1-15.fc29 pcre.ppc64le 8.42-5.fc29 pcre2.ppc64le 10.32-4.fc29 perl-srpm-macros.noarch 1-28.fc29 pkgconf.ppc64le 1.5.3-2.fc29 pkgconf-m4.noarch 1.5.3-2.fc29 pkgconf-pkg-config.ppc64le 1.5.3-2.fc29 popt.ppc64le 1.16-15.fc29 publicsuffix-list-dafsa.noarch 20180723-1.fc29 python-pip-wheel.noarch 18.1-1.fc29 python-setuptools-wheel.noarch 40.4.3-1.fc29 python-srpm-macros.noarch 3-37.fc29 python3-libs.ppc64le 3.7.2-1.fc29 qt5-srpm-macros.noarch 5.11.1-4.fc29 readline.ppc64le 7.0-12.fc29 rpm.ppc64le 4.14.2.1-2.fc29 rpm-build-libs.ppc64le 4.14.2.1-2.fc29 rpm-libs.ppc64le 4.14.2.1-2.fc29 rpm-plugin-selinux.ppc64le 4.14.2.1-2.fc29 rust-srpm-macros.noarch 6-1.fc29 setup.noarch 2.12.1-1.fc29 sqlite-libs.ppc64le 3.26.0-1.fc29 systemd-libs.ppc64le 239-7.git3bf819c.fc29 tzdata.noarch 2018g-1.fc29 xz-libs.ppc64le 5.2.4-3.fc29 zip.ppc64le 3.0-23.fc29 zlib.ppc64le 1.2.11-14.fc29 zstd.ppc64le 1.3.8-1.fc29 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: Start: buildsrpm Start: rpmbuild -bs Building target platforms: ppc64le Building for target ppc64le Wrote: /builddir/build/SRPMS/gromacs-2019-1.fc29.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/842182-fedora-29-ppc64le-1546815481.226323/root/var/log/dnf.rpm.log /var/lib/mock/842182-fedora-29-ppc64le-1546815481.226323/root/var/log/dnf.librepo.log /var/lib/mock/842182-fedora-29-ppc64le-1546815481.226323/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/tmpsflqn8e2/gromacs.spec) Config(child) 1 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running: unbuffer /usr/bin/mock --rebuild /var/lib/copr-rpmbuild/results/gromacs-2019-1.fc29.src.rpm --configdir /var/lib/copr-rpmbuild/results/configs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1546815571.861396 -r child WARNING: Could not find required logging config file: /var/lib/copr-rpmbuild/results/configs/logging.ini. Using default... INFO: mock.py version 1.4.13 starting (python version = 3.6.5)... Start: init plugins INFO: tmpfs initialized INFO: selinux disabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins Start: run INFO: Start(/var/lib/copr-rpmbuild/results/gromacs-2019-1.fc29.src.rpm) Config(842182-fedora-29-ppc64le) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/842182-fedora-29-ppc64le-1546815571.861396/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled HW Info plugin Mock Version: 1.4.13 INFO: Mock Version: 1.4.13 Start: dnf update fedora 76 MB/s | 55 MB 00:00 updates 39 MB/s | 16 MB 00:00 Failed to synchronize cache for repo 'copr_base', disabling. Last metadata expiration check: 0:00:06 ago on Sun 06 Jan 2019 10:59:59 PM UTC. Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for gromacs-2019-1.fc29.src.rpm Start: build setup for gromacs-2019-1.fc29.src.rpm Building target platforms: ppc64le Building for target ppc64le Wrote: /builddir/build/SRPMS/gromacs-2019-1.fc29.src.rpm Failed to synchronize cache for repo 'copr_base', disabling. Last metadata expiration check: 0:00:00 ago on Sun 06 Jan 2019 11:00:17 PM UTC. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: bash-completion noarch 1:2.8-3.fc29 fedora 278 k cmake ppc64le 3.12.1-1.fc29 fedora 7.8 M fftw-devel ppc64le 3.3.8-2.fc29 fedora 130 k gcc-c++ ppc64le 8.2.1-6.fc29 updates 12 M gsl-devel ppc64le 2.4-7.fc29 fedora 559 k hwloc ppc64le 1.11.9-2.fc29 fedora 174 k hwloc-devel ppc64le 1.11.9-2.fc29 fedora 210 k libX11-devel ppc64le 1.6.7-1.fc29 updates 974 k lmfit-devel ppc64le 6.4-3.fc29 fedora 35 k mpich-devel ppc64le 3.2.1-8.fc29 fedora 629 k openblas-devel ppc64le 0.3.3-2.fc29 fedora 87 k openmpi-devel ppc64le 2.1.1-14.fc29 fedora 1.1 M tng-devel ppc64le 1.8.2-2.fc29 fedora 31 k Installing dependencies: Lmod ppc64le 7.8.9-1.fc29 updates 218 k acl ppc64le 2.2.53-2.fc29 fedora 74 k annobin ppc64le 8.23-1.fc29 fedora 129 k autoconf noarch 2.69-28.fc29 fedora 698 k automake noarch 1.16.1-5.fc29 fedora 696 k cmake-data noarch 3.12.1-1.fc29 fedora 1.3 M cmake-filesystem ppc64le 3.12.1-1.fc29 fedora 16 k cmake-rpm-macros noarch 3.12.1-1.fc29 fedora 16 k cpp ppc64le 8.2.1-6.fc29 updates 10 M cryptsetup-libs ppc64le 2.0.6-1.fc29 updates 334 k dbus ppc64le 1:1.12.10-1.fc29 fedora 9.4 k dbus-common noarch 1:1.12.10-1.fc29 fedora 14 k dbus-daemon ppc64le 1:1.12.10-1.fc29 fedora 215 k dbus-libs ppc64le 1:1.12.10-1.fc29 fedora 159 k dbus-tools ppc64le 1:1.12.10-1.fc29 fedora 52 k device-mapper ppc64le 1.02.154-1.fc29 updates 151 k device-mapper-libs ppc64le 1.02.154-1.fc29 updates 186 k dracut ppc64le 049-25.git20181204.fc29 updates 322 k emacs-filesystem noarch 1:26.1-6.fc29 fedora 10 k fftw ppc64le 3.3.8-2.fc29 fedora 47 k fftw-libs ppc64le 3.3.8-2.fc29 fedora 8.3 k fftw-libs-double ppc64le 3.3.8-2.fc29 fedora 646 k fftw-libs-long ppc64le 3.3.8-2.fc29 fedora 883 k fftw-libs-single ppc64le 3.3.8-2.fc29 fedora 647 k fipscheck ppc64le 1.5.0-5.fc29 fedora 26 k fipscheck-lib ppc64le 1.5.0-5.fc29 fedora 13 k gcc ppc64le 8.2.1-6.fc29 updates 21 M gcc-gfortran ppc64le 8.2.1-6.fc29 updates 12 M glibc-devel ppc64le 2.28-26.fc29 updates 1.0 M glibc-headers ppc64le 2.28-26.fc29 updates 462 k gnutls ppc64le 3.6.5-1.fc29 updates 857 k groff-base ppc64le 1.22.3-17.fc29 fedora 1.0 M gsl ppc64le 2.4-7.fc29 fedora 996 k hwloc-libs ppc64le 1.11.9-2.fc29 fedora 1.6 M ibacm ppc64le 16.2-3.fc28 fedora 85 k iptables-libs ppc64le 1.8.0-3.fc29 fedora 60 k isl ppc64le 0.16.1-7.fc29 fedora 1.2 M json-c ppc64le 0.13.1-3.fc29 fedora 40 k jsoncpp ppc64le 1.8.4-5.fc29 fedora 89 k kernel-headers ppc64le 4.19.13-300.fc29 updates 1.2 M kmod ppc64le 25-3.fc29 fedora 124 k kmod-libs ppc64le 25-3.fc29 fedora 66 k libX11 ppc64le 1.6.7-1.fc29 updates 634 k libX11-common noarch 1.6.7-1.fc29 updates 155 k libX11-xcb ppc64le 1.6.7-1.fc29 updates 11 k libXau ppc64le 1.0.8-14.fc29 fedora 30 k libXau-devel ppc64le 1.0.8-14.fc29 fedora 14 k libargon2 ppc64le 20161029-6.fc29 fedora 31 k libasan ppc64le 8.2.1-6.fc29 updates 431 k libatomic ppc64le 8.2.1-6.fc29 updates 41 k libedit ppc64le 3.1-24.20170329cvs.fc29 fedora 104 k libfabric ppc64le 1.6.1-2.fc29 fedora 442 k libgfortran ppc64le 8.2.1-6.fc29 updates 418 k libgomp ppc64le 8.2.1-6.fc29 updates 211 k libibcm ppc64le 16.2-3.fc28 fedora 17 k libibumad ppc64le 16.2-3.fc28 fedora 26 k libibverbs ppc64le 16.2-3.fc28 fedora 250 k libkcapi ppc64le 1.1.1-16.fc29 fedora 45 k libkcapi-hmaccalc ppc64le 1.1.1-16.fc29 fedora 28 k libmpc ppc64le 1.1.0-2.fc29 fedora 62 k libnl3 ppc64le 3.4.0-6.fc29 fedora 316 k libpcap ppc64le 14:1.9.0-2.fc29 fedora 158 k libquadmath ppc64le 8.2.1-6.fc29 updates 191 k libquadmath-devel ppc64le 8.2.1-6.fc29 updates 43 k librdmacm ppc64le 16.2-3.fc28 fedora 70 k libseccomp ppc64le 2.3.3-3.fc29 fedora 66 k libstdc++-devel ppc64le 8.2.1-6.fc29 updates 2.1 M libubsan ppc64le 8.2.1-6.fc29 updates 169 k libuv ppc64le 1:1.23.2-1.fc29 updates 128 k libxcb ppc64le 1.13.1-1.fc29 fedora 211 k libxcb-devel ppc64le 1.13.1-1.fc29 fedora 1.1 M libxcrypt-devel ppc64le 4.4.2-3.fc29 updates 32 k lmfit ppc64le 6.4-3.fc29 fedora 25 k lua ppc64le 5.3.5-2.fc29 fedora 195 k lua-filesystem ppc64le 1.6.3-9.fc29 fedora 33 k lua-json noarch 1.3.2-10.fc29 fedora 26 k lua-lpeg ppc64le 1.0.1-6.fc29 fedora 67 k lua-posix ppc64le 33.3.1-11.fc29 fedora 174 k lua-term ppc64le 0.07-7.fc29 fedora 15 k m4 ppc64le 1.4.18-9.fc29 fedora 219 k mpich ppc64le 3.2.1-8.fc29 fedora 1.2 M munge ppc64le 0.5.13-2.fc29 fedora 110 k munge-libs ppc64le 0.5.13-2.fc29 fedora 40 k nettle ppc64le 3.4.1rc1-1.fc29 updates 317 k numactl-libs ppc64le 2.0.12-1.fc29 fedora 29 k openblas ppc64le 0.3.3-2.fc29 fedora 27 k openblas-openmp ppc64le 0.3.3-2.fc29 fedora 2.7 M openblas-openmp64 ppc64le 0.3.3-2.fc29 fedora 2.7 M openblas-openmp64_ ppc64le 0.3.3-2.fc29 fedora 2.7 M openblas-serial ppc64le 0.3.3-2.fc29 fedora 2.6 M openblas-serial64 ppc64le 0.3.3-2.fc29 fedora 2.6 M openblas-serial64_ ppc64le 0.3.3-2.fc29 fedora 2.6 M openblas-threads ppc64le 0.3.3-2.fc29 fedora 2.7 M openblas-threads64 ppc64le 0.3.3-2.fc29 fedora 2.7 M openblas-threads64_ ppc64le 0.3.3-2.fc29 fedora 2.7 M openmpi ppc64le 2.1.1-14.fc29 fedora 2.7 M opensm-libs ppc64le 3.3.20-9.fc29 fedora 69 k openssh ppc64le 7.9p1-2.fc29 updates 419 k openssh-clients ppc64le 7.9p1-2.fc29 updates 555 k perl-Carp noarch 1.50-417.fc29 fedora 29 k perl-Data-Dumper ppc64le 2.173-1.fc29 updates 55 k perl-Encode ppc64le 4:2.98-6.fc29 fedora 1.5 M perl-Errno ppc64le 1.29-427.fc29 updates 24 k perl-Exporter noarch 5.73-418.fc29 fedora 31 k perl-File-Path noarch 2.16-1.fc29 fedora 36 k perl-File-Temp noarch 1:0.230.800-2.fc29 fedora 60 k perl-Getopt-Long noarch 1:2.50-417.fc29 fedora 61 k perl-HTTP-Tiny noarch 0.076-1.fc29 fedora 55 k perl-IO ppc64le 1.39-427.fc29 updates 90 k perl-MIME-Base64 ppc64le 3.15-417.fc29 fedora 30 k perl-PathTools ppc64le 3.75-1.fc29 fedora 86 k perl-Pod-Escapes noarch 1:1.07-417.fc29 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-418.fc29 fedora 83 k perl-Pod-Simple noarch 1:3.35-417.fc29 fedora 211 k perl-Pod-Usage noarch 4:1.69-417.fc29 fedora 32 k perl-Scalar-List-Utils ppc64le 3:1.50-417.fc29 fedora 67 k perl-Socket ppc64le 4:2.027-417.fc29 fedora 54 k perl-Storable ppc64le 1:3.11-5.fc29 fedora 95 k perl-Term-ANSIColor noarch 4.06-418.fc29 fedora 44 k perl-Term-Cap noarch 1.17-417.fc29 fedora 22 k perl-Text-ParseWords noarch 3.30-417.fc29 fedora 16 k perl-Text-Tabs+Wrap noarch 2013.0523-417.fc29 fedora 23 k perl-Thread-Queue noarch 3.13-1.fc29 fedora 21 k perl-Time-Local noarch 2:1.280-3.fc29 fedora 31 k perl-Unicode-Normalize ppc64le 1.26-417.fc29 fedora 79 k perl-constant noarch 1.33-418.fc29 fedora 23 k perl-interpreter ppc64le 4:5.28.1-427.fc29 updates 6.4 M perl-libs ppc64le 4:5.28.1-427.fc29 updates 1.6 M perl-macros ppc64le 4:5.28.1-427.fc29 updates 20 k perl-parent noarch 1:0.237-2.fc29 fedora 14 k perl-podlators noarch 1:4.11-3.fc29 fedora 115 k perl-threads ppc64le 1:2.22-417.fc29 fedora 58 k perl-threads-shared ppc64le 1.59-1.fc29 updates 43 k procps-ng ppc64le 3.3.15-4.fc29 fedora 337 k python3 ppc64le 3.7.2-1.fc29 updates 39 k qrencode-libs ppc64le 3.4.4-6.fc29 fedora 58 k rdma-core ppc64le 16.2-3.fc28 fedora 56 k rdma-core-devel ppc64le 16.2-3.fc28 fedora 213 k rhash ppc64le 1.3.5-3.fc29 fedora 139 k rpm-mpi-hooks noarch 5-4.fc29 fedora 10 k systemd ppc64le 239-7.git3bf819c.fc29 updates 3.5 M systemd-pam ppc64le 239-7.git3bf819c.fc29 updates 171 k systemd-udev ppc64le 239-7.git3bf819c.fc29 updates 1.2 M tcl ppc64le 1:8.6.8-2.fc29 fedora 1.2 M tng ppc64le 1.8.2-2.fc29 fedora 138 k torque-libs ppc64le 4.2.10-18.fc29 fedora 141 k xorg-x11-proto-devel noarch 2018.4-2.fc29 fedora 280 k Transaction Summary ================================================================================ Install 160 Packages Total download size: 138 M Installed size: 483 M Downloading Packages: (1/160): bash-completion-2.8-3.fc29.noarch.rpm 4.4 MB/s | 278 kB 00:00 (2/160): fftw-devel-3.3.8-2.fc29.ppc64le.rpm 1.9 MB/s | 130 kB 00:00 (3/160): cmake-3.12.1-1.fc29.ppc64le.rpm 60 MB/s | 7.8 MB 00:00 (4/160): hwloc-1.11.9-2.fc29.ppc64le.rpm 2.6 MB/s | 174 kB 00:00 (5/160): gsl-devel-2.4-7.fc29.ppc64le.rpm 5.3 MB/s | 559 kB 00:00 (6/160): lmfit-devel-6.4-3.fc29.ppc64le.rpm 1.0 MB/s | 35 kB 00:00 (7/160): hwloc-devel-1.11.9-2.fc29.ppc64le.rpm 3.0 MB/s | 210 kB 00:00 (8/160): openblas-devel-0.3.3-2.fc29.ppc64le.rp 2.4 MB/s | 87 kB 00:00 (9/160): mpich-devel-3.2.1-8.fc29.ppc64le.rpm 9.5 MB/s | 629 kB 00:00 (10/160): tng-devel-1.8.2-2.fc29.ppc64le.rpm 1.1 MB/s | 31 kB 00:00 (11/160): openmpi-devel-2.1.1-14.fc29.ppc64le.r 17 MB/s | 1.1 MB 00:00 (12/160): cmake-data-3.12.1-1.fc29.noarch.rpm 49 MB/s | 1.3 MB 00:00 (13/160): cmake-filesystem-3.12.1-1.fc29.ppc64l 4.1 MB/s | 16 kB 00:00 (14/160): cmake-rpm-macros-3.12.1-1.fc29.noarch 3.7 MB/s | 16 kB 00:00 (15/160): jsoncpp-1.8.4-5.fc29.ppc64le.rpm 18 MB/s | 89 kB 00:00 (16/160): libX11-devel-1.6.7-1.fc29.ppc64le.rpm 12 MB/s | 974 kB 00:00 (17/160): rhash-1.3.5-3.fc29.ppc64le.rpm 19 MB/s | 139 kB 00:00 (18/160): fftw-3.3.8-2.fc29.ppc64le.rpm 1.2 MB/s | 47 kB 00:00 (19/160): fftw-libs-3.3.8-2.fc29.ppc64le.rpm 222 kB/s | 8.3 kB 00:00 (20/160): gcc-c++-8.2.1-6.fc29.ppc64le.rpm 60 MB/s | 12 MB 00:00 (21/160): fftw-libs-long-3.3.8-2.fc29.ppc64le.r 9.2 MB/s | 883 kB 00:00 (22/160): fftw-libs-double-3.3.8-2.fc29.ppc64le 5.9 MB/s | 646 kB 00:00 (23/160): automake-1.16.1-5.fc29.noarch.rpm 33 MB/s | 696 kB 00:00 (24/160): fftw-libs-single-3.3.8-2.fc29.ppc64le 10 MB/s | 647 kB 00:00 (25/160): gsl-2.4-7.fc29.ppc64le.rpm 12 MB/s | 996 kB 00:00 (26/160): hwloc-libs-1.11.9-2.fc29.ppc64le.rpm 15 MB/s | 1.6 MB 00:00 (27/160): numactl-libs-2.0.12-1.fc29.ppc64le.rp 373 kB/s | 29 kB 00:00 (28/160): rdma-core-devel-16.2-3.fc28.ppc64le.r 3.1 MB/s | 213 kB 00:00 (29/160): lmfit-6.4-3.fc29.ppc64le.rpm 502 kB/s | 25 kB 00:00 (30/160): mpich-3.2.1-8.fc29.ppc64le.rpm 21 MB/s | 1.2 MB 00:00 (31/160): rpm-mpi-hooks-5-4.fc29.noarch.rpm 411 kB/s | 10 kB 00:00 (32/160): openblas-0.3.3-2.fc29.ppc64le.rpm 382 kB/s | 27 kB 00:00 (33/160): openblas-openmp-0.3.3-2.fc29.ppc64le. 24 MB/s | 2.7 MB 00:00 (34/160): openblas-openmp64-0.3.3-2.fc29.ppc64l 18 MB/s | 2.7 MB 00:00 (35/160): openblas-serial-0.3.3-2.fc29.ppc64le. 23 MB/s | 2.6 MB 00:00 (36/160): openblas-openmp64_-0.3.3-2.fc29.ppc64 15 MB/s | 2.7 MB 00:00 (37/160): openblas-serial64-0.3.3-2.fc29.ppc64l 22 MB/s | 2.6 MB 00:00 (38/160): openblas-serial64_-0.3.3-2.fc29.ppc64 22 MB/s | 2.6 MB 00:00 (39/160): openblas-threads-0.3.3-2.fc29.ppc64le 19 MB/s | 2.7 MB 00:00 (40/160): openblas-threads64-0.3.3-2.fc29.ppc64 18 MB/s | 2.7 MB 00:00 (41/160): tng-1.8.2-2.fc29.ppc64le.rpm 3.5 MB/s | 138 kB 00:00 (42/160): openblas-threads64_-0.3.3-2.fc29.ppc6 21 MB/s | 2.7 MB 00:00 (43/160): libmpc-1.1.0-2.fc29.ppc64le.rpm 4.1 MB/s | 62 kB 00:00 (44/160): openmpi-2.1.1-14.fc29.ppc64le.rpm 18 MB/s | 2.7 MB 00:00 (45/160): libxcb-devel-1.13.1-1.fc29.ppc64le.rp 31 MB/s | 1.1 MB 00:00 (46/160): xorg-x11-proto-devel-2018.4-2.fc29.no 21 MB/s | 280 kB 00:00 (47/160): libX11-1.6.7-1.fc29.ppc64le.rpm 34 MB/s | 634 kB 00:00 (48/160): libX11-xcb-1.6.7-1.fc29.ppc64le.rpm 2.2 MB/s | 11 kB 00:00 (49/160): emacs-filesystem-26.1-6.fc29.noarch.r 2.0 MB/s | 10 kB 00:00 (50/160): libstdc++-devel-8.2.1-6.fc29.ppc64le. 13 MB/s | 2.1 MB 00:00 (51/160): perl-Carp-1.50-417.fc29.noarch.rpm 8.3 MB/s | 29 kB 00:00 (52/160): perl-Exporter-5.73-418.fc29.noarch.rp 8.6 MB/s | 31 kB 00:00 (53/160): autoconf-2.69-28.fc29.noarch.rpm 27 MB/s | 698 kB 00:00 (54/160): perl-File-Path-2.16-1.fc29.noarch.rpm 6.7 MB/s | 36 kB 00:00 (55/160): perl-Getopt-Long-2.50-417.fc29.noarch 15 MB/s | 61 kB 00:00 (56/160): perl-PathTools-3.75-1.fc29.ppc64le.rp 18 MB/s | 86 kB 00:00 (57/160): perl-Thread-Queue-3.13-1.fc29.noarch. 5.1 MB/s | 21 kB 00:00 (58/160): perl-constant-1.33-418.fc29.noarch.rp 8.1 MB/s | 23 kB 00:00 (59/160): perl-threads-2.22-417.fc29.ppc64le.rp 16 MB/s | 58 kB 00:00 (60/160): libibcm-16.2-3.fc28.ppc64le.rpm 576 kB/s | 17 kB 00:00 (61/160): ibacm-16.2-3.fc28.ppc64le.rpm 2.1 MB/s | 85 kB 00:00 (62/160): libibumad-16.2-3.fc28.ppc64le.rpm 603 kB/s | 26 kB 00:00 (63/160): libibverbs-16.2-3.fc28.ppc64le.rpm 4.2 MB/s | 250 kB 00:00 (64/160): gcc-8.2.1-6.fc29.ppc64le.rpm 51 MB/s | 21 MB 00:00 (65/160): rdma-core-16.2-3.fc28.ppc64le.rpm 359 kB/s | 56 kB 00:00 (66/160): librdmacm-16.2-3.fc28.ppc64le.rpm 364 kB/s | 70 kB 00:00 (67/160): libfabric-1.6.1-2.fc29.ppc64le.rpm 6.6 MB/s | 442 kB 00:00 (68/160): opensm-libs-3.3.20-9.fc29.ppc64le.rpm 2.0 MB/s | 69 kB 00:00 (69/160): isl-0.16.1-7.fc29.ppc64le.rpm 63 MB/s | 1.2 MB 00:00 (70/160): torque-libs-4.2.10-18.fc29.ppc64le.rp 3.6 MB/s | 141 kB 00:00 (71/160): libgomp-8.2.1-6.fc29.ppc64le.rpm 40 MB/s | 211 kB 00:00 (72/160): libXau-devel-1.0.8-14.fc29.ppc64le.rp 3.5 MB/s | 14 kB 00:00 (73/160): libxcb-1.13.1-1.fc29.ppc64le.rpm 35 MB/s | 211 kB 00:00 (74/160): libX11-common-1.6.7-1.fc29.noarch.rpm 19 MB/s | 155 kB 00:00 (75/160): m4-1.4.18-9.fc29.ppc64le.rpm 36 MB/s | 219 kB 00:00 (76/160): perl-Text-ParseWords-3.30-417.fc29.no 3.8 MB/s | 16 kB 00:00 (77/160): perl-Pod-Usage-1.69-417.fc29.noarch.r 7.5 MB/s | 32 kB 00:00 (78/160): perl-Scalar-List-Utils-1.50-417.fc29. 14 MB/s | 67 kB 00:00 (79/160): kmod-25-3.fc29.ppc64le.rpm 32 MB/s | 124 kB 00:00 (80/160): libnl3-3.4.0-6.fc29.ppc64le.rpm 6.6 MB/s | 316 kB 00:00 (81/160): munge-0.5.13-2.fc29.ppc64le.rpm 1.8 MB/s | 110 kB 00:00 (82/160): libXau-1.0.8-14.fc29.ppc64le.rpm 9.0 MB/s | 30 kB 00:00 (83/160): perl-Pod-Perldoc-3.28.01-418.fc29.noa 22 MB/s | 83 kB 00:00 (84/160): perl-podlators-4.11-3.fc29.noarch.rpm 27 MB/s | 115 kB 00:00 (85/160): munge-libs-0.5.13-2.fc29.ppc64le.rpm 895 kB/s | 40 kB 00:00 (86/160): groff-base-1.22.3-17.fc29.ppc64le.rpm 54 MB/s | 1.0 MB 00:00 (87/160): perl-Encode-2.98-6.fc29.ppc64le.rpm 56 MB/s | 1.5 MB 00:00 (88/160): cpp-8.2.1-6.fc29.ppc64le.rpm 46 MB/s | 10 MB 00:00 (89/160): perl-File-Temp-0.230.800-2.fc29.noarc 1.3 MB/s | 60 kB 00:00 (90/160): perl-HTTP-Tiny-0.076-1.fc29.noarch.rp 11 MB/s | 55 kB 00:00 (91/160): perl-Pod-Simple-3.35-417.fc29.noarch. 26 MB/s | 211 kB 00:00 (92/160): perl-parent-0.237-2.fc29.noarch.rpm 2.4 MB/s | 14 kB 00:00 (93/160): perl-Term-ANSIColor-4.06-418.fc29.noa 7.0 MB/s | 44 kB 00:00 (94/160): perl-Term-Cap-1.17-417.fc29.noarch.rp 3.5 MB/s | 22 kB 00:00 (95/160): libquadmath-8.2.1-6.fc29.ppc64le.rpm 4.1 MB/s | 191 kB 00:00 (96/160): libgfortran-8.2.1-6.fc29.ppc64le.rpm 6.8 MB/s | 418 kB 00:00 (97/160): perl-MIME-Base64-3.15-417.fc29.ppc64l 1.2 MB/s | 30 kB 00:00 (98/160): libquadmath-devel-8.2.1-6.fc29.ppc64l 1.0 MB/s | 43 kB 00:00 (99/160): perl-Storable-3.11-5.fc29.ppc64le.rpm 21 MB/s | 95 kB 00:00 (100/160): perl-Socket-2.027-417.fc29.ppc64le.r 11 MB/s | 54 kB 00:00 (101/160): perl-Time-Local-1.280-3.fc29.noarch. 8.2 MB/s | 31 kB 00:00 (102/160): perl-Pod-Escapes-1.07-417.fc29.noarc 7.3 MB/s | 19 kB 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MB/s | 67 kB 00:00 (160/160): lua-posix-33.3.1-11.fc29.ppc64le.rpm 1.2 MB/s | 174 kB 00:00 -------------------------------------------------------------------------------- Total 46 MB/s | 138 MB 00:03 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : perl-Exporter-5.73-418.fc29.noarch 1/160 Installing : perl-libs-4:5.28.1-427.fc29.ppc64le 2/160 Installing : perl-Carp-1.50-417.fc29.noarch 3/160 Installing : openblas-0.3.3-2.fc29.ppc64le 4/160 Running scriptlet: openblas-0.3.3-2.fc29.ppc64le 4/160 Installing : libgomp-8.2.1-6.fc29.ppc64le 5/160 Running scriptlet: libgomp-8.2.1-6.fc29.ppc64le 5/160 Installing : perl-Scalar-List-Utils-3:1.50-417.fc29.ppc64le 6/160 Installing : perl-parent-1:0.237-2.fc29.noarch 7/160 Installing : libquadmath-8.2.1-6.fc29.ppc64le 8/160 Running scriptlet: libquadmath-8.2.1-6.fc29.ppc64le 8/160 Installing : libgfortran-8.2.1-6.fc29.ppc64le 9/160 Running scriptlet: libgfortran-8.2.1-6.fc29.ppc64le 9/160 Installing : libmpc-1.1.0-2.fc29.ppc64le 10/160 Installing : fftw-libs-double-3.3.8-2.fc29.ppc64le 11/160 Installing : fftw-libs-long-3.3.8-2.fc29.ppc64le 12/160 Installing : fftw-libs-single-3.3.8-2.fc29.ppc64le 13/160 Installing : 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kernel-headers-4.19.13-300.fc29.ppc64le 128/160 Verifying : libasan-8.2.1-6.fc29.ppc64le 129/160 Verifying : libatomic-8.2.1-6.fc29.ppc64le 130/160 Verifying : libubsan-8.2.1-6.fc29.ppc64le 131/160 Verifying : device-mapper-libs-1.02.154-1.fc29.ppc64le 132/160 Verifying : device-mapper-1.02.154-1.fc29.ppc64le 133/160 Verifying : dracut-049-25.git20181204.fc29.ppc64le 134/160 Verifying : libkcapi-hmaccalc-1.1.1-16.fc29.ppc64le 135/160 Verifying : procps-ng-3.3.15-4.fc29.ppc64le 136/160 Verifying : systemd-udev-239-7.git3bf819c.fc29.ppc64le 137/160 Verifying : libkcapi-1.1.1-16.fc29.ppc64le 138/160 Verifying : perl-interpreter-4:5.28.1-427.fc29.ppc64le 139/160 Verifying : perl-Unicode-Normalize-1.26-417.fc29.ppc64le 140/160 Verifying : perl-libs-4:5.28.1-427.fc29.ppc64le 141/160 Verifying : perl-Errno-1.29-427.fc29.ppc64le 142/160 Verifying : perl-threads-shared-1.59-1.fc29.ppc64le 143/160 Verifying : perl-IO-1.39-427.fc29.ppc64le 144/160 Verifying : openssh-clients-7.9p1-2.fc29.ppc64le 145/160 Verifying : fipscheck-lib-1.5.0-5.fc29.ppc64le 146/160 Verifying : libedit-3.1-24.20170329cvs.fc29.ppc64le 147/160 Verifying : openssh-7.9p1-2.fc29.ppc64le 148/160 Verifying : fipscheck-1.5.0-5.fc29.ppc64le 149/160 Verifying : libuv-1:1.23.2-1.fc29.ppc64le 150/160 Verifying : perl-Data-Dumper-2.173-1.fc29.ppc64le 151/160 Verifying : perl-macros-4:5.28.1-427.fc29.ppc64le 152/160 Verifying : Lmod-7.8.9-1.fc29.ppc64le 153/160 Verifying : lua-5.3.5-2.fc29.ppc64le 154/160 Verifying : lua-filesystem-1.6.3-9.fc29.ppc64le 155/160 Verifying : lua-json-1.3.2-10.fc29.noarch 156/160 Verifying : lua-posix-33.3.1-11.fc29.ppc64le 157/160 Verifying : lua-term-0.07-7.fc29.ppc64le 158/160 Verifying : tcl-1:8.6.8-2.fc29.ppc64le 159/160 Verifying : lua-lpeg-1.0.1-6.fc29.ppc64le 160/160 Installed: bash-completion.noarch 1:2.8-3.fc29 cmake.ppc64le 3.12.1-1.fc29 fftw-devel.ppc64le 3.3.8-2.fc29 gcc-c++.ppc64le 8.2.1-6.fc29 gsl-devel.ppc64le 2.4-7.fc29 hwloc.ppc64le 1.11.9-2.fc29 hwloc-devel.ppc64le 1.11.9-2.fc29 libX11-devel.ppc64le 1.6.7-1.fc29 lmfit-devel.ppc64le 6.4-3.fc29 mpich-devel.ppc64le 3.2.1-8.fc29 openblas-devel.ppc64le 0.3.3-2.fc29 openmpi-devel.ppc64le 2.1.1-14.fc29 tng-devel.ppc64le 1.8.2-2.fc29 Lmod.ppc64le 7.8.9-1.fc29 acl.ppc64le 2.2.53-2.fc29 annobin.ppc64le 8.23-1.fc29 autoconf.noarch 2.69-28.fc29 automake.noarch 1.16.1-5.fc29 cmake-data.noarch 3.12.1-1.fc29 cmake-filesystem.ppc64le 3.12.1-1.fc29 cmake-rpm-macros.noarch 3.12.1-1.fc29 cpp.ppc64le 8.2.1-6.fc29 cryptsetup-libs.ppc64le 2.0.6-1.fc29 dbus.ppc64le 1:1.12.10-1.fc29 dbus-common.noarch 1:1.12.10-1.fc29 dbus-daemon.ppc64le 1:1.12.10-1.fc29 dbus-libs.ppc64le 1:1.12.10-1.fc29 dbus-tools.ppc64le 1:1.12.10-1.fc29 device-mapper.ppc64le 1.02.154-1.fc29 device-mapper-libs.ppc64le 1.02.154-1.fc29 dracut.ppc64le 049-25.git20181204.fc29 emacs-filesystem.noarch 1:26.1-6.fc29 fftw.ppc64le 3.3.8-2.fc29 fftw-libs.ppc64le 3.3.8-2.fc29 fftw-libs-double.ppc64le 3.3.8-2.fc29 fftw-libs-long.ppc64le 3.3.8-2.fc29 fftw-libs-single.ppc64le 3.3.8-2.fc29 fipscheck.ppc64le 1.5.0-5.fc29 fipscheck-lib.ppc64le 1.5.0-5.fc29 gcc.ppc64le 8.2.1-6.fc29 gcc-gfortran.ppc64le 8.2.1-6.fc29 glibc-devel.ppc64le 2.28-26.fc29 glibc-headers.ppc64le 2.28-26.fc29 gnutls.ppc64le 3.6.5-1.fc29 groff-base.ppc64le 1.22.3-17.fc29 gsl.ppc64le 2.4-7.fc29 hwloc-libs.ppc64le 1.11.9-2.fc29 ibacm.ppc64le 16.2-3.fc28 iptables-libs.ppc64le 1.8.0-3.fc29 isl.ppc64le 0.16.1-7.fc29 json-c.ppc64le 0.13.1-3.fc29 jsoncpp.ppc64le 1.8.4-5.fc29 kernel-headers.ppc64le 4.19.13-300.fc29 kmod.ppc64le 25-3.fc29 kmod-libs.ppc64le 25-3.fc29 libX11.ppc64le 1.6.7-1.fc29 libX11-common.noarch 1.6.7-1.fc29 libX11-xcb.ppc64le 1.6.7-1.fc29 libXau.ppc64le 1.0.8-14.fc29 libXau-devel.ppc64le 1.0.8-14.fc29 libargon2.ppc64le 20161029-6.fc29 libasan.ppc64le 8.2.1-6.fc29 libatomic.ppc64le 8.2.1-6.fc29 libedit.ppc64le 3.1-24.20170329cvs.fc29 libfabric.ppc64le 1.6.1-2.fc29 libgfortran.ppc64le 8.2.1-6.fc29 libgomp.ppc64le 8.2.1-6.fc29 libibcm.ppc64le 16.2-3.fc28 libibumad.ppc64le 16.2-3.fc28 libibverbs.ppc64le 16.2-3.fc28 libkcapi.ppc64le 1.1.1-16.fc29 libkcapi-hmaccalc.ppc64le 1.1.1-16.fc29 libmpc.ppc64le 1.1.0-2.fc29 libnl3.ppc64le 3.4.0-6.fc29 libpcap.ppc64le 14:1.9.0-2.fc29 libquadmath.ppc64le 8.2.1-6.fc29 libquadmath-devel.ppc64le 8.2.1-6.fc29 librdmacm.ppc64le 16.2-3.fc28 libseccomp.ppc64le 2.3.3-3.fc29 libstdc++-devel.ppc64le 8.2.1-6.fc29 libubsan.ppc64le 8.2.1-6.fc29 libuv.ppc64le 1:1.23.2-1.fc29 libxcb.ppc64le 1.13.1-1.fc29 libxcb-devel.ppc64le 1.13.1-1.fc29 libxcrypt-devel.ppc64le 4.4.2-3.fc29 lmfit.ppc64le 6.4-3.fc29 lua.ppc64le 5.3.5-2.fc29 lua-filesystem.ppc64le 1.6.3-9.fc29 lua-json.noarch 1.3.2-10.fc29 lua-lpeg.ppc64le 1.0.1-6.fc29 lua-posix.ppc64le 33.3.1-11.fc29 lua-term.ppc64le 0.07-7.fc29 m4.ppc64le 1.4.18-9.fc29 mpich.ppc64le 3.2.1-8.fc29 munge.ppc64le 0.5.13-2.fc29 munge-libs.ppc64le 0.5.13-2.fc29 nettle.ppc64le 3.4.1rc1-1.fc29 numactl-libs.ppc64le 2.0.12-1.fc29 openblas.ppc64le 0.3.3-2.fc29 openblas-openmp.ppc64le 0.3.3-2.fc29 openblas-openmp64.ppc64le 0.3.3-2.fc29 openblas-openmp64_.ppc64le 0.3.3-2.fc29 openblas-serial.ppc64le 0.3.3-2.fc29 openblas-serial64.ppc64le 0.3.3-2.fc29 openblas-serial64_.ppc64le 0.3.3-2.fc29 openblas-threads.ppc64le 0.3.3-2.fc29 openblas-threads64.ppc64le 0.3.3-2.fc29 openblas-threads64_.ppc64le 0.3.3-2.fc29 openmpi.ppc64le 2.1.1-14.fc29 opensm-libs.ppc64le 3.3.20-9.fc29 openssh.ppc64le 7.9p1-2.fc29 openssh-clients.ppc64le 7.9p1-2.fc29 perl-Carp.noarch 1.50-417.fc29 perl-Data-Dumper.ppc64le 2.173-1.fc29 perl-Encode.ppc64le 4:2.98-6.fc29 perl-Errno.ppc64le 1.29-427.fc29 perl-Exporter.noarch 5.73-418.fc29 perl-File-Path.noarch 2.16-1.fc29 perl-File-Temp.noarch 1:0.230.800-2.fc29 perl-Getopt-Long.noarch 1:2.50-417.fc29 perl-HTTP-Tiny.noarch 0.076-1.fc29 perl-IO.ppc64le 1.39-427.fc29 perl-MIME-Base64.ppc64le 3.15-417.fc29 perl-PathTools.ppc64le 3.75-1.fc29 perl-Pod-Escapes.noarch 1:1.07-417.fc29 perl-Pod-Perldoc.noarch 3.28.01-418.fc29 perl-Pod-Simple.noarch 1:3.35-417.fc29 perl-Pod-Usage.noarch 4:1.69-417.fc29 perl-Scalar-List-Utils.ppc64le 3:1.50-417.fc29 perl-Socket.ppc64le 4:2.027-417.fc29 perl-Storable.ppc64le 1:3.11-5.fc29 perl-Term-ANSIColor.noarch 4.06-418.fc29 perl-Term-Cap.noarch 1.17-417.fc29 perl-Text-ParseWords.noarch 3.30-417.fc29 perl-Text-Tabs+Wrap.noarch 2013.0523-417.fc29 perl-Thread-Queue.noarch 3.13-1.fc29 perl-Time-Local.noarch 2:1.280-3.fc29 perl-Unicode-Normalize.ppc64le 1.26-417.fc29 perl-constant.noarch 1.33-418.fc29 perl-interpreter.ppc64le 4:5.28.1-427.fc29 perl-libs.ppc64le 4:5.28.1-427.fc29 perl-macros.ppc64le 4:5.28.1-427.fc29 perl-parent.noarch 1:0.237-2.fc29 perl-podlators.noarch 1:4.11-3.fc29 perl-threads.ppc64le 1:2.22-417.fc29 perl-threads-shared.ppc64le 1.59-1.fc29 procps-ng.ppc64le 3.3.15-4.fc29 python3.ppc64le 3.7.2-1.fc29 qrencode-libs.ppc64le 3.4.4-6.fc29 rdma-core.ppc64le 16.2-3.fc28 rdma-core-devel.ppc64le 16.2-3.fc28 rhash.ppc64le 1.3.5-3.fc29 rpm-mpi-hooks.noarch 5-4.fc29 systemd.ppc64le 239-7.git3bf819c.fc29 systemd-pam.ppc64le 239-7.git3bf819c.fc29 systemd-udev.ppc64le 239-7.git3bf819c.fc29 tcl.ppc64le 1:8.6.8-2.fc29 tng.ppc64le 1.8.2-2.fc29 torque-libs.ppc64le 4.2.10-18.fc29 xorg-x11-proto-devel.noarch 2018.4-2.fc29 Complete! Finish: build setup for gromacs-2019-1.fc29.src.rpm Start: rpmbuild gromacs-2019-1.fc29.src.rpm Building target platforms: ppc64le Building for target ppc64le Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.jN0QOE + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2019 + /usr/bin/gzip -dc /builddir/build/SOURCES/gromacs-2019.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2019 + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/regressiontests-2019.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (gromacs-dssp-path.patch): + echo 'Patch #0 (gromacs-dssp-path.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/gmxana/gmx_do_dssp.cpp Hunk #1 succeeded at 501 (offset 56 lines). Hunk #2 succeeded at 640 (offset 50 lines). Patch #1 (gromacs-issue-2366.patch): + echo 'Patch #1 (gromacs-issue-2366.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/hardware/tests/hardwaretopology.cpp Patch #2 (dd43a2b.diff): + echo 'Patch #2 (dd43a2b.diff):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/gpu_utils/gpu_utils_ocl.cpp Patch #3 (3911191.diff): + echo 'Patch #3 (3911191.diff):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/domdec/partition.cpp + install -Dpm644 /builddir/build/SOURCES/manual-2019.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Wd9gtf + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019 + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 60 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2019/serial ~/build/BUILD/gromacs-2019 + test -z '' + cp -al ../regressiontests-2019 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n '' ++ echo -DGMX_X11=ON ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib64/libX11.so -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - POWER8 (architected), altivec supported -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - vmx vsx -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/serial + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security 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&& /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/lmfit/lmmin.cpp make[2]: Leaving directory 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src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target view_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/3dview.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src 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-I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_test_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/energyreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/simulationdatabase.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/serial/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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directory '/builddir/build/BUILD/gromacs-2019/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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/usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2019/serial' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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'/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2019/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /builddir/build/BUILD/gromacs-2019/src/external/vmd_molfile/vmddlopen.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c 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-DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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'/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_genpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/insert-molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src 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directory '/builddir/build/BUILD/gromacs-2019/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/arraydata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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/builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory 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/builddir/build/BUILD/gromacs-2019/src/gromacs/tools/report-methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -ldl -lrt /usr/lib64/libfftw3f.so -lopenblas -lopenblas -lpthread -fopenmp -lm cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.4.0.0 ../../lib/libgromacs.so.4 ../../lib/libgromacs.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/share/template /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/share/template /builddir/build/BUILD/gromacs-2019/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= Scanning dependencies of target template make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target gmx make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/legacymodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2019/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2019/serial/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.4.0.0 -fopenmp -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target template make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Linking CXX executable ../../bin/gmx cd /builddir/build/BUILD/gromacs-2019/serial/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.4.0.0 -fopenmp /usr/lib64/libX11.so -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich + pushd mpich ~/build/BUILD/gromacs-2019/mpich ~/build/BUILD/gromacs-2019 + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - POWER8 (architected), altivec supported -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - vmx vsx -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/mpich + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs 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'/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o cd 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lmfit_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 2%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/programs /builddir/build/BUILD/gromacs-2019/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 3%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && 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'/builddir/build/BUILD/gromacs-2019/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src 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'/builddir/build/BUILD/gromacs-2019/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && 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'/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/programs /builddir/build/BUILD/gromacs-2019/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Linking CXX executable ../../bin/mdrun_mpich cd /builddir/build/BUILD/gromacs-2019/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_mpich ../../lib/libgromacs_mdrun_mpich.a /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libfftw3f.so -lopenblas -lpthread -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019 + test -n mpich + module unload mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi ~/build/BUILD/gromacs-2019/openmpi ~/build/BUILD/gromacs-2019 + pushd openmpi + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin ++ test -n '' ++ echo + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - POWER8 (architected), altivec supported -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - vmx vsx -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/openmpi + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/lmfit/lmmin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Built target lmfit_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 2%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/programs /builddir/build/BUILD/gromacs-2019/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 3%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/openmpi/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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-I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src 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/usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && 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53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src 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Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectory/energyframe.cpp 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/programs /builddir/build/BUILD/gromacs-2019/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Linking CXX executable ../../bin/mdrun_openmpi cd /builddir/build/BUILD/gromacs-2019/openmpi/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_openmpi ../../lib/libgromacs_mdrun_openmpi.a /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libfftw3f.so -lopenblas -lpthread -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019 + test -n openmpi + module unload mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d ~/build/BUILD/gromacs-2019/serial_d ~/build/BUILD/gromacs-2019 + test -z '' + cp -al ../regressiontests-2019 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n '' ++ echo -DGMX_X11=ON ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib64/libX11.so -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - POWER8 (architected), altivec supported -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - vmx vsx -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/serial_d + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/lmfit/lmmin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Built target lmfit_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target view_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/3dview.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/3dview.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/buttons.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/buttons.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/dialogs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/dialogs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_test_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 9%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/energyreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/simulationdatabase.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 10%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/serial_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src 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object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /builddir/build/BUILD/gromacs-2019/src/external/vmd_molfile/vmddlopen.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/insert-molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/manyautocorrelation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/statistics/statistics.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/arraydata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/report-methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -ldl -lrt /usr/lib64/libfftw3.so -lopenblas -lopenblas -lpthread -fopenmp -lm cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.4.0.0 ../../lib/libgromacs_d.so.4 ../../lib/libgromacs_d.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target gmx make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/share/template /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/share/template /builddir/build/BUILD/gromacs-2019/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= Scanning dependencies of target template make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/legacymodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2019/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Linking CXX executable ../../bin/gmx_d cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d ../../lib/libgromacs_d.so.4.0.0 -fopenmp /usr/lib64/libX11.so -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2019/serial_d/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs_d.so.4.0.0 -fopenmp -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target template make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich_d + pushd mpich_d ~/build/BUILD/gromacs-2019/mpich_d ~/build/BUILD/gromacs-2019 + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - POWER8 (architected), altivec supported -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - vmx vsx -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/mpich_d + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/lmfit/lmmin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Built target lmfit_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 2%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 3%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 3%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/mpich_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/box.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c 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src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && 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'/builddir/build/BUILD/gromacs-2019/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src 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directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory 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CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c 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-fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src 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'/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Linking CXX executable ../../bin/mdrun_mpich_d cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_mpich_d ../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libfftw3.so -lopenblas -lpthread -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019 + test -n mpich + module unload mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi_d + pushd openmpi_d ~/build/BUILD/gromacs-2019/openmpi_d ~/build/BUILD/gromacs-2019 + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 8.2.1 -- The CXX compiler identification is GNU 8.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: 1.11.9 -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "1.11.9", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - IBM -- Detected build CPU brand - POWER8 (architected), altivec supported -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - vmx vsx -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Failed -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019/openmpi_d + /usr/bin/make -O -j2 /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target lmfit_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/lmfit/lmmin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Built target lmfit_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 1%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 2%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019/openmpi_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.2424363 -P /builddir/build/BUILD/gromacs-2019/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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/usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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/usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o 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/usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src 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directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src 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src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c 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src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c 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'/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -I/builddir/build/BUILD/gromacs-2019/src/external/lmfit -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o CMakeFiles/lmfit_objlib.dir/__/external/lmfit/lmmin.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Linking CXX executable ../../bin/mdrun_openmpi_d cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_openmpi_d ../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libfftw3.so -lopenblas -lpthread -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019 + test -n openmpi + module unload mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SvztNh + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le ++ dirname /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le + cd gromacs-2019 + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 26331 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le 'INSTALL=/usr/bin/install -p' -C serial make: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 17%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 21%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/share/template /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/share/template /builddir/build/BUILD/gromacs-2019/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Built target template /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target gmx /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[2]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-spatial.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-do_dssp.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-anadock.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-dump.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-confrms.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-enemat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-select.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-hbond.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-sasa.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-rdf.1 -- Installing: 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Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/futil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/gmxassert.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/init.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/programcontext.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/real.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/smalloc.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/stringutil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/unique_cptr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/confio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/enxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/filetypes.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/gmxfio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/matio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/mtxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/oenv.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/pdbio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/rgb.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/tpxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/trrio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/trxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/xdr_datatype.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/xtcio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/xvgr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/compat/make_unique.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/gmxana/gstat.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/abstractdata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/analysisdata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/arraydata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/dataframe.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/datamodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/average.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/displacement.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/histogram.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/lifetime.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/plot.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/nbsearch.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/indexutil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/position.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selection.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectioncollection.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionenums.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionoption.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionoptionbehavior.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionoptionmanager.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx-completion-gmx.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL2V0Yy9tb2R1bGVmaWxlcy9tcGkvbXBpY2gtcHBjNjRsZSIsWyJmdWxsTmFtZSJdPSJtcGkvbXBpY2gtcHBjNjRsZSIsWyJsb2FkT3JkZXIiXT0xLHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Im1waS9tcGljaC1wcGM2NGxlIix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9tb2R1bGVm ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le 'INSTALL=/usr/bin/install -p' -C mpich make: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 23%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 24%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/programs /builddir/build/BUILD/gromacs-2019/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/programs /builddir/build/BUILD/gromacs-2019/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/mdrun_mpich -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/gmx-completion-mdrun_mpich.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' + test -n mpich + module unload mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le 'INSTALL=/usr/bin/install -p' -C openmpi make: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 23%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 24%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/programs /builddir/build/BUILD/gromacs-2019/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/programs /builddir/build/BUILD/gromacs-2019/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/mdrun_openmpi -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' + test -n openmpi + module unload mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le 'INSTALL=/usr/bin/install -p' -C serial_d make: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 21%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/share/template /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/share/template /builddir/build/BUILD/gromacs-2019/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Built target template /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target gmx /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[2]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/options/repeatingsection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/options/valuestore.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/pbcutil/ishift.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/pbcutil/rmpbc.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/exponentialdistribution.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/gammadistribution.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/normaldistribution.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/seed.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/tabulatednormaldistribution.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/threefry.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/uniformintdistribution.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/random/uniformrealdistribution.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/restraint/restraintpotential.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/timing/wallcycle.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/timing/walltime_accounting.h -- Up-to-date: 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Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/init.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/enxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/gmxfio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/matio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/mtxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/rgb.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/trrio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/xdr_datatype.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/xtcio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/fileio/xvgr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/compat/make_unique.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/gmxana/gstat.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx_d -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx-completion-gmx_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le 'INSTALL=/usr/bin/install -p' -C mpich_d make: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 23%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 24%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/mdrun_mpich_d -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/gmx-completion-mdrun_mpich_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' + test -n mpich + module unload mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le 'INSTALL=/usr/bin/install -p' -C openmpi_d make: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 23%] Built target lmfit_objlib /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 24%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/mdrun_openmpi_d -- Installing: /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' + test -n openmpi + module unload mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le ~/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le ~/build/BUILD/gromacs-2019 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-mdrun_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-mdrun_mpich_d.bash .//usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2019-1.fc29 --unique-debug-suffix -2019-1.fc29.ppc64le --unique-debug-src-base gromacs-2019-1.fc29.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2019 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/mdrun_openmpi_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/libgromacs_d.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/libgromacs_d.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/mdrun_openmpi_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/mdrun_openmpi extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/bin/mdrun_openmpi explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/mdrun_mpich_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/mdrun_mpich_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/mdrun_mpich extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/bin/mdrun_mpich explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/libgromacs.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/libgromacs.so.4.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx extracting debug info from /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/bin/gmx /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. cpio: serial/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory 44155 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Zd3lJv + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019 + . /etc/profile.d/modules.sh ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' +++ /usr/bin/ps -p 29284 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ . /usr/share/lmod/lmod/init/sh +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + test -n '' + xLD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64 + make -C serial VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/googletest /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/external/googletest /builddir/build/BUILD/gromacs-2019/serial/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Built target mdrun_test_objlib make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 0%] Built target lmfit_objlib make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 13%] Built target libgromacs_generated make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Built target libgromacs_external make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs /builddir/build/BUILD/gromacs-2019/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= [ 16%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Built target mdrun_objlib make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Built target onlinehelp-test-shared make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". 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Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 16%] Built target mdrunutility-test-shared make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/datatest.cpp [ 16%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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src/testutils/CMakeFiles/testutils.dir/loggertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o 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Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory 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Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/mimic.cpp [ 78%] Building CXX 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/refdata_tests.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/multisim.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/multisimtest.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/pmetest.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/testasserts_tests.cpp [ 78%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/replicaexchange.cpp [ 79%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && 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../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 79%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Built target mdrun-mpi-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends 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Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Built target testutils-test make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests/electricfield.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/mdebin.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/settle.cpp [ 79%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Built target applied-forces-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests/bonded.cpp [ 79%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Built target listed-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 79%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroups.cpp [ 79%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroupscog.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 80%] Built target mdlib-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/hashedmap.cpp [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineparser.cpp [ 80%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 80%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 80%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/pargs.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmegathertest.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Built target commandline-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests/fft.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesolvetest.cpp [ 81%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/gputest.cpp [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 81%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/cpuinfo.cpp [ 81%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/hardwaretopology.cpp [ 81%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 81%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/dofit.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/functions.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/invertmatrix.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/paddedvector.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/vectypes.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Built target math-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Built target mdrunutility-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 82%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Built target mdrunutility-mpi-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 83%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpformat.cpp [ 83%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 83%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/abstractoptionstorage.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoption.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoptionmanager.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/option.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/optionsassigner.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/repeatingsection.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/timeunitmanager.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/treesupport.cpp [ 84%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Built target options-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/exponentialdistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/gammadistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/normaldistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/seed.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/threefry.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformintdistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformrealdistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 86%] Built target random-test [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmetestcommon.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests/manager.cpp [ 87%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Built target ewald-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". [ 87%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests/splinetable.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Built target restraintpotential-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests/usergpuids.cpp [ 87%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 87%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/alignedallocator.cpp [ 88%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 88%] Built target table-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/confio.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/filemd5.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/readinp.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/tngio.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 88%] Built target fileio-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 88%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests/pull.cpp [ 88%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 88%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/bias.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/biasstate.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/grid.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Built target awh-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend [ 89%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/arrayref.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/base.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_vector_operations.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_memory.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_integer.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_util.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Built target simd-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/serial 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/pointers.cpp [ 91%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Built target compat-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/entropy.cpp [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/gmx_traj.cpp [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/gmx_trjconv.cpp [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/gmx_msd.cpp [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Built target gmxana-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make 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Scanning dependencies of target pdb2gmx-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 91%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/pdb2gmx-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Built target pdb2gmx-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 91%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 92%] Built target gmxpreprocess-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 92%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 92%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 92%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/expfit.cpp [ 93%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Built target correlations-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/arraydata.cpp [ 93%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/average.cpp [ 93%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/histogram.cpp [ 93%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/lifetime.cpp [ 93%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 93%] Built target analysisdata-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/indexutil.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/nbsearch.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd 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-funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/poscalc.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/selectioncollection.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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-DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/toputils.cpp [ 94%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Built target selection-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 94%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/rdf.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/select.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/trajectoryanalysis-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Built target trajectoryanalysis-test make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd 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Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 95%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/tests/report-methods.cpp [ 95%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Built target tool-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 95%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/minimize.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/rerun.cpp [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 96%] Built target mdrun-non-integrator-test make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Scanning dependencies of target legacy-mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/tpitest.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" 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CXX executable ../../../../bin/legacy-mdrun-test cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Built target legacy-mdrun-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial 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Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/interactiveMD.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/swapcoords.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/termination.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectory_writing.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [ 98%] Built target mdrun-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/gmxregex.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/mutex.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/path.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/physicalnodecommunicator.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/stringutil.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textreader.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textwriter.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/typetraits.cpp [100%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019/serial/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target utility-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019/serial Start 1: TestUtilsUnitTests 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.11 sec Start 2: TestUtilsMpiUnitTests 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.02 sec Start 3: MdlibUnitTest 3/40 Test #3: MdlibUnitTest .................... Passed 0.03 sec Start 4: AppliedForcesUnitTest 4/40 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec Start 5: ListedForcesTest 5/40 Test #5: ListedForcesTest ................. Passed 0.06 sec Start 6: CommandLineUnitTests 6/40 Test #6: CommandLineUnitTests ............. Passed 0.04 sec Start 7: DomDecTests 7/40 Test #7: DomDecTests ...................... Passed 0.01 sec Start 8: EwaldUnitTests 8/40 Test #8: EwaldUnitTests ................... Passed 1.49 sec Start 9: FFTUnitTests 9/40 Test #9: FFTUnitTests ..................... Passed 0.06 sec Start 10: GpuUtilsUnitTests 10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.01 sec Start 11: HardwareUnitTests 11/40 Test #11: HardwareUnitTests ................ Passed 0.03 sec Start 12: MathUnitTests 12/40 Test #12: MathUnitTests .................... Passed 0.04 sec Start 13: MdrunUtilityUnitTests 13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.02 sec Start 14: MdrunUtilityMpiUnitTests 14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.94 sec Start 15: OnlineHelpUnitTests 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.04 sec Start 16: OptionsUnitTests 16/40 Test #16: OptionsUnitTests ................. Passed 0.06 sec Start 17: RandomUnitTests 17/40 Test #17: RandomUnitTests .................. Passed 0.12 sec Start 18: RestraintTests 18/40 Test #18: RestraintTests ................... Passed 0.01 sec Start 19: TableUnitTests 19/40 Test #19: TableUnitTests ................... Passed 0.12 sec Start 20: TaskAssignmentUnitTests 20/40 Test #20: TaskAssignmentUnitTests .......... Passed 0.01 sec Start 21: UtilityUnitTests 21/40 Test #21: UtilityUnitTests ................. Passed 0.20 sec Start 22: UtilityMpiUnitTests 22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.01 sec Start 23: FileIOTests 23/40 Test #23: FileIOTests ...................... Passed 0.04 sec Start 24: PullTest 24/40 Test #24: PullTest ......................... Passed 0.01 sec Start 25: AwhTest 25/40 Test #25: AwhTest .......................... Passed 0.02 sec Start 26: SimdUnitTests 26/40 Test #26: SimdUnitTests .................... Passed 0.01 sec Start 27: CompatibilityHelpersTests 27/40 Test #27: CompatibilityHelpersTests ........ Passed 0.01 sec Start 28: GmxAnaTest 28/40 Test #28: GmxAnaTest ....................... Passed 0.10 sec Start 29: GmxPreprocessTests 29/40 Test #29: GmxPreprocessTests ............... Passed 0.53 sec Start 30: Pdb2gmxTest 30/40 Test #30: Pdb2gmxTest ...................... Passed 17.22 sec Start 31: CorrelationsTest 31/40 Test #31: CorrelationsTest ................. Passed 0.07 sec Start 32: AnalysisDataUnitTests 32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.14 sec Start 33: SelectionUnitTests 33/40 Test #33: SelectionUnitTests ............... Passed 0.55 sec Start 34: TrajectoryAnalysisUnitTests 34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 0.80 sec Start 35: EnergyAnalysisUnitTests 35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.06 sec Start 36: ToolUnitTests 36/40 Test #36: ToolUnitTests .................... Passed 0.24 sec Start 37: MdrunTests 37/40 Test #37: MdrunTests ....................... Passed 1.87 sec Start 38: MdrunNonIntegratorTests 38/40 Test #38: MdrunNonIntegratorTests .......... Passed 2.66 sec Start 39: LegacyGroupSchemeMdrunTests 39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.32 sec Start 40: MdrunMpiTests 40/40 Test #40: MdrunMpiTests .................... Passed 0.83 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: GTest = 29.94 sec*proc (40 tests) IntegrationTest = 5.79 sec*proc (5 tests) MpiTest = 1.97 sec*proc (3 tests) SlowTest = 17.22 sec*proc (1 test) UnitTest = 6.94 sec*proc (34 tests) Total Test time (real) = 30.56 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/tests /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/tests /builddir/build/BUILD/gromacs-2019/serial/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019/serial/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' cd /builddir/build/BUILD/gromacs-2019/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' make: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + test -n mpich + xLD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/lib + LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/lib + make -C mpich VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 0%] Built target lmfit_objlib make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 1%] Built target libgromacs_external make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend [ 19%] Built target libgromacs_generated make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/googletest /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest /builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' Scanning dependencies of target onlinehelp-test-shared [ 19%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build cd /builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/src/gmock-all.cc make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Built target onlinehelp-test-shared make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 20%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 21%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/src/gtest-all.cc make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 21%] Built target mdrunutility-test-shared make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 81%] Built target libgromacs [ 81%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019/mpich/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 81%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/testutils /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include 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Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/xvgtest.cpp [ 83%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/tinyxml2/tinyxml2.cpp [ 83%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Built target testutils make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/mpitest.cpp [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/make_unique.cpp [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/pointers.cpp [ 83%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 83%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/interactivetest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Built target compat-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 84%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 84%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/mdebin.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/settle.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/shake.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/simulationsignal.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroups.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroupscog.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Built target mdlib-test make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests/electricfield.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Built target applied-forces-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/mpich 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests/bonded.cpp [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Built target listed-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineparser.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/pargs.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 86%] Built target commandline-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 86%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmegathertest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesolvetest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmetestcommon.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Built target ewald-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 87%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests/fft.cpp [ 88%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/gputest.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/cpuinfo.cpp [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/hardwaretopology.cpp [ 89%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/dofit.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/functions.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/invertmatrix.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/paddedvector.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/vectypes.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Built target math-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/refdata_tests.cpp [ 90%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/testasserts_tests.cpp [ 90%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/xvgtest_tests.cpp [ 90%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 90%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich.a ../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Built target testutils-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-test [ 90%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Built target mdrunutility-mpi-test [ 90%] Built target mdrunutility-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpformat.cpp Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/abstractoptionstorage.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Built target onlinehelp-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/exponentialdistribution.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoption.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/gammadistribution.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoptionmanager.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/normaldistribution.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/option.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/seed.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/optionsassigner.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/threefry.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/repeatingsection.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformintdistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformrealdistribution.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/timeunitmanager.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 91%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests/manager.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/treesupport.cpp [ 91%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 92%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests/splinetable.cpp [ 93%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 93%] Built target options-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests/usergpuids.cpp [ 94%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp [ 94%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 94%] Built target table-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/alignedallocator.cpp [ 95%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Built target utility-mpi-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/confio.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/filemd5.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/readinp.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/tngio.cpp [ 95%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Built target fileio-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests/pull.cpp [ 95%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/bias.cpp [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/biasstate.cpp [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 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/builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/grid.cpp [ 95%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Built target awh-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/base.cpp [ 95%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_vector_operations.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_math.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_memory.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_integer.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_math.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_util.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_math.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [ 97%] Built target simd-test [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/arrayref.cpp cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask32.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask64.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask128.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/gmxregex.cpp [ 97%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/mutex.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/path.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/stringutil.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textreader.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/typetraits.cpp [ 98%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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-funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target utility-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019/mpich Start 1: TestUtilsUnitTests 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.22 sec Start 2: TestUtilsMpiUnitTests 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.15 sec Start 3: MdlibUnitTest 3/27 Test #3: MdlibUnitTest .................... Passed 0.03 sec Start 4: AppliedForcesUnitTest 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec Start 5: ListedForcesTest 5/27 Test #5: ListedForcesTest ................. Passed 0.01 sec Start 6: CommandLineUnitTests 6/27 Test #6: CommandLineUnitTests ............. Passed 0.02 sec Start 7: DomDecTests 7/27 Test #7: DomDecTests ...................... Passed 0.01 sec Start 8: EwaldUnitTests 8/27 Test #8: EwaldUnitTests ................... Passed 0.40 sec Start 9: FFTUnitTests 9/27 Test #9: FFTUnitTests ..................... Passed 0.03 sec Start 10: GpuUtilsUnitTests 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.02 sec Start 11: HardwareUnitTests 11/27 Test #11: HardwareUnitTests ................ Passed 0.03 sec Start 12: MathUnitTests 12/27 Test #12: MathUnitTests .................... Passed 0.02 sec Start 13: MdrunUtilityUnitTests 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.01 sec Start 14: MdrunUtilityMpiUnitTests 14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.89 sec Start 15: OnlineHelpUnitTests 15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.01 sec Start 16: OptionsUnitTests 16/27 Test #16: OptionsUnitTests ................. Passed 0.02 sec Start 17: RandomUnitTests 17/27 Test #17: RandomUnitTests .................. Passed 0.02 sec Start 18: RestraintTests 18/27 Test #18: RestraintTests ................... Passed 0.01 sec Start 19: TableUnitTests 19/27 Test #19: TableUnitTests ................... Passed 0.12 sec Start 20: TaskAssignmentUnitTests 20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.01 sec Start 21: UtilityUnitTests 21/27 Test #21: UtilityUnitTests ................. Passed 0.05 sec Start 22: UtilityMpiUnitTests 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.30 sec Start 23: FileIOTests 23/27 Test #23: FileIOTests ...................... Passed 0.03 sec Start 24: PullTest 24/27 Test #24: PullTest ......................... Passed 0.01 sec Start 25: AwhTest 25/27 Test #25: AwhTest .......................... Passed 0.02 sec Start 26: SimdUnitTests 26/27 Test #26: SimdUnitTests .................... Passed 0.02 sec Start 27: CompatibilityHelpersTests 27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.01 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: GTest = 3.46 sec*proc (27 tests) MpiTest = 2.34 sec*proc (3 tests) UnitTest = 3.46 sec*proc (27 tests) Total Test time (real) = 3.62 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/tests /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/tests /builddir/build/BUILD/gromacs-2019/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019/mpich/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' cd /builddir/build/BUILD/gromacs-2019/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' make: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich' + test -n mpich + module unload mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + test -n openmpi + xLD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/lib + LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/lib + make -C openmpi VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= [ 0%] Built target lmfit_objlib make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 1%] Built target libgromacs_external make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Built target libgromacs_generated make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/googletest /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest /builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 19%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/src/gmock-all.cc Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Built target onlinehelp-test-shared make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 20%] Built target mdrunutility-test-shared make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 21%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/src/gtest-all.cc make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 81%] Built target libgromacs [ 81%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019/openmpi/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 81%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/conftest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/conftest.cpp cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem 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'/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Built target testutils make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender 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Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/pointers.cpp [ 83%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi.a ../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 83%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend [ 83%] Built target compat-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 84%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/settle.cpp [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/refdata_tests.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/shake.cpp [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/simulationsignal.cpp [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/xvgtest_tests.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi.a ../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Built target testutils-test make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests/electricfield.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroupscog.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 85%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Built target applied-forces-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests/bonded.cpp [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Built target listed-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/openmpi 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Built target mdlib-test [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineparser.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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/usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 85%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/hashedmap.cpp [ 86%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 86%] Built target commandline-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". 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Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 87%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 87%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 87%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests/fft.cpp [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmegathertest.cpp [ 88%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/gputest.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" 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/builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesolvetest.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmetestcommon.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/cpuinfo.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" 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/builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/hardwaretopology.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Built target ewald-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 88%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 89%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Built target hardware-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/dofit.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/functions.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 90%] Built target mdrunutility-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 90%] Built target mdrunutility-mpi-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpformat.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 90%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/abstractoptionstorage.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoption.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoptionmanager.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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-DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/optionsassigner.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/repeatingsection.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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-fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/treesupport.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Built target options-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/gammadistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/normaldistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/seed.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/threefry.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformintdistribution.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformrealdistribution.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 92%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests/manager.cpp [ 92%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests/splinetable.cpp [ 93%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 93%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/taskassignment/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/openmpi 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 94%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/openmpi 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/arrayref.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask32.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask128.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/logger.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/path.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textreader.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Built target utility-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/confio.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/filemd5.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/readinp.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/tngio.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Built target fileio-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/bias.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/biasstate.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd 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-std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/grid.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Built target awh-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". 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Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/base.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_vector_operations.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_memory.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_integer.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_vector_operations.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_math.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_util.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_math.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target simd-test [100%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o [100%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/paddedvector.cpp cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/invertmatrix.cpp [100%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/vectypes.cpp [100%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target math-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019/openmpi Start 1: TestUtilsUnitTests 1/27 Test #1: TestUtilsUnitTests ............... Passed 1.41 sec Start 2: TestUtilsMpiUnitTests 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.10 sec Start 3: MdlibUnitTest 3/27 Test #3: MdlibUnitTest .................... Passed 0.20 sec Start 4: AppliedForcesUnitTest 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.06 sec Start 5: ListedForcesTest 5/27 Test #5: ListedForcesTest ................. Passed 0.06 sec Start 6: CommandLineUnitTests 6/27 Test #6: CommandLineUnitTests ............. Passed 0.06 sec Start 7: DomDecTests 7/27 Test #7: DomDecTests ...................... Passed 0.06 sec Start 8: EwaldUnitTests 8/27 Test #8: EwaldUnitTests ................... Passed 0.29 sec Start 9: FFTUnitTests 9/27 Test #9: FFTUnitTests ..................... Passed 0.08 sec Start 10: GpuUtilsUnitTests 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.06 sec Start 11: HardwareUnitTests 11/27 Test #11: HardwareUnitTests ................ Passed 0.07 sec Start 12: MathUnitTests 12/27 Test #12: MathUnitTests .................... Passed 0.06 sec Start 13: MdrunUtilityUnitTests 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.07 sec Start 14: MdrunUtilityMpiUnitTests 14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.07 sec Start 15: OnlineHelpUnitTests 15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.06 sec Start 16: OptionsUnitTests 16/27 Test #16: OptionsUnitTests ................. Passed 0.06 sec Start 17: RandomUnitTests 17/27 Test #17: RandomUnitTests .................. Passed 0.07 sec Start 18: RestraintTests 18/27 Test #18: RestraintTests ................... Passed 0.06 sec Start 19: TableUnitTests 19/27 Test #19: TableUnitTests ................... Passed 0.17 sec Start 20: TaskAssignmentUnitTests 20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.06 sec Start 21: UtilityUnitTests 21/27 Test #21: UtilityUnitTests ................. Passed 0.08 sec Start 22: UtilityMpiUnitTests 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.31 sec Start 23: FileIOTests 23/27 Test #23: FileIOTests ...................... Passed 0.07 sec Start 24: PullTest 24/27 Test #24: PullTest ......................... Passed 0.06 sec Start 25: AwhTest 25/27 Test #25: AwhTest .......................... Passed 0.07 sec Start 26: SimdUnitTests 26/27 Test #26: SimdUnitTests .................... Passed 0.06 sec Start 27: CompatibilityHelpersTests 27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.06 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: GTest = 4.85 sec*proc (27 tests) MpiTest = 1.48 sec*proc (3 tests) UnitTest = 4.85 sec*proc (27 tests) Total Test time (real) = 5.08 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/tests /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/tests /builddir/build/BUILD/gromacs-2019/openmpi/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019/openmpi/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' cd /builddir/build/BUILD/gromacs-2019/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' make: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi' + test -n openmpi + module unload mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + test -n '' + xLD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64 + make -C serial_d VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/googletest /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest /builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Built target mdrun_test_objlib make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build [ 0%] Built target lmfit_objlib make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 0%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/src/gmock-all.cc make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 13%] Built target libgromacs_generated make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Built target libgromacs_external [ 16%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/src/gtest-all.cc make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Built target mdrun_objlib make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Built target onlinehelp-test-shared make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 16%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Built target mdrunutility-test-shared [ 17%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019/serial_d/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Built target gmock Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 17%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/datatest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 76%] Built target libgromacs [ 76%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/mock_datamodule.cpp make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 76%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/textblockmatchers.cpp [ 78%] Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/xvgtest.cpp [ 78%] Building CXX object src/testutils/CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/tinyxml2/tinyxml2.cpp [ 78%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Built target testutils make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/minimize.cpp [ 78%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/interactivetest.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/refdata_tests.cpp [ 78%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/testasserts_tests.cpp [ 79%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/xvgtest_tests.cpp [ 79%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 79%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Built target testutils-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/mdebin.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/settle.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/shake.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/simulationsignal.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroups.cpp [ 79%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroupscog.cpp [ 80%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 80%] Built target mdlib-test make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 80%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests/electricfield.cpp [ 80%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 80%] Built target applied-forces-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 80%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests/bonded.cpp [ 80%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 80%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 80%] Built target listed-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 80%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineparser.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/pargs.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 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CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Built target commandline-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee 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Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmebsplinetest.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmegathertest.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesolvetest.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmetestcommon.cpp [ 81%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 82%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Built target ewald-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests/fft.cpp [ 82%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/gputest.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 82%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/mimic.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/cpuinfo.cpp [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/hardwaretopology.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/multisim.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/multisimtest.cpp [ 82%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/pmetest.cpp [ 82%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 82%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/replicaexchange.cpp [ 82%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 82%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 82%] Built target mdrun-mpi-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/functions.cpp Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/invertmatrix.cpp [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 83%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/paddedvector.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Built target mdrunutility-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 83%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 84%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 84%] Built target mdrunutility-mpi-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpformat.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 84%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 85%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/vectypes.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/abstractoptionstorage.cpp [ 85%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Built target math-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/exponentialdistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/gammadistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/normaldistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/seed.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 85%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/threefry.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformintdistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformrealdistribution.cpp [ 86%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests/manager.cpp [ 86%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests/splinetable.cpp [ 86%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/DependInfo.cmake" is newer than 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Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 86%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/alignedallocator.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/arrayref.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask64.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask128.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" 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87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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/builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/gmxregex.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/logger.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/path.cpp [ 87%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/stringutil.cpp [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textwriter.cpp [ 88%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem 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-c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 88%] Built target utility-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/confio.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/filemd5.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/readinp.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/tngio.cpp [ 88%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 88%] Built target fileio-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 88%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests/pull.cpp [ 88%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 88%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/bias.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/biasstate.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/grid.cpp [ 89%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Built target awh-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoption.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/base.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd.cpp [ 89%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoptionmanager.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 89%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_vector_operations.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_memory.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_integer.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/option.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/optionsassigner.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_util.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/repeatingsection.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_math.cpp [ 90%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/timeunitmanager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Built target simd-test make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/make_unique.cpp [ 91%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/pointers.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/treesupport.cpp [ 91%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Built target compat-test make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend.internal". Scanning dependencies of target gmxana-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/entropy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/entropy.cpp [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/gmx_traj.cpp [ 91%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/gmx_trjconv.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 92%] Built target options-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/depend.internal". Scanning dependencies of target pdb2gmx-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/pdb2gmx.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/pdb2gmx-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdb2gmx-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pdb2gmx-test.dir/pdb2gmx.cpp.o CMakeFiles/pdb2gmx-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pdb2gmx-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 92%] Built target pdb2gmx-test make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend.internal". Scanning dependencies of target gmxpreprocess-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/genconf.cpp [ 92%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp [ 93%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/readir.cpp [ 93%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxpreprocess/tests/solvate.cpp [ 93%] Building CXX object src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/gmxpreprocess-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Built target gmxpreprocess-test make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend.internal". Scanning dependencies of target correlations-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 93%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/autocorr.cpp [ 93%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp [ 93%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/correlationdataset.cpp [ 93%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/correlationfunctions/tests/expfit.cpp [ 94%] Building CXX object src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/correlations-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Built target correlations-test make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend.internal". Scanning dependencies of target analysisdata-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/analysisdata/tests/lifetime.cpp [ 94%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/analysisdata-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 94%] Built target analysisdata-test make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend.internal". Scanning dependencies of target selection-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/indexutil.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/nbsearch.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/poscalc.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/selectioncollection.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/selectionoption.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/selection/tests/toputils.cpp [ 95%] Building CXX object src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 95%] Linking CXX executable ../../../../bin/selection-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Built target selection-test make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend.internal". Scanning dependencies of target trajectoryanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/moduletest.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && 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CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/clustsize.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/angle.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/distance.cpp [ 95%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/freevolume.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/pairdist.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/rdf.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/sasa.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/select.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/topologyinformation.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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/builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/trajectory.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/trajectoryanalysis/tests/unionfind.cpp [ 96%] Building CXX object src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src 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CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/topologyinformation.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 96%] Built target trajectoryanalysis-test make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make 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Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend.internal". Scanning dependencies of target energyanalysis-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 96%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/energyanalysis/tests/legacyenergy.cpp [ 96%] Building CXX object src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/energyanalysis-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 96%] Built target energyanalysis-test make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/CMakeFiles/tool-test.dir/depend.internal". Scanning dependencies of target tool-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build.make src/gromacs/tools/tests/CMakeFiles/tool-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 96%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tools/tests/report-methods.cpp [ 96%] Building CXX object src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/tool-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/tools/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/tool-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tool-test.dir/report-methods.cpp.o CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/tool-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 96%] Built target tool-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/depend.internal". Scanning dependencies of target mdrun-non-integrator-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 96%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/minimize.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/rerun.cpp [ 97%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/mdrun-non-integrator-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-non-integrator-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-non-integrator-test.dir/minimize.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/rerun.cpp.o CMakeFiles/mdrun-non-integrator-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-non-integrator-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 97%] Built target mdrun-non-integrator-test make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/depend.internal". Scanning dependencies of target legacy-mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/tpitest.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/legacy-mdrun-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/legacy-mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/legacy-mdrun-test.dir/tpitest.cpp.o CMakeFiles/legacy-mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/legacy-mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Built target legacy-mdrun-test make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend.internal". Scanning dependencies of target mdrun-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/compressed_x_output.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/grompp.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/initialconstraints.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/interactiveMD.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/pmetest.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/swapcoords.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/termination.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/termination.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/trajectory_writing.cpp [ 98%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/programs/mdrun/tests/mimic.cpp [100%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/mdrun-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/mimic.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target mdrun-test [100%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o [100%] Building CXX object src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gmxana/tests/gmx_msd.cpp cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/serial_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/gmxana-test cd /builddir/build/BUILD/gromacs-2019/serial_d/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmxana-test.dir/entropy.cpp.o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/gmx_msd.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target gmxana-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019/serial_d Start 1: TestUtilsUnitTests 1/40 Test #1: TestUtilsUnitTests ............... Passed 0.32 sec Start 2: TestUtilsMpiUnitTests 2/40 Test #2: TestUtilsMpiUnitTests ............ Passed 0.07 sec Start 3: MdlibUnitTest 3/40 Test #3: MdlibUnitTest .................... Passed 0.06 sec Start 4: AppliedForcesUnitTest 4/40 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec Start 5: ListedForcesTest 5/40 Test #5: ListedForcesTest ................. Passed 0.03 sec Start 6: CommandLineUnitTests 6/40 Test #6: CommandLineUnitTests ............. Passed 0.05 sec Start 7: DomDecTests 7/40 Test #7: DomDecTests ...................... Passed 0.01 sec Start 8: EwaldUnitTests 8/40 Test #8: EwaldUnitTests ................... Passed 0.48 sec Start 9: FFTUnitTests 9/40 Test #9: FFTUnitTests ..................... Passed 0.04 sec Start 10: GpuUtilsUnitTests 10/40 Test #10: GpuUtilsUnitTests ................ Passed 0.01 sec Start 11: HardwareUnitTests 11/40 Test #11: HardwareUnitTests ................ Passed 0.03 sec Start 12: MathUnitTests 12/40 Test #12: MathUnitTests .................... Passed 0.05 sec Start 13: MdrunUtilityUnitTests 13/40 Test #13: MdrunUtilityUnitTests ............ Passed 0.01 sec Start 14: MdrunUtilityMpiUnitTests 14/40 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.71 sec Start 15: OnlineHelpUnitTests 15/40 Test #15: OnlineHelpUnitTests .............. Passed 0.02 sec Start 16: OptionsUnitTests 16/40 Test #16: OptionsUnitTests ................. Passed 0.02 sec Start 17: RandomUnitTests 17/40 Test #17: RandomUnitTests .................. Passed 0.02 sec Start 18: RestraintTests 18/40 Test #18: RestraintTests ................... Passed 0.01 sec Start 19: TableUnitTests 19/40 Test #19: TableUnitTests ................... Passed 0.34 sec Start 20: TaskAssignmentUnitTests 20/40 Test #20: TaskAssignmentUnitTests .......... Passed 0.01 sec Start 21: UtilityUnitTests 21/40 Test #21: UtilityUnitTests ................. Passed 0.07 sec Start 22: UtilityMpiUnitTests 22/40 Test #22: UtilityMpiUnitTests .............. Passed 0.03 sec Start 23: FileIOTests 23/40 Test #23: FileIOTests ...................... Passed 0.03 sec Start 24: PullTest 24/40 Test #24: PullTest ......................... Passed 0.01 sec Start 25: AwhTest 25/40 Test #25: AwhTest .......................... Passed 0.02 sec Start 26: SimdUnitTests 26/40 Test #26: SimdUnitTests .................... Passed 0.01 sec Start 27: CompatibilityHelpersTests 27/40 Test #27: CompatibilityHelpersTests ........ Passed 0.01 sec Start 28: GmxAnaTest 28/40 Test #28: GmxAnaTest ....................... Passed 0.09 sec Start 29: GmxPreprocessTests 29/40 Test #29: GmxPreprocessTests ............... Passed 0.36 sec Start 30: Pdb2gmxTest 30/40 Test #30: Pdb2gmxTest ...................... Passed 15.75 sec Start 31: CorrelationsTest 31/40 Test #31: CorrelationsTest ................. Passed 0.11 sec Start 32: AnalysisDataUnitTests 32/40 Test #32: AnalysisDataUnitTests ............ Passed 0.06 sec Start 33: SelectionUnitTests 33/40 Test #33: SelectionUnitTests ............... Passed 0.23 sec Start 34: TrajectoryAnalysisUnitTests 34/40 Test #34: TrajectoryAnalysisUnitTests ...... Passed 0.61 sec Start 35: EnergyAnalysisUnitTests 35/40 Test #35: EnergyAnalysisUnitTests .......... Passed 0.06 sec Start 36: ToolUnitTests 36/40 Test #36: ToolUnitTests .................... Passed 0.32 sec Start 37: MdrunTests 37/40 Test #37: MdrunTests ....................... Passed 1.68 sec Start 38: MdrunNonIntegratorTests 38/40 Test #38: MdrunNonIntegratorTests .......... Passed 2.76 sec Start 39: LegacyGroupSchemeMdrunTests 39/40 Test #39: LegacyGroupSchemeMdrunTests ...... Passed 0.27 sec Start 40: MdrunMpiTests 40/40 Test #40: MdrunMpiTests .................... Passed 0.89 sec 100% tests passed, 0 tests failed out of 40 Label Time Summary: GTest = 26.66 sec*proc (40 tests) IntegrationTest = 5.68 sec*proc (5 tests) MpiTest = 1.80 sec*proc (3 tests) SlowTest = 15.75 sec*proc (1 test) UnitTest = 5.23 sec*proc (34 tests) Total Test time (real) = 26.92 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/tests /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/tests /builddir/build/BUILD/gromacs-2019/serial_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019/serial_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' cd /builddir/build/BUILD/gromacs-2019/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/serial_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/serial_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2019/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/etc/modulefiles/mpi/mpich-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + test -n mpich + xLD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/lib + LD_LIBRARY_PATH=/usr/lib64/mpich/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/mpich/lib + make -C mpich_d VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 0%] Built target lmfit_objlib make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 1%] Built target libgromacs_external make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/googletest /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest /builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". [ 19%] Built target libgromacs_generated make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 19%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/src/gmock-all.cc Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Built target onlinehelp-test-shared make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 20%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 21%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/src/gtest-all.cc make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 21%] Built target mdrunutility-test-shared make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 81%] Built target libgromacs [ 81%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 81%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/cmdlinetest.cpp cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include 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/usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/testmatchers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/testmatchers.cpp [ 83%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem 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Building CXX object src/testutils/CMakeFiles/testutils.dir/xvgtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/external/tinyxml2/tinyxml2.cpp [ 83%] Linking CXX static library ../../lib/libtestutils.a cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Built target testutils make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" 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CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/mpitest.cpp [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/make_unique.cpp [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include 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CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/pointers.cpp [ 83%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 83%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && 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[ 83%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so [ 84%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/interactivetest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Built target compat-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 84%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 84%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/mdebin.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/settle.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/shake.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/simulationsignal.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroups.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroupscog.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Built target mdlib-test make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests/electricfield.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Built target applied-forces-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/refdata_tests.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests/bonded.cpp [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Built target listed-forces-test make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineparser.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/pargs.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 86%] Built target commandline-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend [ 86%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/testasserts_tests.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/mpich_d 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/hashedmap.cpp [ 86%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/xvgtest_tests.cpp [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 86%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 86%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpich_d.a ../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so [ 86%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 86%] Built target testutils-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend [ 86%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmebsplinetest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Built target domdec-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 87%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests/fft.cpp [ 88%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/gputest.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Built target gpu_utils-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/cpuinfo.cpp [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/hardwaretopology.cpp [ 89%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Built target hardware-test make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend [ 89%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmegathertest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/dofit.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/functions.cpp [ 90%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesolvetest.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/invertmatrix.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/paddedvector.cpp [ 90%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 90%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmetestcommon.cpp [ 90%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 90%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Built target ewald-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 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CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Built target mdrunutility-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Built target mdrunutility-mpi-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpformat.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoption.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoptionmanager.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/option.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/optionsassigner.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/repeatingsection.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/timeunitmanager.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/treesupport.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Built target options-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/exponentialdistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/gammadistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/normaldistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/seed.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/threefry.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformintdistribution.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformrealdistribution.cpp [ 92%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 92%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Built target restraintpotential-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/mpich_d 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests/splinetable.cpp [ 93%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 93%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests/usergpuids.cpp [ 94%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/mpich_d 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Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 94%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 94%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/mpich_d 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Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/arrayref.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask32.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask64.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask128.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/gmxregex.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/logger.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/path.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/stringutil.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textreader.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textwriter.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/typetraits.cpp [ 96%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Built target utility-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/confio.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/filemd5.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/readinp.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/tngio.cpp [ 97%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Built target fileio-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests/pull.cpp [ 97%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/bias.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/biasstate.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/grid.cpp [ 97%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 97%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Built target awh-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/bootstrap_loadstore.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/base.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_vector_operations.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_math.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_memory.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_integer.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_vector_operations.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_math.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_util.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_math.cpp [100%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target simd-test [100%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o [100%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/mpich_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/mpich-ppc64le -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/vectypes.cpp [100%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019/mpich_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpich_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/mpich/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target math-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019/mpich_d Start 1: TestUtilsUnitTests 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.11 sec Start 2: TestUtilsMpiUnitTests 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.12 sec Start 3: MdlibUnitTest 3/27 Test #3: MdlibUnitTest .................... Passed 0.03 sec Start 4: AppliedForcesUnitTest 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec Start 5: ListedForcesTest 5/27 Test #5: ListedForcesTest ................. Passed 0.01 sec Start 6: CommandLineUnitTests 6/27 Test #6: CommandLineUnitTests ............. Passed 0.02 sec Start 7: DomDecTests 7/27 Test #7: DomDecTests ...................... Passed 0.01 sec Start 8: EwaldUnitTests 8/27 Test #8: EwaldUnitTests ................... Passed 0.22 sec Start 9: FFTUnitTests 9/27 Test #9: FFTUnitTests ..................... Passed 0.03 sec Start 10: GpuUtilsUnitTests 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.02 sec Start 11: HardwareUnitTests 11/27 Test #11: HardwareUnitTests ................ Passed 0.03 sec Start 12: MathUnitTests 12/27 Test #12: MathUnitTests .................... Passed 0.02 sec Start 13: MdrunUtilityUnitTests 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.01 sec Start 14: MdrunUtilityMpiUnitTests 14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.15 sec Start 15: OnlineHelpUnitTests 15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.01 sec Start 16: OptionsUnitTests 16/27 Test #16: OptionsUnitTests ................. Passed 0.01 sec Start 17: RandomUnitTests 17/27 Test #17: RandomUnitTests .................. Passed 0.02 sec Start 18: RestraintTests 18/27 Test #18: RestraintTests ................... Passed 0.01 sec Start 19: TableUnitTests 19/27 Test #19: TableUnitTests ................... Passed 0.34 sec Start 20: TaskAssignmentUnitTests 20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.01 sec Start 21: UtilityUnitTests 21/27 Test #21: UtilityUnitTests ................. Passed 0.05 sec Start 22: UtilityMpiUnitTests 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.38 sec Start 23: FileIOTests 23/27 Test #23: FileIOTests ...................... Passed 0.02 sec Start 24: PullTest 24/27 Test #24: PullTest ......................... Passed 0.01 sec Start 25: AwhTest 25/27 Test #25: AwhTest .......................... Passed 0.02 sec Start 26: SimdUnitTests 26/27 Test #26: SimdUnitTests .................... Passed 0.02 sec Start 27: CompatibilityHelpersTests 27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.01 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: GTest = 2.69 sec*proc (27 tests) MpiTest = 1.65 sec*proc (3 tests) UnitTest = 2.69 sec*proc (27 tests) Total Test time (real) = 2.92 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/tests /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/tests /builddir/build/BUILD/gromacs-2019/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019/mpich_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' cd /builddir/build/BUILD/gromacs-2019/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/mpich_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2019/mpich_d' + test -n mpich + module unload mpi/mpich-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-ppc64le + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-ppc64le;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-ppc64le:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-ppc64le;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-ppc64le;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-ppc64le;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-ppc64le;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-ppc64le ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-ppc64le:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/man/openmpi-ppc64le:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-ppc64le ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-ppc64le ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-ppc64le ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.7/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-ppc64le ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-ppc64le ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + test -n openmpi + xLD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/lib + LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le/usr/lib64/openmpi/lib + make -C openmpi_d VERBOSE=1 -j2 check make: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/cmake -H/builddir/build/BUILD/gromacs-2019 -B/builddir/build/BUILD/gromacs-2019/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles 97 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/lmfit_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/CMakeFiles/lmfit_objlib.dir/build.make src/gromacs/CMakeFiles/lmfit_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/lmfit_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 0%] Built target lmfit_objlib make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 1%] Built target libgromacs_external make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Built target libgromacs_generated make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/external/googletest /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest /builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Scanning dependencies of target gmock make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 19%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/src/gmock-all.cc [ 20%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 20%] Built target onlinehelp-test-shared make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/loggertest.cpp [ 81%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpi-printer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Built target testutils make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' Scanning dependencies of target compat-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" 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CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/mpitest.cpp [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/make_unique.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/make_unique.cpp [ 83%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/pointers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/compat/tests/pointers.cpp [ 83%] Linking CXX executable ../../../bin/testutils-mpi-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_openmpi_d.a ../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 83%] Building CXX object src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 83%] Linking CXX executable ../../../../bin/compat-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/pointers.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 83%] Built target testutils-mpi-test make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/testutils/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender 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Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/interactivetest.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Built target compat-test make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Scanning dependencies of target mdlib-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 84%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/calc_verletbuf.cpp [ 84%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/mdebin.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/settle.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/shake.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/simulationsignal.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroups.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdlib/tests/updategroupscog.cpp [ 85%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Built target mdlib-test make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/applied-forces/tests/electricfield.cpp [ 85%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Built target applied-forces-test make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/listed-forces/tests/bonded.cpp [ 85%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Built target listed-forces-test [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o [ 85%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/tests/refdata_tests.cpp cd 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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-pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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target testutils-test make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/hashedmap.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 85%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 85%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 85%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 85%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 85%] Built target domdec-test make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend.internal". Scanning dependencies of target ewald-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem 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CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmegathertest.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineparser.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesolvetest.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/commandline/tests/pargs.cpp [ 86%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [ 86%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 87%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Built target commandline-test make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend.internal". Scanning dependencies of target fft-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 87%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fft/tests/fft.cpp [ 88%] Building CXX object src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/pmetestcommon.cpp [ 88%] Linking CXX executable ../../../../bin/fft-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Built target fft-test make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend.internal". Scanning dependencies of target gpu_utils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gputest.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/gputest.cpp [ 88%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/hostallocator.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/ewald/tests/testhardwarecontexts.cpp [ 88%] Building CXX object src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 88%] Linking CXX executable ../../../../bin/ewald-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Built target ewald-test make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend.internal". Scanning dependencies of target hardware-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/cpuinfo.cpp [ 88%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/hardware/tests/hardwaretopology.cpp [ 89%] Building CXX object src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/hardware-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/hardware-test.dir/cpuinfo.cpp.o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Built target hardware-test [ 89%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/gpu_utils/tests/devicetransfers.cpp [ 89%] Building CXX object src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/CMakeFiles/math-test.dir/depend.internal". Scanning dependencies of target math-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/arrayrefwithpadding.cpp [ 89%] Linking CXX executable ../../../../bin/gpu_utils-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Built target gpu_utils-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend.internal". Scanning dependencies of target mdrunutility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity.cpp [ 89%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 89%] Linking CXX executable ../../../../bin/mdrunutility-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 89%] Built target mdrunutility-test make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/dofit.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/dofit.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend.internal". Scanning dependencies of target mdrunutility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/functions.cpp [ 90%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/mdrunutility-mpi-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Built target mdrunutility-mpi-test make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend.internal". Scanning dependencies of target onlinehelp-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpformat.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/invertmatrix.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpmanager.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/paddedvector.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/paddedvector.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/onlinehelp/tests/helpwritercontext.cpp [ 90%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Linking CXX executable ../../../../bin/onlinehelp-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Built target onlinehelp-test make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/CMakeFiles/options-test.dir/depend.internal". Scanning dependencies of target options-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/abstractoptionstorage.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/vectypes.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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/builddir/build/BUILD/gromacs-2019/src/gromacs/math/tests/vectypes.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoption.cpp [ 90%] Building CXX object src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/filenameoptionmanager.cpp [ 90%] Linking CXX executable ../../../../bin/math-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o CMakeFiles/math-test.dir/dofit.cpp.o CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/paddedvector.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Built target math-test make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/CMakeFiles/random-test.dir/depend.internal". Scanning dependencies of target random-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/exponentialdistribution.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/gammadistribution.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/option.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/option.cpp [ 90%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/optionsassigner.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/normaldistribution.cpp [ 90%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/seed.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/tabulatednormaldistribution.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/repeatingsection.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/threefry.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/threefry.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/timeunitmanager.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformintdistribution.cpp [ 91%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/options/tests/treesupport.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/random/tests/uniformrealdistribution.cpp [ 91%] Building CXX object src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 91%] Linking CXX executable ../../../../bin/random-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so [ 92%] Building CXX object src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Built target random-test make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/depend.internal". [ 92%] Linking CXX executable ../../../../bin/options-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so Scanning dependencies of target restraintpotential-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build.make src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/restraint/tests/manager.cpp make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Built target options-test make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend.internal". Scanning dependencies of target table-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/tables/tests/splinetable.cpp [ 92%] Building CXX object src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 92%] Linking CXX executable ../../../../bin/table-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 92%] Built target table-test make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend.internal". Scanning dependencies of target taskassignment-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/taskassignment/tests/usergpuids.cpp [ 93%] Building CXX object src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/taskassignment-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Built target taskassignment-test make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/depend.internal". Scanning dependencies of target utility-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/physicalnodecommunicator-mpi.cpp [ 93%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 93%] Linking CXX executable ../../../../bin/utility-mpi-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator-mpi.cpp.o CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 93%] Built target utility-mpi-test make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests /builddir/build/BUILD/gromacs-2019/openmpi_d 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend.internal". Scanning dependencies of target utility-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/alignedallocator.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/arrayref.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask32.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask64.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/bitmask128.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreeserializer.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/keyvaluetreetransform.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/gmxregex.cpp [ 94%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/logger.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mutex.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/mutex.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/path.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/path.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/physicalnodecommunicator.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/stringutil.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textreader.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/textwriter.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/utility/tests/typetraits.cpp [ 95%] Building CXX object src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/utility-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/gmxregex.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Built target utility-test make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Dependee 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Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend.internal". Scanning dependencies of target fileio-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/confio.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/filemd5.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/filemd5.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/readinp.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/fileio/tests/tngio.cpp [ 96%] Building CXX object src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/fileio-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/filemd5.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Built target fileio-test make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend.internal". Scanning dependencies of target pull-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/pulling/tests/pull.cpp [ 96%] Building CXX object src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/pull-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Built target pull-test make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend.internal". Scanning dependencies of target awh-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/bias.cpp [ 96%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/biasstate.cpp [ 96%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/grid.cpp.o cd 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/awh/tests/grid.cpp [ 96%] Building CXX object src/gromacs/awh/tests/CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 96%] Linking CXX executable ../../../../bin/awh-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Built target awh-test make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend.internal". 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Scanning dependencies of target simd-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem 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-DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/base.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/base.cpp [ 96%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_floatingpoint_util.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_vector_operations.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_math.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_memory.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd_integer.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_floatingpoint.cpp [ 97%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_vector_operations.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/simd4_math.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_util.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/gromacs/simd/tests/scalar_math.cpp [ 98%] Building CXX object src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H 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CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [ 98%] Linking CXX executable ../../../../bin/simd-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [ 98%] Built target simd-test [ 98%] Building CXX object src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/restraint/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019/src -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019/src/external/thread_mpi/include -isystem /usr/include/openmpi-ppc64le -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019/src/testutils/unittest_main.cpp [100%] Linking CXX executable ../../../../bin/restraintpotential-test cd /builddir/build/BUILD/gromacs-2019/openmpi_d/src/gromacs/restraint/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/restraintpotential-test.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/restraintpotential-test.dir/manager.cpp.o CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/restraintpotential-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_openmpi_d.a ../../../../lib/libgmock.a -lpthread /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3.so -lopenblas -lm -lpthread /usr/lib64/openmpi/lib/libmpi.so make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target restraintpotential-test make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/tests.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/tests.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/tests.dir/depend.internal". Scanning dependencies of target tests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[3]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target tests make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/run-ctest-nophys.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/run-ctest-nophys.dir/depend.internal". Scanning dependencies of target run-ctest-nophys make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f CMakeFiles/run-ctest-nophys.dir/build.make CMakeFiles/run-ctest-nophys.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Running all tests except physical validation /usr/bin/ctest --output-on-failure -E physicalvalidationtests Test project /builddir/build/BUILD/gromacs-2019/openmpi_d Start 1: TestUtilsUnitTests 1/27 Test #1: TestUtilsUnitTests ............... Passed 0.61 sec Start 2: TestUtilsMpiUnitTests 2/27 Test #2: TestUtilsMpiUnitTests ............ Passed 0.14 sec Start 3: MdlibUnitTest 3/27 Test #3: MdlibUnitTest .................... Passed 0.11 sec Start 4: AppliedForcesUnitTest 4/27 Test #4: AppliedForcesUnitTest ............ Passed 0.06 sec Start 5: ListedForcesTest 5/27 Test #5: ListedForcesTest ................. Passed 0.06 sec Start 6: CommandLineUnitTests 6/27 Test #6: CommandLineUnitTests ............. Passed 0.06 sec Start 7: DomDecTests 7/27 Test #7: DomDecTests ...................... Passed 0.06 sec Start 8: EwaldUnitTests 8/27 Test #8: EwaldUnitTests ................... Passed 0.29 sec Start 9: FFTUnitTests 9/27 Test #9: FFTUnitTests ..................... Passed 0.08 sec Start 10: GpuUtilsUnitTests 10/27 Test #10: GpuUtilsUnitTests ................ Passed 0.06 sec Start 11: HardwareUnitTests 11/27 Test #11: HardwareUnitTests ................ Passed 0.07 sec Start 12: MathUnitTests 12/27 Test #12: MathUnitTests .................... Passed 0.06 sec Start 13: MdrunUtilityUnitTests 13/27 Test #13: MdrunUtilityUnitTests ............ Passed 0.06 sec Start 14: MdrunUtilityMpiUnitTests 14/27 Test #14: MdrunUtilityMpiUnitTests ......... Passed 1.65 sec Start 15: OnlineHelpUnitTests 15/27 Test #15: OnlineHelpUnitTests .............. Passed 0.06 sec Start 16: OptionsUnitTests 16/27 Test #16: OptionsUnitTests ................. Passed 0.06 sec Start 17: RandomUnitTests 17/27 Test #17: RandomUnitTests .................. Passed 0.07 sec Start 18: RestraintTests 18/27 Test #18: RestraintTests ................... Passed 0.06 sec Start 19: TableUnitTests 19/27 Test #19: TableUnitTests ................... Passed 0.40 sec Start 20: TaskAssignmentUnitTests 20/27 Test #20: TaskAssignmentUnitTests .......... Passed 0.06 sec Start 21: UtilityUnitTests 21/27 Test #21: UtilityUnitTests ................. Passed 0.08 sec Start 22: UtilityMpiUnitTests 22/27 Test #22: UtilityMpiUnitTests .............. Passed 0.35 sec Start 23: FileIOTests 23/27 Test #23: FileIOTests ...................... Passed 0.07 sec Start 24: PullTest 24/27 Test #24: PullTest ......................... Passed 0.06 sec Start 25: AwhTest 25/27 Test #25: AwhTest .......................... Passed 0.07 sec Start 26: SimdUnitTests 26/27 Test #26: SimdUnitTests .................... Passed 0.06 sec Start 27: CompatibilityHelpersTests 27/27 Test #27: CompatibilityHelpersTests ........ Passed 0.06 sec 100% tests passed, 0 tests failed out of 27 Label Time Summary: GTest = 4.83 sec*proc (27 tests) MpiTest = 2.15 sec*proc (3 tests) UnitTest = 4.83 sec*proc (27 tests) Total Test time (real) = 5.01 sec make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target run-ctest-nophys make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/tests /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/tests /builddir/build/BUILD/gromacs-2019/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/tests/CMakeFiles/missing-tests-notice.dir/depend.internal". Scanning dependencies of target missing-tests-notice make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f tests/CMakeFiles/missing-tests-notice.dir/build.make tests/CMakeFiles/missing-tests-notice.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Some tests not available cd /builddir/build/BUILD/gromacs-2019/openmpi_d/tests && /usr/bin/cmake -E echo "NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON." NOTE: Regression tests have not been run. If you want to run them from the build system, get the correct version of the regression tests package and set REGRESSIONTEST_PATH in CMake to point to it, or set REGRESSIONTEST_DOWNLOAD=ON. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target missing-tests-notice make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' cd /builddir/build/BUILD/gromacs-2019/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019 /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/check.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/check.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/check.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles/check.dir/depend.internal". Scanning dependencies of target check make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make[3]: Nothing to be done for 'CMakeFiles/check.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' [100%] Built target check make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019/openmpi_d/CMakeFiles 0 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' make: Leaving directory '/builddir/build/BUILD/gromacs-2019/openmpi_d' + test -n openmpi + module unload mpi/openmpi-ppc64le ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-ppc64le + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + exit 0 Processing files: gromacs-2019-1.fc29.ppc64le Provides: gromacs = 2019-1.fc29 gromacs(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl libX11.so.6()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgromacs.so.4()(64bit) libgromacs_d.so.4()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libpthread.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH) Obsoletes: gromacs-csh < 2016.1-2 gromacs-ngmx < 5.0.4-1 gromacs-zsh < 2016.1-2 Processing files: gromacs-common-2019-1.fc29.noarch Provides: gromacs-bash = 2019-1.fc29 gromacs-common = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-bash < 5.0.4-1 Processing files: gromacs-doc-2019-1.fc29.noarch Provides: gromacs-doc = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Obsoletes: gromacs-common < 5.0.5-2 Processing files: gromacs-devel-2019-1.fc29.ppc64le Provides: cmake(gromacs) = 2019 cmake(gromacs_d) = 2019 gromacs-devel = 2019-1.fc29 gromacs-devel(ppc-64) = 2019-1.fc29 pkgconfig(libgromacs) = 2019 pkgconfig(libgromacs_d) = 2019 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem libgromacs.so.4()(64bit) libgromacs_d.so.4()(64bit) pkgconfig(fftw3) pkgconfig(fftw3f) Obsoletes: gromacs-mpich-devel < 2016-0.1.20160318gitbec9c87 gromacs-openmpi-devel < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-libs-2019-1.fc29.ppc64le Provides: gromacs-libs = 2019-1.fc29 gromacs-libs(ppc-64) = 2019-1.fc29 libgromacs.so.4()(64bit) libgromacs_d.so.4()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4.4)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libhwloc.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) librt.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Processing files: gromacs-openmpi-2019-1.fc29.ppc64le Provides: gromacs-openmpi = 2019-1.fc29 gromacs-openmpi(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libhwloc.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libmpi.so.20()(64bit)(openmpi-ppc64le) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) librt.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Obsoletes: gromacs-openmpi-libs < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-mpich-2019-1.fc29.ppc64le Provides: gromacs-mpich = 2019-1.fc29 gromacs-mpich(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libfftw3.so.3()(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libhwloc.so.5()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libmpi.so.12()(64bit)(mpich-ppc64le) libopenblas.so.0()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) librt.so.1()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libtng_io.so.1()(64bit) rtld(GNU_HASH) Obsoletes: gromacs-mpich-libs < 2016-0.1.20160318gitbec9c87 Processing files: gromacs-debugsource-2019-1.fc29.ppc64le Provides: gromacs-debugsource = 2019-1.fc29 gromacs-debugsource(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: gromacs-debuginfo-2019-1.fc29.ppc64le Provides: debuginfo(build-id) = 8c7d35b094314e44c5c980393c066fd6546349df debuginfo(build-id) = c58b63099c3317d95401c604123d42db482c0905 gromacs-debuginfo = 2019-1.fc29 gromacs-debuginfo(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(ppc-64) = 2019-1.fc29 Processing files: gromacs-libs-debuginfo-2019-1.fc29.ppc64le Provides: debuginfo(build-id) = 5efb31567a6e53932521150ca3d01e9f959bcda8 debuginfo(build-id) = 60e166b1573dcf963bb39b9865f2cdd1c3dd251c gromacs-libs-debuginfo = 2019-1.fc29 gromacs-libs-debuginfo(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(ppc-64) = 2019-1.fc29 Processing files: gromacs-openmpi-debuginfo-2019-1.fc29.ppc64le Provides: debuginfo(build-id) = 18314a6d6ee8b279118db912cdb54777e6269883 debuginfo(build-id) = 4a0dcf6cd4b441af7e247b14c1f85f886e434de9 gromacs-openmpi-debuginfo = 2019-1.fc29 gromacs-openmpi-debuginfo(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(ppc-64) = 2019-1.fc29 Processing files: gromacs-mpich-debuginfo-2019-1.fc29.ppc64le Provides: debuginfo(build-id) = 0cceebb5ace352d50eb4b4c4c3bd1ea05d0ffa27 debuginfo(build-id) = 1b698976d856a92e7b3e577e8a124cddbe17c9b8 gromacs-mpich-debuginfo = 2019-1.fc29 gromacs-mpich-debuginfo(ppc-64) = 2019-1.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(ppc-64) = 2019-1.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le Wrote: /builddir/build/RPMS/gromacs-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-common-2019-1.fc29.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-doc-2019-1.fc29.noarch.rpm Wrote: /builddir/build/RPMS/gromacs-devel-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-libs-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-debugsource-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-debuginfo-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-libs-debuginfo-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-openmpi-debuginfo-2019-1.fc29.ppc64le.rpm Wrote: /builddir/build/RPMS/gromacs-mpich-debuginfo-2019-1.fc29.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.aOBLka + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019 + /usr/bin/rm -rf /builddir/build/BUILDROOT/gromacs-2019-1.fc29.ppc64le + exit 0 Finish: rpmbuild gromacs-2019-1.fc29.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/842182-fedora-29-ppc64le-1546815571.861396/root/var/log/dnf.log /var/lib/mock/842182-fedora-29-ppc64le-1546815571.861396/root/var/log/dnf.librepo.log /var/lib/mock/842182-fedora-29-ppc64le-1546815571.861396/root/var/log/dnf.rpm.log Finish: build phase for gromacs-2019-1.fc29.src.rpm INFO: Done(/var/lib/copr-rpmbuild/results/gromacs-2019-1.fc29.src.rpm) Config(child) 79 minutes 19 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run